BLASTX nr result
ID: Lithospermum23_contig00022858
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lithospermum23_contig00022858
(428 letters)
Database: ./nr
115,041,592 sequences; 42,171,959,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ABA95367.1 retrotransposon protein, putative, Ty1-copia subclass... 76 3e-13
AAU10682.1 putative polyprotein [Oryza sativa Japonica Group] 75 5e-13
AAT85031.1 putative polyprotein [Oryza sativa Japonica Group] AB... 75 5e-13
JAT44458.1 Retrovirus-related Pol polyprotein from transposon TN... 72 8e-13
ABA98049.1 retrotransposon protein, putative, Ty1-copia subclass... 72 4e-12
JAT59554.1 Retrovirus-related Pol polyprotein from transposon TN... 72 6e-12
CAH67225.1 OSIGBa0145M07.7 [Oryza sativa Indica Group] 72 6e-12
CAE05450.3 OSJNBa0073E02.10 [Oryza sativa Japonica Group] 72 6e-12
AAN04167.1 Putative copia-like retrotransposon polyprotein [Oryz... 71 1e-11
KYP38376.1 Retrovirus-related Pol polyprotein from transposon TN... 69 2e-11
JAU21749.1 putative mitochondrial protein, partial [Noccaea caer... 66 2e-11
KYP46802.1 Retrovirus-related Pol polyprotein from transposon TN... 70 3e-11
AAB82754.1 retrofit [Oryza longistaminata] 70 3e-11
BAB90546.1 putative rice retrotransposon retrofit gag/pol polypr... 70 3e-11
ACV42639.1 gag/pol [Oryza sativa Japonica Group] 70 3e-11
XP_018855716.1 PREDICTED: uncharacterized protein LOC109017986, ... 65 8e-11
XP_016733174.1 PREDICTED: uncharacterized protein LOC107943867 [... 69 9e-11
OMO75820.1 Integrase, catalytic core [Corchorus capsularis] 68 1e-10
KYP31489.1 Retrovirus-related Pol polyprotein from transposon TN... 67 1e-10
KYP31487.1 Retrovirus-related Pol polyprotein from transposon TN... 67 2e-10
>ABA95367.1 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 807
Score = 75.9 bits (185), Expect = 3e-13
Identities = 36/74 (48%), Positives = 45/74 (60%)
Frame = -2
Query: 250 CYVHSSIEVWHKTLGHPVMSLVQRVVISSKLPFNRSSSIAVCTCCQMVKSHKLPFVQFTF 71
C V S WH L HP +V RVV +KLP +S S +VC CQ KSH+LP+ + T
Sbjct: 413 CSVAPSFARWHSRLSHPTTPIVSRVVNQNKLPCQKSHSESVCDACQKAKSHQLPYSRSTS 472
Query: 70 ESKAPLELVFSNVW 29
S PLELV+S+VW
Sbjct: 473 VSTRPLELVYSDVW 486
>AAU10682.1 putative polyprotein [Oryza sativa Japonica Group]
Length = 1210
Score = 75.1 bits (183), Expect = 5e-13
Identities = 34/73 (46%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Frame = -2
Query: 244 VHSSIEVWHKTLGHPVMSLVQRVVISSKLP-FNRSSSIAVCTCCQMVKSHKLPFVQFTFE 68
+ ++ +WH LGHP +VQ+VV + LP S + VC CQ KSH+LPF++ T
Sbjct: 442 IKPTVSIWHSRLGHPSWQIVQKVVSHNNLPCLGESKELGVCDACQKGKSHQLPFLKSTSA 501
Query: 67 SKAPLELVFSNVW 29
S PLELVFS+VW
Sbjct: 502 SNFPLELVFSDVW 514
>AAT85031.1 putative polyprotein [Oryza sativa Japonica Group] ABF96679.1
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1437
Score = 75.1 bits (183), Expect = 5e-13
Identities = 36/70 (51%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
Frame = -2
Query: 235 SIEVWHKTLGHPVMSLVQRVVISSKLP-FNRSSSIAVCTCCQMVKSHKLPFVQFTFESKA 59
S E WH LGHP ++V++V+ S LP + S ++VC CQ KSH+L F + T ESK
Sbjct: 452 SFERWHSRLGHPSYTVVEKVIKSQNLPCLDVSEQVSVCDACQKAKSHQLSFPKSTSESKY 511
Query: 58 PLELVFSNVW 29
PLELVFS+VW
Sbjct: 512 PLELVFSDVW 521
>JAT44458.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Anthurium amnicola]
Length = 184
Score = 71.6 bits (174), Expect = 8e-13
Identities = 33/73 (45%), Positives = 45/73 (61%)
Frame = -2
Query: 223 WHKTLGHPVMSLVQRVVISSKLPFNRSSSIAVCTCCQMVKSHKLPFVQFTFESKAPLELV 44
WH +GHP VQ ++ LP + SSS +VC+ C KSHKLPF + APL+LV
Sbjct: 20 WHARMGHPAFRTVQSIISKYGLPSSPSSSSSVCSACMKAKSHKLPFTLSPSVASAPLDLV 79
Query: 43 FSNVWEKSIVLSN 5
+S+VW + VLS+
Sbjct: 80 YSDVWGPAPVLSH 92
>ABA98049.1 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1460
Score = 72.4 bits (176), Expect = 4e-12
Identities = 35/69 (50%), Positives = 46/69 (66%)
Frame = -2
Query: 235 SIEVWHKTLGHPVMSLVQRVVISSKLPFNRSSSIAVCTCCQMVKSHKLPFVQFTFESKAP 56
S++ WH LGHP ++ V++VV LP + SS +VC CQ KSH+LPF + SK P
Sbjct: 449 SLDRWHHRLGHPSITTVKQVVNKFSLPCSDLSSESVCNACQQAKSHQLPFPISSSVSKHP 508
Query: 55 LELVFSNVW 29
LELVFS+VW
Sbjct: 509 LELVFSDVW 517
>JAT59554.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Anthurium amnicola]
Length = 977
Score = 72.0 bits (175), Expect = 6e-12
Identities = 32/74 (43%), Positives = 46/74 (62%)
Frame = -2
Query: 223 WHKTLGHPVMSLVQRVVISSKLPFNRSSSIAVCTCCQMVKSHKLPFVQFTFESKAPLELV 44
WH LGHP + VQ ++ LP + SS +VC+ C KSHKLPF + APL+L+
Sbjct: 27 WHARLGHPALRTVQSIISKYGLPVSPSSPSSVCSACMQAKSHKLPFASSPPVASAPLDLI 86
Query: 43 FSNVWEKSIVLSNK 2
+S+VW + VLS++
Sbjct: 87 YSDVWGPAPVLSHE 100
>CAH67225.1 OSIGBa0145M07.7 [Oryza sativa Indica Group]
Length = 1087
Score = 72.0 bits (175), Expect = 6e-12
Identities = 32/65 (49%), Positives = 40/65 (61%)
Frame = -2
Query: 223 WHKTLGHPVMSLVQRVVISSKLPFNRSSSIAVCTCCQMVKSHKLPFVQFTFESKAPLELV 44
WH LGHP S+V RV+ +P + S VC CQ KSH+LP+ + S APLELV
Sbjct: 446 WHSRLGHPSFSVVSRVLRKHNIPVSESREERVCDACQQAKSHQLPYSRSVSRSSAPLELV 505
Query: 43 FSNVW 29
FS+VW
Sbjct: 506 FSDVW 510
>CAE05450.3 OSJNBa0073E02.10 [Oryza sativa Japonica Group]
Length = 1131
Score = 72.0 bits (175), Expect = 6e-12
Identities = 32/65 (49%), Positives = 40/65 (61%)
Frame = -2
Query: 223 WHKTLGHPVMSLVQRVVISSKLPFNRSSSIAVCTCCQMVKSHKLPFVQFTFESKAPLELV 44
WH LGHP S+V RV+ +P + S VC CQ KSH+LP+ + S APLELV
Sbjct: 446 WHSRLGHPSFSVVSRVLRKHNIPVSESREERVCDACQQAKSHQLPYSRSVSRSSAPLELV 505
Query: 43 FSNVW 29
FS+VW
Sbjct: 506 FSDVW 510
>AAN04167.1 Putative copia-like retrotransposon polyprotein [Oryza sativa
Japonica Group] AAP53032.1 retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1042
Score = 70.9 bits (172), Expect = 1e-11
Identities = 34/73 (46%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Frame = -2
Query: 244 VHSSIEVWHKTLGHPVMSLVQRVVISSKLPFNRSSSI-AVCTCCQMVKSHKLPFVQFTFE 68
V S+E WH LGHP + +V +V+ S+KLP R S+ +VC CQ KSH+LP+
Sbjct: 344 VAPSLERWHSRLGHPSIPIVMKVISSNKLPCLRESNKESVCDACQKAKSHQLPYSNSMSV 403
Query: 67 SKAPLELVFSNVW 29
S PLEL++S+VW
Sbjct: 404 SNKPLELIYSDVW 416
>KYP38376.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Cajanus cajan]
Length = 201
Score = 68.6 bits (166), Expect = 2e-11
Identities = 30/74 (40%), Positives = 44/74 (59%)
Frame = -2
Query: 241 HSSIEVWHKTLGHPVMSLVQRVVISSKLPFNRSSSIAVCTCCQMVKSHKLPFVQFTFESK 62
HSS ++WH LGHP +V V+ S +P ++S C C M KSH+LPF+
Sbjct: 33 HSSFQLWHSRLGHPSPRIVNTVLKSCNMPIAKNSDSFFCQSCCMGKSHQLPFIDSKTVYT 92
Query: 61 APLELVFSNVWEKS 20
+PLEL++S++W S
Sbjct: 93 SPLELIYSDIWGPS 106
>JAU21749.1 putative mitochondrial protein, partial [Noccaea caerulescens]
Length = 100
Score = 65.9 bits (159), Expect = 2e-11
Identities = 29/82 (35%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Frame = -2
Query: 256 FHCYVHSSIEVWHKTLGHPVMSLVQRVVISSKLPFNRSSSIA-VCTCCQMVKSHKLPFVQ 80
F V +S+ WH LGHP ++++ + + LP + + +A +C+ C + K HKLPF
Sbjct: 5 FASTVKTSLTDWHSRLGHPAIAVLNKTISQFNLPVSSNVLMAQLCSACSINKMHKLPFSS 64
Query: 79 FTFESKAPLELVFSNVWEKSIV 14
T +S PL++VFS+VW ++
Sbjct: 65 STLQSVRPLDIVFSDVWTSPLI 86
>KYP46802.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 787
Score = 70.1 bits (170), Expect = 3e-11
Identities = 33/79 (41%), Positives = 48/79 (60%)
Frame = -2
Query: 241 HSSIEVWHKTLGHPVMSLVQRVVISSKLPFNRSSSIAVCTCCQMVKSHKLPFVQFTFESK 62
HS ++WH LGHP +V+ + +P + +C C M K+H+LPFVQ T E K
Sbjct: 491 HSLFQLWHSRLGHPSPRIVKLALKHCNIPSSHFPDSFLCDSCCMGKAHQLPFVQSTTEYK 550
Query: 61 APLELVFSNVWEKSIVLSN 5
+PLELVF+++W S V S+
Sbjct: 551 SPLELVFTDIWGPSPVPSS 569
>AAB82754.1 retrofit [Oryza longistaminata]
Length = 1445
Score = 70.1 bits (170), Expect = 3e-11
Identities = 32/70 (45%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -2
Query: 235 SIEVWHKTLGHPVMSLVQRVVISSKLPFN-RSSSIAVCTCCQMVKSHKLPFVQFTFESKA 59
S+ WH LGHP + +V++V+ + LP + S + +VC CQ KSH+LP+++ T S+
Sbjct: 453 SLSRWHSRLGHPSLPIVKQVISRNNLPCSVESVNQSVCNACQEAKSHQLPYIRSTSVSQF 512
Query: 58 PLELVFSNVW 29
PLELVFS+VW
Sbjct: 513 PLELVFSDVW 522
>BAB90546.1 putative rice retrotransposon retrofit gag/pol polyprotein [Oryza
sativa Japonica Group]
Length = 1448
Score = 70.1 bits (170), Expect = 3e-11
Identities = 32/70 (45%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -2
Query: 235 SIEVWHKTLGHPVMSLVQRVVISSKLPFN-RSSSIAVCTCCQMVKSHKLPFVQFTFESKA 59
S+ WH LGHP + +V++V+ + LP + S + +VC CQ KSH+LP+++ T S+
Sbjct: 457 SLSRWHSRLGHPSLPIVKQVISRNNLPCSVESVNQSVCNACQEAKSHQLPYIRSTSVSQF 516
Query: 58 PLELVFSNVW 29
PLELVFS+VW
Sbjct: 517 PLELVFSDVW 526
>ACV42639.1 gag/pol [Oryza sativa Japonica Group]
Length = 1448
Score = 70.1 bits (170), Expect = 3e-11
Identities = 32/70 (45%), Positives = 48/70 (68%), Gaps = 1/70 (1%)
Frame = -2
Query: 235 SIEVWHKTLGHPVMSLVQRVVISSKLPFN-RSSSIAVCTCCQMVKSHKLPFVQFTFESKA 59
S+ WH LGHP + +V++V+ + LP + S + +VC CQ KSH+LP+++ T S+
Sbjct: 457 SLSRWHSRLGHPSLPIVKQVISRNNLPCSVESVNQSVCNACQEAKSHQLPYIRSTSVSQF 516
Query: 58 PLELVFSNVW 29
PLELVFS+VW
Sbjct: 517 PLELVFSDVW 526
>XP_018855716.1 PREDICTED: uncharacterized protein LOC109017986, partial [Juglans
regia]
Length = 128
Score = 65.1 bits (157), Expect = 8e-11
Identities = 31/79 (39%), Positives = 43/79 (54%)
Frame = -2
Query: 244 VHSSIEVWHKTLGHPVMSLVQRVVISSKLPFNRSSSIAVCTCCQMVKSHKLPFVQFTFES 65
+ SI WH+ LGH V V+ S+K+ + +VC C+M KSH LPF +
Sbjct: 37 IRVSITDWHRRLGHASFRAVNHVLNSNKISVEVNKRHSVCPDCEMAKSHNLPFANSVNHA 96
Query: 64 KAPLELVFSNVWEKSIVLS 8
PLEL+FS++W S V S
Sbjct: 97 TRPLELIFSDIWGPSAVTS 115
>XP_016733174.1 PREDICTED: uncharacterized protein LOC107943867 [Gossypium
hirsutum]
Length = 790
Score = 68.6 bits (166), Expect = 9e-11
Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 3/85 (3%)
Frame = -2
Query: 250 CYVHSS---IEVWHKTLGHPVMSLVQRVVISSKLPFNRSSSIAVCTCCQMVKSHKLPFVQ 80
C+ SS I VWH LGHP +++ + + S +P S+ ++ C C + K HKLPF++
Sbjct: 531 CFTTSSTVPINVWHARLGHPCKTVLAKALASCNVPLGSSNELSHCISCHLGKEHKLPFLK 590
Query: 79 FTFESKAPLELVFSNVWEKSIVLSN 5
+ + APL+LV ++VW + V SN
Sbjct: 591 SSTQYTAPLQLVVADVWGPAPVPSN 615
>OMO75820.1 Integrase, catalytic core [Corchorus capsularis]
Length = 1430
Score = 68.2 bits (165), Expect = 1e-10
Identities = 29/81 (35%), Positives = 49/81 (60%)
Frame = -2
Query: 244 VHSSIEVWHKTLGHPVMSLVQRVVISSKLPFNRSSSIAVCTCCQMVKSHKLPFVQFTFES 65
V SS+E WH+ LGHP ++Q V+ S LP + + C C KSH+LPF + S
Sbjct: 642 VKSSLETWHQRLGHPNSHVLQSVLKSFSLPCSSFKQFSSCNACYCNKSHRLPFSSSSIVS 701
Query: 64 KAPLELVFSNVWEKSIVLSNK 2
+ PL++++++VW + ++S +
Sbjct: 702 RGPLDVIYTDVWGPAQIISTQ 722
>KYP31489.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 311
Score = 67.4 bits (163), Expect = 1e-10
Identities = 32/79 (40%), Positives = 47/79 (59%)
Frame = -2
Query: 241 HSSIEVWHKTLGHPVMSLVQRVVISSKLPFNRSSSIAVCTCCQMVKSHKLPFVQFTFESK 62
HS ++WH LGHP +V+ + +P +C C M K+H+LPFVQ T E K
Sbjct: 117 HSLFQLWHSRLGHPSPRIVKFALKHCNIPSIHFPDSFLCDSCCMGKAHQLPFVQSTTEYK 176
Query: 61 APLELVFSNVWEKSIVLSN 5
+P+ELVF+++W S V S+
Sbjct: 177 SPIELVFTDIWGPSPVPSS 195
>KYP31487.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 348
Score = 67.4 bits (163), Expect = 2e-10
Identities = 32/79 (40%), Positives = 47/79 (59%)
Frame = -2
Query: 241 HSSIEVWHKTLGHPVMSLVQRVVISSKLPFNRSSSIAVCTCCQMVKSHKLPFVQFTFESK 62
HS ++WH LGHP +V+ + +P +C C M K+H+LPFVQ T E K
Sbjct: 117 HSLFQLWHSRLGHPSPRIVKFALKHCNIPSIHFPDSFLCDSCCMGKAHQLPFVQSTTEYK 176
Query: 61 APLELVFSNVWEKSIVLSN 5
+P+ELVF+++W S V S+
Sbjct: 177 SPIELVFTDIWGPSPVPSS 195