BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum23_contig00019958
         (590 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

OMO51138.1 reverse transcriptase [Corchorus capsularis]                74   5e-12
OMO88470.1 reverse transcriptase [Corchorus capsularis]                64   1e-08
OMO86377.1 reverse transcriptase [Corchorus capsularis]                62   8e-08

>OMO51138.1 reverse transcriptase [Corchorus capsularis]
          Length = 1821

 Score = 74.3 bits (181), Expect = 5e-12
 Identities = 62/230 (26%), Positives = 98/230 (42%), Gaps = 40/230 (17%)
 Frame = -1

Query: 590  KHLLPDNLCTSY-FSEETCRHFLCECPRSLLFWQKLGFTPSPPPNNNLIDWFKVHSSKVN 414
            +++ PD +C  Y  SEE+  H L +C  ++L W      P+     N  DW   + S   
Sbjct: 1557 RNINPDLVCDIYPDSEESTLHILRDCSYAVLVWNSFSQLPADFFQYNFKDWILSNLSTDL 1616

Query: 413  TIHNIHVGTLFLFGC*SLWHCRNTRIF--*PLRPLDPIKDCIRFASEFFFHGQNLTTQKQ 240
             +  ++  +LF + C ++W+ RN RIF    + P +        ASEF F G        
Sbjct: 1617 FVSGLNWSSLFAYSCWTIWYARNLRIFQGKSMLPEETFFSIKLKASEFVFLGLCPIKPVT 1676

Query: 239  RTRLLIKWTPP--------LNGSEKKKP-------------R*CRRLDHW---------F 150
            R+ + ++W PP         +GS +  P             R  R + H           
Sbjct: 1677 RSMVNVRWNPPSLGWFKLNSDGSPEGNPGVVGRGGGVIRNDRVERGIHHLEINIDAKVVI 1736

Query: 149  HENNQCNT-------LVNDCKWLLSKIANFGLHHLYREGNQLADALANLG 21
            H     NT       +++DC+ L+S+I N  L   +RE N+ ADALA+ G
Sbjct: 1737 HLIENANTDLHPLANIISDCRLLMSRIPNVKLSQCFREANRAADALASKG 1786


>OMO88470.1 reverse transcriptase [Corchorus capsularis]
          Length = 1768

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 36/120 (30%), Positives = 54/120 (45%), Gaps = 2/120 (1%)
 Frame = -1

Query: 551  SEETCRHFLCECPRSLLFWQKLGFTPSPPPNNNLIDWFKVHSSKVNTIHNIHVGTLFLFG 372
            SEE C H L +C  +   WQ      +   + ++ DW  ++ S   +  N    TLF + 
Sbjct: 1487 SEEDCLHVLRDCTFATEVWQSFSLPDNFFDSLSIKDWIDLNLSSSMSFRNTPWPTLFAYS 1546

Query: 371  C*SLWHCRNTRIF--*PLRPLDPIKDCIRFASEFFFHGQNLTTQKQRTRLLIKWTPPLNG 198
            C ++W  RN+R F      P       +  + EFF    N TT  +R  +L+ W PPL G
Sbjct: 1547 CWAIWKARNSRTFLGKVALPFTVKTQAVNLSIEFFHLAFNNTTAIKRNEILVSWIPPLQG 1606


>OMO86377.1 reverse transcriptase [Corchorus capsularis]
          Length = 3633

 Score = 62.0 bits (149), Expect = 8e-08
 Identities = 45/149 (30%), Positives = 67/149 (44%), Gaps = 4/149 (2%)
 Frame = -1

Query: 551  SEETCRHFLCECPRSLLFWQKLGFTPSPPPN-NNLIDWFKVHSSKVNTIHNIHVGTLFLF 375
            +EE+  H L +C  +   W K+   P    + +N+ DWF+++ S  N ++N+    LF +
Sbjct: 3377 TEESVLHILRDCTIAHSLWDKISHLPQHFFDCDNVFDWFRINLSDPNVVNNLPWPCLFAY 3436

Query: 374  GC*SLWHCRNTRIF*PLRPLD---PIKDCIRFASEFFFHGQNLTTQKQRTRLLIKWTPPL 204
             C SLW+ RN R+F   + LD           ASEFF  G   T    R  + + W PP 
Sbjct: 3437 CCWSLWYSRNARLF-QGKALDFNSVFNTSFVKASEFFHLGAAKTKFVARKIVNVHWIPPS 3495

Query: 203  NGSEKKKPR*CRRLDHWFHENNQCNTLVN 117
             G              WF  N+  +TL N
Sbjct: 3496 YG--------------WFKLNSDGSTLDN 3510