BLASTX nr result
ID: Lithospermum23_contig00019580
seq
BLASTX 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lithospermum23_contig00019580
(336 letters)
Database: ./nr
115,041,592 sequences; 42,171,959,267 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
JAV01053.1 Retrovirus-related Pol polyprotein from transposon TN... 177 1e-55
AAC26250.1 contains similarity to reverse transcriptase (Pfam: r... 185 2e-52
ABA99022.2 retrotransposon protein, putative, Ty1-copia subclass... 181 7e-51
ADB85429.1 putative retrotransposon protein [Phyllostachys edulis] 180 2e-50
AAX94813.1 retrotransposon protein, putative, Ty1-copia sub-clas... 177 1e-49
AAX96621.1 retrotransposon protein, putative, Ty1-copia sub-clas... 174 2e-49
CAD39797.2 OSJNBa0071G03.10 [Oryza sativa Japonica Group] 176 4e-49
AAV85747.1 Integrase core domain, putative [Oryza sativa Japonic... 176 5e-49
AAR06328.1 putative polyprotein [Oryza sativa Japonica Group] 174 2e-48
ABF97393.1 retrotransposon protein, putative, Ty1-copia subclass... 174 2e-48
BAA22288.1 polyprotein [Oryza australiensis] 174 2e-48
AAP44605.1 putative polyprotein [Oryza sativa Japonica Group] 174 3e-48
ABF97047.1 retrotransposon protein, putative, Ty1-copia subclass... 174 3e-48
CAE04999.2 OSJNBb0093G06.7 [Oryza sativa Japonica Group] 169 1e-46
ABA98367.2 retrotransposon protein, putative, Ty1-copia subclass... 168 3e-46
AAS01945.1 putative polyprotein [Oryza sativa Japonica Group] 168 4e-46
ABF97213.1 retrotransposon protein, putative, Ty1-copia subclass... 168 4e-46
CAE03845.1 OSJNBb0089K06.4 [Oryza sativa Japonica Group] 165 3e-45
KYP42262.1 Retrovirus-related Pol polyprotein from transposon TN... 161 2e-44
KIO93942.1 hypothetical protein QP38_2410 [Lactobacillus brevis] 152 2e-43
>JAV01053.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94,
partial [Noccaea caerulescens]
Length = 109
Score = 177 bits (448), Expect = 1e-55
Identities = 80/106 (75%), Positives = 90/106 (84%)
Frame = +2
Query: 17 INLKWNKPNDLNQTCLWHCRLGHINENRIKKLHSGGILEGFDYESYDKCESCLLGKMTKT 196
I K K ND NQT LWHCRLGHINE RI+KLHS G+L FDYES++KCESCLLGKMTK
Sbjct: 1 IRTKRFKSNDSNQTFLWHCRLGHINEKRIQKLHSDGLLSSFDYESFEKCESCLLGKMTKA 60
Query: 197 PFTGYNERASDLLGIIHTDVCGPMNTSARGGYNYFITFTDDYSRYG 334
PFTG++ERASDLLG+IHTDVCGPM+ +ARG Y YFITFT D+SRYG
Sbjct: 61 PFTGHSERASDLLGLIHTDVCGPMSINARGNYQYFITFTHDFSRYG 106
>AAC26250.1 contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
19.29) [Arabidopsis thaliana] CAB80804.1 putative
retrotransposon protein [Arabidopsis thaliana]
Length = 964
Score = 185 bits (470), Expect = 2e-52
Identities = 84/108 (77%), Positives = 92/108 (85%)
Frame = +2
Query: 11 YNINLKWNKPNDLNQTCLWHCRLGHINENRIKKLHSGGILEGFDYESYDKCESCLLGKMT 190
YNI K K NDLN T LWHCRLGHINE I+KLHS G+L FDYESY+ CESCLLGKMT
Sbjct: 66 YNIRTKKFKSNDLNPTFLWHCRLGHINEKHIQKLHSDGLLNSFDYESYETCESCLLGKMT 125
Query: 191 KTPFTGYNERASDLLGIIHTDVCGPMNTSARGGYNYFITFTDDYSRYG 334
K PFTG++ERASDLLG+IHTDVCGPM+TSARG Y YFITFTDD+SRYG
Sbjct: 126 KAPFTGHSERASDLLGLIHTDVCGPMSTSARGNYQYFITFTDDFSRYG 173
>ABA99022.2 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 829
Score = 181 bits (458), Expect = 7e-51
Identities = 78/108 (72%), Positives = 93/108 (86%)
Frame = +2
Query: 11 YNINLKWNKPNDLNQTCLWHCRLGHINENRIKKLHSGGILEGFDYESYDKCESCLLGKMT 190
YNIN K PNDLN T +WHCRLGHINE R+KKLH G+L FD+ES++ CESCLLGKMT
Sbjct: 366 YNINAKRQLPNDLNPTFIWHCRLGHINEKRMKKLHRDGLLHSFDFESFETCESCLLGKMT 425
Query: 191 KTPFTGYNERASDLLGIIHTDVCGPMNTSARGGYNYFITFTDDYSRYG 334
K PFTG +ERAS+LLG++HTDVCGPM+++ARGG+ YFITFTDD+SRYG
Sbjct: 426 KAPFTGQSERASELLGLVHTDVCGPMSSTARGGFGYFITFTDDFSRYG 473
>ADB85429.1 putative retrotransposon protein [Phyllostachys edulis]
Length = 1313
Score = 180 bits (457), Expect = 2e-50
Identities = 79/108 (73%), Positives = 93/108 (86%)
Frame = +2
Query: 11 YNINLKWNKPNDLNQTCLWHCRLGHINENRIKKLHSGGILEGFDYESYDKCESCLLGKMT 190
+NIN K +PN++N T +WHCRLGHI+E R+KKLH GIL FD ES++ CESC+LGKMT
Sbjct: 510 FNINAKRLRPNNMNSTFIWHCRLGHISEKRMKKLHDDGILNSFDLESFETCESCILGKMT 569
Query: 191 KTPFTGYNERASDLLGIIHTDVCGPMNTSARGGYNYFITFTDDYSRYG 334
KTPFTG NERASDLL +IHTDVCGPM+T+ARGG+ YFITFTDDYSRYG
Sbjct: 570 KTPFTGRNERASDLLALIHTDVCGPMSTTARGGFQYFITFTDDYSRYG 617
>AAX94813.1 retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] ABA93176.1 retrotransposon
protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 938
Score = 177 bits (450), Expect = 1e-49
Identities = 75/108 (69%), Positives = 94/108 (87%)
Frame = +2
Query: 11 YNINLKWNKPNDLNQTCLWHCRLGHINENRIKKLHSGGILEGFDYESYDKCESCLLGKMT 190
YNIN K +PNDLN T +WHCRLGHINE R++KLH G+L FD+ES++ CESCLLGKMT
Sbjct: 307 YNINAKRQRPNDLNPTFIWHCRLGHINERRMEKLHRDGLLHSFDFESFETCESCLLGKMT 366
Query: 191 KTPFTGYNERASDLLGIIHTDVCGPMNTSARGGYNYFITFTDDYSRYG 334
K PFTG +E+AS+LLG++HTDVCGPM+++ARGG+ YFITFT+D+SRYG
Sbjct: 367 KAPFTGQSEKASELLGLVHTDVCGPMSSTARGGFGYFITFTNDFSRYG 414
>AAX96621.1 retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] ABA92973.1 retrotransposon
protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 591
Score = 174 bits (441), Expect = 2e-49
Identities = 75/108 (69%), Positives = 91/108 (84%)
Frame = +2
Query: 11 YNINLKWNKPNDLNQTCLWHCRLGHINENRIKKLHSGGILEGFDYESYDKCESCLLGKMT 190
YNIN K +PNDLN T +WHCRLGHINE R++KLH G+L FD+ES++ CESCLLGKMT
Sbjct: 309 YNINAKRQRPNDLNPTFIWHCRLGHINEKRMEKLHRDGLLHSFDFESFETCESCLLGKMT 368
Query: 191 KTPFTGYNERASDLLGIIHTDVCGPMNTSARGGYNYFITFTDDYSRYG 334
K PFTG NERAS+LLG++HT VCG M+++A+GG+ YFITFTDD SRYG
Sbjct: 369 KAPFTGQNERASELLGLVHTHVCGSMSSTAKGGFGYFITFTDDLSRYG 416
>CAD39797.2 OSJNBa0071G03.10 [Oryza sativa Japonica Group]
Length = 948
Score = 176 bits (446), Expect = 4e-49
Identities = 75/108 (69%), Positives = 92/108 (85%)
Frame = +2
Query: 11 YNINLKWNKPNDLNQTCLWHCRLGHINENRIKKLHSGGILEGFDYESYDKCESCLLGKMT 190
YNIN K +PNDLN T +WHCRLGHINE R++KLH G+L FD+ES++ CESCLLGKMT
Sbjct: 417 YNINAKRQRPNDLNPTFIWHCRLGHINEKRMEKLHRDGLLHSFDFESFETCESCLLGKMT 476
Query: 191 KTPFTGYNERASDLLGIIHTDVCGPMNTSARGGYNYFITFTDDYSRYG 334
K PFTG +ERAS+LL ++HTDVCGPM+++AR G+ YFITFTDD+SRYG
Sbjct: 477 KAPFTGQSERASELLALVHTDVCGPMSSTARSGFGYFITFTDDFSRYG 524
>AAV85747.1 Integrase core domain, putative [Oryza sativa Japonica Group]
AAX92956.1 retrotransposon protein, putative, Ty1-copia
sub-class [Oryza sativa Japonica Group] ABA92827.2
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1184
Score = 176 bits (446), Expect = 5e-49
Identities = 74/108 (68%), Positives = 92/108 (85%)
Frame = +2
Query: 11 YNINLKWNKPNDLNQTCLWHCRLGHINENRIKKLHSGGILEGFDYESYDKCESCLLGKMT 190
YNIN K +PNDLN T +WHCRLGHINE R++K+H G+L FD+ES++ CESCLLGKMT
Sbjct: 398 YNINAKRQRPNDLNPTFIWHCRLGHINEKRMEKIHRDGLLHSFDFESFETCESCLLGKMT 457
Query: 191 KTPFTGYNERASDLLGIIHTDVCGPMNTSARGGYNYFITFTDDYSRYG 334
K PFTG +ERAS+LL ++HTDVCGPM+++ARGG+ YF TFTDD+SRYG
Sbjct: 458 KAPFTGQSERASELLALVHTDVCGPMSSTARGGFGYFFTFTDDFSRYG 505
>AAR06328.1 putative polyprotein [Oryza sativa Japonica Group]
Length = 1063
Score = 174 bits (442), Expect = 2e-48
Identities = 75/108 (69%), Positives = 92/108 (85%)
Frame = +2
Query: 11 YNINLKWNKPNDLNQTCLWHCRLGHINENRIKKLHSGGILEGFDYESYDKCESCLLGKMT 190
YNIN K PNDLN T +WHCRLGHINE R++KLH G+L FD+ES++ CESCLLGKMT
Sbjct: 514 YNINAKRQHPNDLNPTFIWHCRLGHINEKRMEKLHRDGLLHSFDFESFETCESCLLGKMT 573
Query: 191 KTPFTGYNERASDLLGIIHTDVCGPMNTSARGGYNYFITFTDDYSRYG 334
K PFTG ++RAS+LLG++HTDVCGPM+++ARGG+ YFITFTDD+SR G
Sbjct: 574 KAPFTGQSKRASELLGLVHTDVCGPMSSTARGGFGYFITFTDDFSRCG 621
>ABF97393.1 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1073
Score = 174 bits (442), Expect = 2e-48
Identities = 75/108 (69%), Positives = 92/108 (85%)
Frame = +2
Query: 11 YNINLKWNKPNDLNQTCLWHCRLGHINENRIKKLHSGGILEGFDYESYDKCESCLLGKMT 190
YNIN K PNDLN T +WHCRLGHINE R++KLH G+L FD+ES++ CESCLLGKMT
Sbjct: 514 YNINAKRQHPNDLNPTFIWHCRLGHINEKRMEKLHRDGLLHSFDFESFETCESCLLGKMT 573
Query: 191 KTPFTGYNERASDLLGIIHTDVCGPMNTSARGGYNYFITFTDDYSRYG 334
K PFTG ++RAS+LLG++HTDVCGPM+++ARGG+ YFITFTDD+SR G
Sbjct: 574 KAPFTGQSKRASELLGLVHTDVCGPMSSTARGGFGYFITFTDDFSRCG 621
>BAA22288.1 polyprotein [Oryza australiensis]
Length = 1317
Score = 174 bits (442), Expect = 2e-48
Identities = 74/108 (68%), Positives = 92/108 (85%)
Frame = +2
Query: 11 YNINLKWNKPNDLNQTCLWHCRLGHINENRIKKLHSGGILEGFDYESYDKCESCLLGKMT 190
YNIN + ND+N T +WHCRLGHIN+ R++KLH G+L FD+ES++ CESCLLGKMT
Sbjct: 422 YNINTERQLSNDINPTFIWHCRLGHINKKRMEKLHKDGLLHSFDFESFETCESCLLGKMT 481
Query: 191 KTPFTGYNERASDLLGIIHTDVCGPMNTSARGGYNYFITFTDDYSRYG 334
K PFTG++ERASDLL ++HTDVCGPM+++ARGGY YFITFTDD+SRYG
Sbjct: 482 KAPFTGHSERASDLLALVHTDVCGPMSSTARGGYQYFITFTDDFSRYG 529
>AAP44605.1 putative polyprotein [Oryza sativa Japonica Group]
Length = 1161
Score = 174 bits (441), Expect = 3e-48
Identities = 75/108 (69%), Positives = 92/108 (85%)
Frame = +2
Query: 11 YNINLKWNKPNDLNQTCLWHCRLGHINENRIKKLHSGGILEGFDYESYDKCESCLLGKMT 190
YNIN K +PN+LN T +WHC LGHINE RI+KLH G+L FD+ES+ CESCLLGKMT
Sbjct: 300 YNINAKRQRPNNLNPTFIWHCCLGHINEKRIEKLHRDGLLHSFDFESFKTCESCLLGKMT 359
Query: 191 KTPFTGYNERASDLLGIIHTDVCGPMNTSARGGYNYFITFTDDYSRYG 334
K PFTG +ERAS+LLG++HTDVCGPM+++ARGG+ YFITFTD++SRYG
Sbjct: 360 KAPFTGQSERASELLGLVHTDVCGPMSSTARGGFGYFITFTDEFSRYG 407
>ABF97047.1 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1248
Score = 174 bits (441), Expect = 3e-48
Identities = 75/108 (69%), Positives = 92/108 (85%)
Frame = +2
Query: 11 YNINLKWNKPNDLNQTCLWHCRLGHINENRIKKLHSGGILEGFDYESYDKCESCLLGKMT 190
YNIN K +PN+LN T +WHC LGHINE RI+KLH G+L FD+ES+ CESCLLGKMT
Sbjct: 387 YNINAKRQRPNNLNPTFIWHCCLGHINEKRIEKLHRDGLLHSFDFESFKTCESCLLGKMT 446
Query: 191 KTPFTGYNERASDLLGIIHTDVCGPMNTSARGGYNYFITFTDDYSRYG 334
K PFTG +ERAS+LLG++HTDVCGPM+++ARGG+ YFITFTD++SRYG
Sbjct: 447 KAPFTGQSERASELLGLVHTDVCGPMSSTARGGFGYFITFTDEFSRYG 494
>CAE04999.2 OSJNBb0093G06.7 [Oryza sativa Japonica Group]
Length = 923
Score = 169 bits (428), Expect = 1e-46
Identities = 71/108 (65%), Positives = 91/108 (84%)
Frame = +2
Query: 11 YNINLKWNKPNDLNQTCLWHCRLGHINENRIKKLHSGGILEGFDYESYDKCESCLLGKMT 190
YNIN K +PNDLN T +WHCR GHINE ++KL+ G+L F +ES++ CESCLLGKMT
Sbjct: 381 YNINAKRQRPNDLNPTFIWHCRFGHINEKCMEKLNRDGLLHSFGFESFETCESCLLGKMT 440
Query: 191 KTPFTGYNERASDLLGIIHTDVCGPMNTSARGGYNYFITFTDDYSRYG 334
K PFTG +ERAS+LLG++HTD+CGPM+++A+GG+ YFITFTDD+SRYG
Sbjct: 441 KAPFTGQSERASELLGLVHTDICGPMSSTAKGGFGYFITFTDDFSRYG 488
>ABA98367.2 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1745
Score = 168 bits (426), Expect = 3e-46
Identities = 73/108 (67%), Positives = 89/108 (82%)
Frame = +2
Query: 11 YNINLKWNKPNDLNQTCLWHCRLGHINENRIKKLHSGGILEGFDYESYDKCESCLLGKMT 190
YNIN K PNDLN T +WHCRLGHINE R++KLH G+L D+ES++ CESCLLGKMT
Sbjct: 898 YNINAKRQGPNDLNPTFIWHCRLGHINEKRMEKLHRDGLLHSLDFESFETCESCLLGKMT 957
Query: 191 KTPFTGYNERASDLLGIIHTDVCGPMNTSARGGYNYFITFTDDYSRYG 334
K PFTG +ER S+LL ++HTDVCGPM+++AR G+ YFITFTDD+SRYG
Sbjct: 958 KAPFTGQSERTSELLVLVHTDVCGPMSSTARCGFGYFITFTDDFSRYG 1005
>AAS01945.1 putative polyprotein [Oryza sativa Japonica Group]
Length = 1084
Score = 168 bits (425), Expect = 4e-46
Identities = 74/108 (68%), Positives = 90/108 (83%)
Frame = +2
Query: 11 YNINLKWNKPNDLNQTCLWHCRLGHINENRIKKLHSGGILEGFDYESYDKCESCLLGKMT 190
YNIN K PN LN T +WHCRLGHINE R++KLH G+L FD+ES+ ESCLLGKMT
Sbjct: 401 YNINAKRQCPNYLNPTFIWHCRLGHINEKRMEKLHRDGLLHSFDFESFKTYESCLLGKMT 460
Query: 191 KTPFTGYNERASDLLGIIHTDVCGPMNTSARGGYNYFITFTDDYSRYG 334
K PFTG +ERAS+LLG++HTDVCGPM+++ARGG+ YFITFTDD+S+YG
Sbjct: 461 KGPFTGQSERASELLGLVHTDVCGPMSSTARGGFGYFITFTDDFSKYG 508
>ABF97213.1 retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1142
Score = 168 bits (425), Expect = 4e-46
Identities = 74/108 (68%), Positives = 90/108 (83%)
Frame = +2
Query: 11 YNINLKWNKPNDLNQTCLWHCRLGHINENRIKKLHSGGILEGFDYESYDKCESCLLGKMT 190
YNIN K PN LN T +WHCRLGHINE R++KLH G+L FD+ES+ ESCLLGKMT
Sbjct: 474 YNINAKRQCPNYLNPTFIWHCRLGHINEKRMEKLHRDGLLHSFDFESFKTYESCLLGKMT 533
Query: 191 KTPFTGYNERASDLLGIIHTDVCGPMNTSARGGYNYFITFTDDYSRYG 334
K PFTG +ERAS+LLG++HTDVCGPM+++ARGG+ YFITFTDD+S+YG
Sbjct: 534 KGPFTGQSERASELLGLVHTDVCGPMSSTARGGFGYFITFTDDFSKYG 581
>CAE03845.1 OSJNBb0089K06.4 [Oryza sativa Japonica Group]
Length = 873
Score = 165 bits (418), Expect = 3e-45
Identities = 71/107 (66%), Positives = 89/107 (83%)
Frame = +2
Query: 11 YNINLKWNKPNDLNQTCLWHCRLGHINENRIKKLHSGGILEGFDYESYDKCESCLLGKMT 190
YNIN K +PNDLN T +WHCRLGHINE R++KLH G+L FD+ES++ E CLLGKMT
Sbjct: 216 YNINAKRQRPNDLNPTFIWHCRLGHINEKRMEKLHRDGLLHSFDFESFETYEFCLLGKMT 275
Query: 191 KTPFTGYNERASDLLGIIHTDVCGPMNTSARGGYNYFITFTDDYSRY 331
K PFTG +ER+S+LLG++H DVC PM+++ARGG+ YFITFTDD+SRY
Sbjct: 276 KAPFTGQSERSSELLGLVHIDVCEPMSSTARGGFGYFITFTDDFSRY 322
>KYP42262.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
[Cajanus cajan]
Length = 656
Score = 161 bits (408), Expect = 2e-44
Identities = 72/105 (68%), Positives = 84/105 (80%)
Frame = +2
Query: 20 NLKWNKPNDLNQTCLWHCRLGHINENRIKKLHSGGILEGFDYESYDKCESCLLGKMTKTP 199
N+K + + +N+T LWHCRLGHI E RI KLH G L+ +DYESY CESCL GKMTK+P
Sbjct: 351 NVKRKRDDQVNKTYLWHCRLGHIGEKRINKLHKEGYLDQYDYESYTTCESCLKGKMTKSP 410
Query: 200 FTGYNERASDLLGIIHTDVCGPMNTSARGGYNYFITFTDDYSRYG 334
FTG ERAS+LLG+IHTDVCGPM A+GGY+YFITFTDD SRYG
Sbjct: 411 FTGKGERASELLGLIHTDVCGPMKIQAKGGYSYFITFTDDMSRYG 455
>KIO93942.1 hypothetical protein QP38_2410 [Lactobacillus brevis]
Length = 321
Score = 152 bits (385), Expect = 2e-43
Identities = 71/108 (65%), Positives = 83/108 (76%)
Frame = +2
Query: 11 YNINLKWNKPNDLNQTCLWHCRLGHINENRIKKLHSGGILEGFDYESYDKCESCLLGKMT 190
+NI K + N+ + LWHCRLGHI R+KKLHS G+LE D+ES D CE CL+GKMT
Sbjct: 212 HNIETKRCRVNNDSAMFLWHCRLGHIGVKRMKKLHSDGLLESLDFESLDTCEPCLMGKMT 271
Query: 191 KTPFTGYNERASDLLGIIHTDVCGPMNTSARGGYNYFITFTDDYSRYG 334
KTPF+G ERASDLL IIHTDVCGPM+ ARGG+ YF+TFTDD SRYG
Sbjct: 272 KTPFSGTMERASDLLEIIHTDVCGPMSVEARGGHCYFLTFTDDLSRYG 319