BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum23_contig00017936
         (1762 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

XP_019186766.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   562   0.0  
CDP07347.1 unnamed protein product [Coffea canephora]                 558   0.0  
XP_019244907.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   549   0.0  
XP_009798870.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   548   0.0  
OIT03965.1 rna uridine synthase 2, chloroplastic [Nicotiana atte...   547   0.0  
XP_016568333.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   545   0.0  
XP_016492071.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   545   0.0  
XP_016568332.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   544   0.0  
XP_016493442.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   544   0.0  
XP_009620048.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   544   0.0  
XP_019244906.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   543   0.0  
XP_019244908.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   540   0.0  
XP_010320443.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   539   0.0  
XP_004238386.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   538   0.0  
XP_006342081.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   535   0.0  
XP_018808134.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   535   0.0  
XP_015073900.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   534   0.0  
XP_015073899.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   533   0.0  
XP_010241330.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   531   0.0  
XP_010241329.1 PREDICTED: RNA pseudouridine synthase 2, chloropl...   530   0.0  

>XP_019186766.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Ipomoea nil]
          Length = 453

 Score =  562 bits (1448), Expect = 0.0
 Identities = 286/442 (64%), Positives = 347/442 (78%), Gaps = 17/442 (3%)
 Frame = +3

Query: 222  DTEENTMFSSLNSSIL--------PPKTPHFLESNSIPRLFSCFKTSFSTNPCPETSPKP 377
            D E   M  +LNS+ L        P  T  +   +++  +F  F  S  +N  PE  P  
Sbjct: 15   DRERKKMVLALNSNSLSLSLLARSPRATASYGRISNL--IFRAFSKSAPSNARPEPIP-- 70

Query: 378  ISSNLGNFSGVTLEDAVELNAKKLRVDAWICSKISGISRARVQSSIKSGLVSVNGRQIDK 557
             +  + N+SGV LE+ VE ++ KLR+D+WI S+I G+SRARVQSSI+SGLV+VNGR IDK
Sbjct: 71   -AHQITNYSGVKLEETVEPSSGKLRLDSWISSRIDGVSRARVQSSIRSGLVTVNGRIIDK 129

Query: 558  SSYMVRSGDKVNCTIAEMQQLKAEPEEMPLDIVYEDAHLLVIHKPAHLVVHPAPGNATGT 737
             S+ V+ GDKVNCTIAE+Q L AEPE+MPLDIVYED H+LV++KPAH+VVHPAPGN TGT
Sbjct: 130  VSHTVKRGDKVNCTIAELQPLTAEPEDMPLDIVYEDDHVLVVNKPAHMVVHPAPGNPTGT 189

Query: 738  LVNGILHHCSLPTVSYTSQDIPSEDDDASDEELN---------GGVCSGESDASIRPGIV 890
            LVNGILHHCSLP  S+  Q++ S+ + A D+EL+         GG  S   +ASIRPGIV
Sbjct: 190  LVNGILHHCSLPVASFPYQEVLSDGEAALDDELSTFSSEQDYVGGDYSAIGEASIRPGIV 249

Query: 891  HRLDKGTSGLLVVAKDEHSHAHLAEQFKSHTIKRIYISLTCGIPSPASGRIDVPIGRDSN 1070
            HRLDKGTSGLLVVAKDE+SHAHLAEQFK H+IKR+Y++LTCG+P+PASGRID+PIGRD N
Sbjct: 250  HRLDKGTSGLLVVAKDEYSHAHLAEQFKKHSIKRVYVALTCGVPTPASGRIDIPIGRDPN 309

Query: 1071 NRLRMVAVSGSSKSGRTRHAASRYRVIEILAGGGSALVEWKLETGRTHQIRAHAKYLGIP 1250
            NRLRM A+SG SK+G+TRHAASRY+VIEILAGGGSALVEW+LETGRTHQIRAHAKYLGIP
Sbjct: 310  NRLRMAAISGFSKNGKTRHAASRYKVIEILAGGGSALVEWRLETGRTHQIRAHAKYLGIP 369

Query: 1251 LLGDEVYGGTKGMALALLQPKTMPTVRGKLMEMLSKLERPCLHALTLGFQHPHTGENMNF 1430
            LLGDEVYGGTK MAL+LLQ +      GKL++++S+LERPCLHALTLGF+HP TGEN++F
Sbjct: 370  LLGDEVYGGTKSMALSLLQQRNPSEFHGKLLQLISRLERPCLHALTLGFRHPKTGENVHF 429

Query: 1431 SQLPPEDFAAVLTQLREFSKEK 1496
            +QLPP DFA VL+ LR  S EK
Sbjct: 430  TQLPPTDFAEVLSDLRTISTEK 451


>CDP07347.1 unnamed protein product [Coffea canephora]
          Length = 442

 Score =  558 bits (1439), Expect = 0.0
 Identities = 275/417 (65%), Positives = 338/417 (81%), Gaps = 15/417 (3%)
 Frame = +3

Query: 300  NSIPRLFSCFKTSFSTN--PCPETS---PKPISSNLG-NFSGVTLEDAVELNAKKLRVDA 461
            N IP+  S    S   N   C  ++   P+PIS     NFSGV L++ V++ ++KLR+D+
Sbjct: 22   NIIPKPLSVISLSRLVNVKACTTSAGGNPQPISDRRTINFSGVKLQETVDVKSEKLRLDS 81

Query: 462  WICSKISGISRARVQSSIKSGLVSVNGRQIDKSSYMVRSGDKVNCTIAEMQQLKAEPEEM 641
            W+ S+I GISRARVQSSI+SGLVSVNGR I+K S+MVR GDKVNCTI+E+QQL+AEPE++
Sbjct: 82   WVSSRIHGISRARVQSSIRSGLVSVNGRIINKVSHMVRGGDKVNCTISELQQLRAEPEDI 141

Query: 642  PLDIVYEDAHLLVIHKPAHLVVHPAPGNATGTLVNGILHHCSLPTVSYTSQDIPSEDDDA 821
            PLDIVYED HLLV++KPAH+VVHPAPGN +GTLVNGILHHCSLP +S  S+++  E +DA
Sbjct: 142  PLDIVYEDDHLLVVNKPAHMVVHPAPGNTSGTLVNGILHHCSLPMLSLASEEVHLEPEDA 201

Query: 822  SDEEL---------NGGVCSGESDASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLAEQFK 974
            SD+E          NGG  S  S+ASIRPGIVHRLDKGTSGLLVVAKDEHSH+HLAEQFK
Sbjct: 202  SDDEFIAFPRAPKDNGGASSRTSEASIRPGIVHRLDKGTSGLLVVAKDEHSHSHLAEQFK 261

Query: 975  SHTIKRIYISLTCGIPSPASGRIDVPIGRDSNNRLRMVAVSGSSKSGRTRHAASRYRVIE 1154
            + TIKR+Y+SLTCG+PSP SGR+D+P+GRDSNNR+RM    GS+ S +TR+AASRY V+E
Sbjct: 262  NRTIKRVYVSLTCGVPSPVSGRVDIPVGRDSNNRIRMAVFDGSTHSQKTRNAASRYSVVE 321

Query: 1155 ILAGGGSALVEWKLETGRTHQIRAHAKYLGIPLLGDEVYGGTKGMALALLQPKTMPTVRG 1334
            +LAGGGSALVEWKLETGRTHQIR HAKY+G+PL+GDE+YGGTKGMAL+LLQP+T  + R 
Sbjct: 322  VLAGGGSALVEWKLETGRTHQIRVHAKYMGVPLMGDELYGGTKGMALSLLQPRTPSSFRE 381

Query: 1335 KLMEMLSKLERPCLHALTLGFQHPHTGENMNFSQLPPEDFAAVLTQLREFSKEKAIR 1505
             L +++ KLERPCLHAL+LGF HP+T ENM+FSQ+PP DFA +LTQLR+   EK  R
Sbjct: 382  NLQQLICKLERPCLHALSLGFTHPYTLENMHFSQMPPADFAEILTQLRDIRAEKVSR 438


>XP_019244907.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2
            [Nicotiana attenuata]
          Length = 440

 Score =  549 bits (1415), Expect = 0.0
 Identities = 274/414 (66%), Positives = 334/414 (80%), Gaps = 9/414 (2%)
 Frame = +3

Query: 297  SNSIPRLFSCFKTSFSTNPCPETSPKPISSNLGNFSGVTLEDAVELNAKKLRVDAWICSK 476
            S+ I R FS F     +    + SP  I S   N+SGV LE+ V++   KLR+D+W+ S+
Sbjct: 25   SSFIVRAFSKFPGDSDS----DDSPDEIQSRRSNYSGVKLEETVDVKTGKLRLDSWVSSR 80

Query: 477  ISGISRARVQSSIKSGLVSVNGRQIDKSSYMVRSGDKVNCTIAEMQQLKAEPEEMPLDIV 656
            I+GISRARVQSSI+SGLVSVNGR  DK S+ V+ GDKVNCTIA+++ L+AEPE++PLDIV
Sbjct: 81   INGISRARVQSSIRSGLVSVNGRVTDKVSHTVKGGDKVNCTIADLKPLRAEPEDIPLDIV 140

Query: 657  YEDAHLLVIHKPAHLVVHPAPGNATGTLVNGILHHCSLPTVSYTSQDIPSEDDDASDEEL 836
            YED H+LV++KPAH+VVHPAPGNATGTLV+GILHHCSLPTVS+  +++ S+ +D SD+EL
Sbjct: 141  YEDDHVLVVNKPAHMVVHPAPGNATGTLVSGILHHCSLPTVSFQGEEVLSDVEDTSDDEL 200

Query: 837  N---------GGVCSGESDASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLAEQFKSHTIK 989
            N         G   S   + S+RPGIVHRLDKGTSGLLVVAK E S A+LAEQFK HTIK
Sbjct: 201  NLFPANQSPYGVDSSVMREPSVRPGIVHRLDKGTSGLLVVAKTEQSLANLAEQFKKHTIK 260

Query: 990  RIYISLTCGIPSPASGRIDVPIGRDSNNRLRMVAVSGSSKSGRTRHAASRYRVIEILAGG 1169
            R+Y+S+TCG+P+  SGRID+PIGRDSNNR+RMVA+ GS K GR R+AASRY+VIE LAGG
Sbjct: 261  RVYVSITCGVPTSVSGRIDIPIGRDSNNRIRMVAIPGSHKGGRARNAASRYKVIEKLAGG 320

Query: 1170 GSALVEWKLETGRTHQIRAHAKYLGIPLLGDEVYGGTKGMALALLQPKTMPTVRGKLMEM 1349
            GSALVEW+LETGRTHQIRAHAKYLGIPLLGDEVYGGTK MAL+LLQPKT P   GKL ++
Sbjct: 321  GSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKNMALSLLQPKTPPRSHGKLSQL 380

Query: 1350 LSKLERPCLHALTLGFQHPHTGENMNFSQLPPEDFAAVLTQLREFSKEKAIR*H 1511
            +S +ERPCLHALTLGF+HP+TGEN++F++LPP DFA VL++LR  S EK  R H
Sbjct: 381  ISGIERPCLHALTLGFKHPYTGENIHFTRLPPADFAEVLSELRAISTEKVTRLH 434


>XP_009798870.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Nicotiana
            sylvestris]
          Length = 431

 Score =  548 bits (1412), Expect = 0.0
 Identities = 275/430 (63%), Positives = 343/430 (79%), Gaps = 12/430 (2%)
 Frame = +3

Query: 249  SLNSS--ILPPKTPH-FLESNSIPRLFSCFKTSFSTNPCPETSPKPISSNLGNFSGVTLE 419
            +LNS+   +PP+ P  F  S     +F  F + F  +   + SP  I+    N+SGV LE
Sbjct: 3    ALNSTSIFVPPQNPKPFSFSRVSSFIFRAF-SKFPGDSDSDDSPSEITGRRSNYSGVKLE 61

Query: 420  DAVELNAKKLRVDAWICSKISGISRARVQSSIKSGLVSVNGRQIDKSSYMVRSGDKVNCT 599
            + V++   KLR+D+W+ S+I+GISRARVQSSI+SGLVSVNGR  DK S+ V+ GDKVNCT
Sbjct: 62   ETVDVKTGKLRLDSWVSSRINGISRARVQSSIRSGLVSVNGRVTDKVSHTVKGGDKVNCT 121

Query: 600  IAEMQQLKAEPEEMPLDIVYEDAHLLVIHKPAHLVVHPAPGNATGTLVNGILHHCSLPTV 779
            IA+++ L+AEPE++PLDIVYED H+LV++KPAH+VVHPAPGNATGTLV+GILHHCSLPTV
Sbjct: 122  IADLKPLRAEPEDIPLDIVYEDDHVLVVNKPAHMVVHPAPGNATGTLVSGILHHCSLPTV 181

Query: 780  SYTSQDIPSEDDDASDEELN---------GGVCSGESDASIRPGIVHRLDKGTSGLLVVA 932
            S+  +++ S+ +D SD+ELN         G   S   + S+RPGIVHRLDKGTSGLLVVA
Sbjct: 182  SFPGEEVLSDVEDDSDDELNLFSTDQSPYGVDSSVVCEPSVRPGIVHRLDKGTSGLLVVA 241

Query: 933  KDEHSHAHLAEQFKSHTIKRIYISLTCGIPSPASGRIDVPIGRDSNNRLRMVAVSGSSKS 1112
            K E S A+LAEQFK HTIKR+Y+S+TCG+P+  SGRID+PIGRDSNNR+RM+A+ GS K 
Sbjct: 242  KTEQSLANLAEQFKKHTIKRVYVSITCGVPTSVSGRIDIPIGRDSNNRIRMIAIPGSHKG 301

Query: 1113 GRTRHAASRYRVIEILAGGGSALVEWKLETGRTHQIRAHAKYLGIPLLGDEVYGGTKGMA 1292
            GR R+AASRY+VIE LAGGGSALVEW+LETGRTHQIRAHAKYLGIPLLGDEVYGGTK MA
Sbjct: 302  GRARNAASRYKVIEKLAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKNMA 361

Query: 1293 LALLQPKTMPTVRGKLMEMLSKLERPCLHALTLGFQHPHTGENMNFSQLPPEDFAAVLTQ 1472
            L+LLQPKT P   GKL +++S +ERPCLHALTLGF+HP+TGEN++F++LPP DFA VL++
Sbjct: 362  LSLLQPKTPPRSHGKLSQLISGIERPCLHALTLGFRHPYTGENIHFTRLPPADFAEVLSE 421

Query: 1473 LREFSKEKAI 1502
            LR  S EK +
Sbjct: 422  LRAISTEKVL 431


>OIT03965.1 rna uridine synthase 2, chloroplastic [Nicotiana attenuata]
          Length = 431

 Score =  547 bits (1409), Expect = 0.0
 Identities = 272/411 (66%), Positives = 333/411 (81%), Gaps = 9/411 (2%)
 Frame = +3

Query: 297  SNSIPRLFSCFKTSFSTNPCPETSPKPISSNLGNFSGVTLEDAVELNAKKLRVDAWICSK 476
            S+ I R FS F     +    + SP  I S   N+SGV LE+ V++   KLR+D+W+ S+
Sbjct: 25   SSFIVRAFSKFPGDSDS----DDSPDEIQSRRSNYSGVKLEETVDVKTGKLRLDSWVSSR 80

Query: 477  ISGISRARVQSSIKSGLVSVNGRQIDKSSYMVRSGDKVNCTIAEMQQLKAEPEEMPLDIV 656
            I+GISRARVQSSI+SGLVSVNGR  DK S+ V+ GDKVNCTIA+++ L+AEPE++PLDIV
Sbjct: 81   INGISRARVQSSIRSGLVSVNGRVTDKVSHTVKGGDKVNCTIADLKPLRAEPEDIPLDIV 140

Query: 657  YEDAHLLVIHKPAHLVVHPAPGNATGTLVNGILHHCSLPTVSYTSQDIPSEDDDASDEEL 836
            YED H+LV++KPAH+VVHPAPGNATGTLV+GILHHCSLPTVS+  +++ S+ +D SD+EL
Sbjct: 141  YEDDHVLVVNKPAHMVVHPAPGNATGTLVSGILHHCSLPTVSFQGEEVLSDVEDTSDDEL 200

Query: 837  N---------GGVCSGESDASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLAEQFKSHTIK 989
            N         G   S   + S+RPGIVHRLDKGTSGLLVVAK E S A+LAEQFK HTIK
Sbjct: 201  NLFPANQSPYGVDSSVMREPSVRPGIVHRLDKGTSGLLVVAKTEQSLANLAEQFKKHTIK 260

Query: 990  RIYISLTCGIPSPASGRIDVPIGRDSNNRLRMVAVSGSSKSGRTRHAASRYRVIEILAGG 1169
            R+Y+S+TCG+P+  SGRID+PIGRDSNNR+RMVA+ GS K GR R+AASRY+VIE LAGG
Sbjct: 261  RVYVSITCGVPTSVSGRIDIPIGRDSNNRIRMVAIPGSHKGGRARNAASRYKVIEKLAGG 320

Query: 1170 GSALVEWKLETGRTHQIRAHAKYLGIPLLGDEVYGGTKGMALALLQPKTMPTVRGKLMEM 1349
            GSALVEW+LETGRTHQIRAHAKYLGIPLLGDEVYGGTK MAL+LLQPKT P   GKL ++
Sbjct: 321  GSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKNMALSLLQPKTPPRSHGKLSQL 380

Query: 1350 LSKLERPCLHALTLGFQHPHTGENMNFSQLPPEDFAAVLTQLREFSKEKAI 1502
            +S +ERPCLHALTLGF+HP+TGEN++F++LPP DFA VL++LR  S EK +
Sbjct: 381  ISGIERPCLHALTLGFKHPYTGENIHFTRLPPADFAEVLSELRAISTEKVL 431


>XP_016568333.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2
            [Capsicum annuum]
          Length = 424

 Score =  545 bits (1403), Expect = 0.0
 Identities = 265/404 (65%), Positives = 330/404 (81%), Gaps = 2/404 (0%)
 Frame = +3

Query: 297  SNSIPRLFSCFKTSFSTNPCPETSPKPISSNLGNFSGVTLEDAVELNAKKLRVDAWICSK 476
            S  I R FS F    ++    + SP  I+    N+SGV LE+ V+ N  KLR+D WI S+
Sbjct: 25   STFICRAFSKFPGDSNS----DDSPDEITGRRCNYSGVKLEETVDGNTGKLRLDCWISSR 80

Query: 477  ISGISRARVQSSIKSGLVSVNGRQIDKSSYMVRSGDKVNCTIAEMQQLKAEPEEMPLDIV 656
            I G+SRARVQSSI+SGLVSVNGR  DK S+ V++GDKVNCTIA+++ L+AEPE++PLDIV
Sbjct: 81   IDGVSRARVQSSIRSGLVSVNGRVTDKVSHKVKAGDKVNCTIADLKPLRAEPEDIPLDIV 140

Query: 657  YEDAHLLVIHKPAHLVVHPAPGNATGTLVNGILHHCSLPTVSYTSQDIPSEDDDASDEEL 836
            YED H+LV++KPAH+VVHPAPGNATGTLV+GILHHCSLPT S+  +++ S+ +DASD+EL
Sbjct: 141  YEDEHVLVVNKPAHMVVHPAPGNATGTLVSGILHHCSLPTCSFLGEEVLSDVEDASDDEL 200

Query: 837  NGGVCSGE--SDASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLAEQFKSHTIKRIYISLT 1010
            N          + S+RPGIVHRLDKGTSGLLVVAK+EHS   LAEQFK HTIKR+Y+S+T
Sbjct: 201  NVSPYDSSVMCEPSVRPGIVHRLDKGTSGLLVVAKNEHSLVDLAEQFKKHTIKRVYVSIT 260

Query: 1011 CGIPSPASGRIDVPIGRDSNNRLRMVAVSGSSKSGRTRHAASRYRVIEILAGGGSALVEW 1190
            CG+P+  SGR+D+PIGRDSNNR+RM A+ GS KSG++RHA SRY+VIE LAGGGSALVEW
Sbjct: 261  CGVPTSVSGRVDIPIGRDSNNRIRMAAIPGSPKSGKSRHAVSRYKVIEELAGGGSALVEW 320

Query: 1191 KLETGRTHQIRAHAKYLGIPLLGDEVYGGTKGMALALLQPKTMPTVRGKLMEMLSKLERP 1370
            +LETGRTHQIRAHAKYLGIPL+GDEVYGGTK MAL+LLQPKT P   GKL +++S++ERP
Sbjct: 321  RLETGRTHQIRAHAKYLGIPLMGDEVYGGTKNMALSLLQPKTPPRFHGKLSQLVSRIERP 380

Query: 1371 CLHALTLGFQHPHTGENMNFSQLPPEDFAAVLTQLREFSKEKAI 1502
            CLHALTLGF+HP TGEN++F++LPP DFA +L++LR  + EK +
Sbjct: 381  CLHALTLGFRHPFTGENIHFTRLPPPDFAEILSELRAINTEKVL 424


>XP_016492071.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like
            [Nicotiana tabacum]
          Length = 431

 Score =  545 bits (1403), Expect = 0.0
 Identities = 274/430 (63%), Positives = 342/430 (79%), Gaps = 12/430 (2%)
 Frame = +3

Query: 249  SLNSS--ILPPKTPH-FLESNSIPRLFSCFKTSFSTNPCPETSPKPISSNLGNFSGVTLE 419
            +LNS+   +PP+ P  F  S     +F  F + F  +   + SP  I+    N+SGV LE
Sbjct: 3    ALNSTSIFVPPQNPKPFSFSRVSSFIFRAF-SKFPGDSDSDDSPGEITGRRSNYSGVKLE 61

Query: 420  DAVELNAKKLRVDAWICSKISGISRARVQSSIKSGLVSVNGRQIDKSSYMVRSGDKVNCT 599
            + V++   KLR+D+W+ S+I+GISRARVQSSI+SGLVSVNGR  DK S+ V+ GDKVNCT
Sbjct: 62   ETVDVKTGKLRLDSWVSSRINGISRARVQSSIRSGLVSVNGRVTDKVSHTVKGGDKVNCT 121

Query: 600  IAEMQQLKAEPEEMPLDIVYEDAHLLVIHKPAHLVVHPAPGNATGTLVNGILHHCSLPTV 779
            IA+++ L+AEPE++PLDIVYED H+LV++KPAH+VVHPAPGNATGTLV+GILHHCSLPTV
Sbjct: 122  IADLKPLRAEPEDIPLDIVYEDDHVLVVNKPAHMVVHPAPGNATGTLVSGILHHCSLPTV 181

Query: 780  SYTSQDIPSEDDDASDEELN---------GGVCSGESDASIRPGIVHRLDKGTSGLLVVA 932
            S+  +++ S+ +D S +ELN         G   S   + S+RPGIVHRLDKGTSGLLVVA
Sbjct: 182  SFPGEEVLSDVEDDSHDELNLFSTDQSPYGVDSSVVCEPSVRPGIVHRLDKGTSGLLVVA 241

Query: 933  KDEHSHAHLAEQFKSHTIKRIYISLTCGIPSPASGRIDVPIGRDSNNRLRMVAVSGSSKS 1112
            K E S A+LAEQFK HTIKR+Y+S+TCG+P+  SGRID+PIGRDSNNR+RM+A+ GS K 
Sbjct: 242  KTEQSLANLAEQFKKHTIKRVYVSITCGVPTSVSGRIDIPIGRDSNNRIRMIAIPGSHKG 301

Query: 1113 GRTRHAASRYRVIEILAGGGSALVEWKLETGRTHQIRAHAKYLGIPLLGDEVYGGTKGMA 1292
            GR R+AASRY+VIE LAGGGSALVEW+LETGRTHQIRAHAKYLGIPLLGDEVYGGTK MA
Sbjct: 302  GRARNAASRYKVIEKLAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKNMA 361

Query: 1293 LALLQPKTMPTVRGKLMEMLSKLERPCLHALTLGFQHPHTGENMNFSQLPPEDFAAVLTQ 1472
            L+LLQPKT P   GKL +++S +ERPCLHALTLGF+HP+TGEN++F++LPP DFA VL++
Sbjct: 362  LSLLQPKTHPRSHGKLSQLISGIERPCLHALTLGFRHPYTGENIHFTRLPPADFAEVLSE 421

Query: 1473 LREFSKEKAI 1502
            LR  S EK +
Sbjct: 422  LRAISTEKVL 431


>XP_016568332.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Capsicum annuum]
          Length = 429

 Score =  544 bits (1401), Expect = 0.0
 Identities = 265/402 (65%), Positives = 329/402 (81%), Gaps = 2/402 (0%)
 Frame = +3

Query: 297  SNSIPRLFSCFKTSFSTNPCPETSPKPISSNLGNFSGVTLEDAVELNAKKLRVDAWICSK 476
            S  I R FS F    ++    + SP  I+    N+SGV LE+ V+ N  KLR+D WI S+
Sbjct: 25   STFICRAFSKFPGDSNS----DDSPDEITGRRCNYSGVKLEETVDGNTGKLRLDCWISSR 80

Query: 477  ISGISRARVQSSIKSGLVSVNGRQIDKSSYMVRSGDKVNCTIAEMQQLKAEPEEMPLDIV 656
            I G+SRARVQSSI+SGLVSVNGR  DK S+ V++GDKVNCTIA+++ L+AEPE++PLDIV
Sbjct: 81   IDGVSRARVQSSIRSGLVSVNGRVTDKVSHKVKAGDKVNCTIADLKPLRAEPEDIPLDIV 140

Query: 657  YEDAHLLVIHKPAHLVVHPAPGNATGTLVNGILHHCSLPTVSYTSQDIPSEDDDASDEEL 836
            YED H+LV++KPAH+VVHPAPGNATGTLV+GILHHCSLPT S+  +++ S+ +DASD+EL
Sbjct: 141  YEDEHVLVVNKPAHMVVHPAPGNATGTLVSGILHHCSLPTCSFLGEEVLSDVEDASDDEL 200

Query: 837  NGGVCSGE--SDASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLAEQFKSHTIKRIYISLT 1010
            N          + S+RPGIVHRLDKGTSGLLVVAK+EHS   LAEQFK HTIKR+Y+S+T
Sbjct: 201  NVSPYDSSVMCEPSVRPGIVHRLDKGTSGLLVVAKNEHSLVDLAEQFKKHTIKRVYVSIT 260

Query: 1011 CGIPSPASGRIDVPIGRDSNNRLRMVAVSGSSKSGRTRHAASRYRVIEILAGGGSALVEW 1190
            CG+P+  SGR+D+PIGRDSNNR+RM A+ GS KSG++RHA SRY+VIE LAGGGSALVEW
Sbjct: 261  CGVPTSVSGRVDIPIGRDSNNRIRMAAIPGSPKSGKSRHAVSRYKVIEELAGGGSALVEW 320

Query: 1191 KLETGRTHQIRAHAKYLGIPLLGDEVYGGTKGMALALLQPKTMPTVRGKLMEMLSKLERP 1370
            +LETGRTHQIRAHAKYLGIPL+GDEVYGGTK MAL+LLQPKT P   GKL +++S++ERP
Sbjct: 321  RLETGRTHQIRAHAKYLGIPLMGDEVYGGTKNMALSLLQPKTPPRFHGKLSQLVSRIERP 380

Query: 1371 CLHALTLGFQHPHTGENMNFSQLPPEDFAAVLTQLREFSKEK 1496
            CLHALTLGF+HP TGEN++F++LPP DFA +L++LR  + EK
Sbjct: 381  CLHALTLGFRHPFTGENIHFTRLPPPDFAEILSELRAINTEK 422


>XP_016493442.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic-like
            [Nicotiana tabacum]
          Length = 431

 Score =  544 bits (1401), Expect = 0.0
 Identities = 271/411 (65%), Positives = 330/411 (80%), Gaps = 9/411 (2%)
 Frame = +3

Query: 297  SNSIPRLFSCFKTSFSTNPCPETSPKPISSNLGNFSGVTLEDAVELNAKKLRVDAWICSK 476
            S+ I R FS F     +    + SP  I S   N+SGV LE+ V++   KLR+D+W+ S+
Sbjct: 25   SSFIIRAFSKFPGDSDS----DDSPDEIQSRRSNYSGVKLEETVDIKTGKLRLDSWVSSR 80

Query: 477  ISGISRARVQSSIKSGLVSVNGRQIDKSSYMVRSGDKVNCTIAEMQQLKAEPEEMPLDIV 656
            I GISRARVQSSI+SGLVSVNGR  DK S+ V+ GDKVNCTIA+++ L+AEPE++PLDIV
Sbjct: 81   IDGISRARVQSSIRSGLVSVNGRVTDKVSHTVKGGDKVNCTIADLKPLRAEPEDIPLDIV 140

Query: 657  YEDAHLLVIHKPAHLVVHPAPGNATGTLVNGILHHCSLPTVSYTSQDIPSEDDDASDEEL 836
            YED H+LV++KPAH+VVHPAPGN TGTLV+GILHHCSLPT+S+  +++ S+ +DAS +EL
Sbjct: 141  YEDDHVLVVNKPAHMVVHPAPGNVTGTLVSGILHHCSLPTISFPGEEVLSDVEDASGDEL 200

Query: 837  N---------GGVCSGESDASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLAEQFKSHTIK 989
            N         G   S   + SIRPGIVHRLDKGTSGLLVVAK E S A+LAEQFK HTIK
Sbjct: 201  NMFSADQSPNGVDASRMYEPSIRPGIVHRLDKGTSGLLVVAKTEQSLANLAEQFKKHTIK 260

Query: 990  RIYISLTCGIPSPASGRIDVPIGRDSNNRLRMVAVSGSSKSGRTRHAASRYRVIEILAGG 1169
            R+Y+S+TCG+P+  SGRID+PIGRDSNNR+RMVA+ GS K GR R+AASRY+VIE LAGG
Sbjct: 261  RVYVSITCGVPTSVSGRIDIPIGRDSNNRIRMVAIPGSHKGGRARNAASRYKVIEKLAGG 320

Query: 1170 GSALVEWKLETGRTHQIRAHAKYLGIPLLGDEVYGGTKGMALALLQPKTMPTVRGKLMEM 1349
            GSALVEW+LETGRTHQIRAHAKYLGIPLLGDEVYGGTK MAL+LLQPKT P   G L ++
Sbjct: 321  GSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKNMALSLLQPKTPPRSHGNLSQL 380

Query: 1350 LSKLERPCLHALTLGFQHPHTGENMNFSQLPPEDFAAVLTQLREFSKEKAI 1502
            +S +ERPCLHALTLGF+HP+TGEN++F++LPP DFA VLT+LR  S EK +
Sbjct: 381  ISGIERPCLHALTLGFRHPYTGENIHFTRLPPADFAEVLTELRAISTEKVL 431


>XP_009620048.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic [Nicotiana
            tomentosiformis]
          Length = 431

 Score =  544 bits (1401), Expect = 0.0
 Identities = 271/411 (65%), Positives = 330/411 (80%), Gaps = 9/411 (2%)
 Frame = +3

Query: 297  SNSIPRLFSCFKTSFSTNPCPETSPKPISSNLGNFSGVTLEDAVELNAKKLRVDAWICSK 476
            S+ I R FS F     +    + SP  I S   N+SGV LE+ V++   KLR+D+W+ S+
Sbjct: 25   SSFIIRAFSKFPGDSDS----DDSPDEIQSRKSNYSGVKLEETVDIKTGKLRLDSWVSSR 80

Query: 477  ISGISRARVQSSIKSGLVSVNGRQIDKSSYMVRSGDKVNCTIAEMQQLKAEPEEMPLDIV 656
            I GISRARVQSSI+SGLVSVNGR  DK S+ V+ GDKVNCTIA+++ L+AEPE++PLDIV
Sbjct: 81   IDGISRARVQSSIRSGLVSVNGRVTDKVSHTVKGGDKVNCTIADLKPLRAEPEDIPLDIV 140

Query: 657  YEDAHLLVIHKPAHLVVHPAPGNATGTLVNGILHHCSLPTVSYTSQDIPSEDDDASDEEL 836
            YED H+LV++KPAH+VVHPAPGN TGTLV+GILHHCSLPT+S+  +++ S+ +DAS +EL
Sbjct: 141  YEDDHVLVVNKPAHMVVHPAPGNVTGTLVSGILHHCSLPTISFPGEEVLSDVEDASGDEL 200

Query: 837  N---------GGVCSGESDASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLAEQFKSHTIK 989
            N         G   S   + SIRPGIVHRLDKGTSGLLVVAK E S A+LAEQFK HTIK
Sbjct: 201  NMFSADQSPNGVDASRMYEPSIRPGIVHRLDKGTSGLLVVAKTEQSLANLAEQFKKHTIK 260

Query: 990  RIYISLTCGIPSPASGRIDVPIGRDSNNRLRMVAVSGSSKSGRTRHAASRYRVIEILAGG 1169
            R+Y+S+TCG+P+  SGRID+PIGRDSNNR+RMVA+ GS K GR R+AASRY+VIE LAGG
Sbjct: 261  RVYVSITCGVPTSVSGRIDIPIGRDSNNRIRMVAIPGSHKGGRARNAASRYKVIEKLAGG 320

Query: 1170 GSALVEWKLETGRTHQIRAHAKYLGIPLLGDEVYGGTKGMALALLQPKTMPTVRGKLMEM 1349
            GSALVEW+LETGRTHQIRAHAKYLGIPLLGDEVYGGTK MAL+LLQPKT P   G L ++
Sbjct: 321  GSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKNMALSLLQPKTPPRSHGNLSQL 380

Query: 1350 LSKLERPCLHALTLGFQHPHTGENMNFSQLPPEDFAAVLTQLREFSKEKAI 1502
            +S +ERPCLHALTLGF+HP+TGEN++F++LPP DFA VLT+LR  S EK +
Sbjct: 381  ISGIERPCLHALTLGFRHPYTGENIHFTRLPPADFAEVLTELRAISTEKVL 431


>XP_019244906.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Nicotiana attenuata]
          Length = 446

 Score =  543 bits (1398), Expect = 0.0
 Identities = 274/420 (65%), Positives = 334/420 (79%), Gaps = 15/420 (3%)
 Frame = +3

Query: 297  SNSIPRLFSCFKTSFSTNPCPETSPKPISSNLGNFSGVTLEDAVELNAKKLRVDAWICSK 476
            S+ I R FS F     +    + SP  I S   N+SGV LE+ V++   KLR+D+W+ S+
Sbjct: 25   SSFIVRAFSKFPGDSDS----DDSPDEIQSRRSNYSGVKLEETVDVKTGKLRLDSWVSSR 80

Query: 477  ISGISRARVQSSIKSGLVSVNGRQIDKSSYMVRSGDKVNCTIAEMQQLKAEPEEMPLDIV 656
            I+GISRARVQSSI+SGLVSVNGR  DK S+ V+ GDKVNCTIA+++ L+AEPE++PLDIV
Sbjct: 81   INGISRARVQSSIRSGLVSVNGRVTDKVSHTVKGGDKVNCTIADLKPLRAEPEDIPLDIV 140

Query: 657  YEDAHLLVIHKPAHLVVHPAPGNATGTLVNGILHHCSLPTVSYTSQDIPSEDDDASDEEL 836
            YED H+LV++KPAH+VVHPAPGNATGTLV+GILHHCSLPTVS+  +++ S+ +D SD+EL
Sbjct: 141  YEDDHVLVVNKPAHMVVHPAPGNATGTLVSGILHHCSLPTVSFQGEEVLSDVEDTSDDEL 200

Query: 837  N---------GGVCSGESDASIRPGIVHRLDKGTSGLLVVAK------DEHSHAHLAEQF 971
            N         G   S   + S+RPGIVHRLDKGTSGLLVVAK       E S A+LAEQF
Sbjct: 201  NLFPANQSPYGVDSSVMREPSVRPGIVHRLDKGTSGLLVVAKVVPVLQTEQSLANLAEQF 260

Query: 972  KSHTIKRIYISLTCGIPSPASGRIDVPIGRDSNNRLRMVAVSGSSKSGRTRHAASRYRVI 1151
            K HTIKR+Y+S+TCG+P+  SGRID+PIGRDSNNR+RMVA+ GS K GR R+AASRY+VI
Sbjct: 261  KKHTIKRVYVSITCGVPTSVSGRIDIPIGRDSNNRIRMVAIPGSHKGGRARNAASRYKVI 320

Query: 1152 EILAGGGSALVEWKLETGRTHQIRAHAKYLGIPLLGDEVYGGTKGMALALLQPKTMPTVR 1331
            E LAGGGSALVEW+LETGRTHQIRAHAKYLGIPLLGDEVYGGTK MAL+LLQPKT P   
Sbjct: 321  EKLAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKNMALSLLQPKTPPRSH 380

Query: 1332 GKLMEMLSKLERPCLHALTLGFQHPHTGENMNFSQLPPEDFAAVLTQLREFSKEKAIR*H 1511
            GKL +++S +ERPCLHALTLGF+HP+TGEN++F++LPP DFA VL++LR  S EK  R H
Sbjct: 381  GKLSQLISGIERPCLHALTLGFKHPYTGENIHFTRLPPADFAEVLSELRAISTEKVTRLH 440


>XP_019244908.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X3
            [Nicotiana attenuata]
          Length = 437

 Score =  540 bits (1392), Expect = 0.0
 Identities = 272/417 (65%), Positives = 333/417 (79%), Gaps = 15/417 (3%)
 Frame = +3

Query: 297  SNSIPRLFSCFKTSFSTNPCPETSPKPISSNLGNFSGVTLEDAVELNAKKLRVDAWICSK 476
            S+ I R FS F     +    + SP  I S   N+SGV LE+ V++   KLR+D+W+ S+
Sbjct: 25   SSFIVRAFSKFPGDSDS----DDSPDEIQSRRSNYSGVKLEETVDVKTGKLRLDSWVSSR 80

Query: 477  ISGISRARVQSSIKSGLVSVNGRQIDKSSYMVRSGDKVNCTIAEMQQLKAEPEEMPLDIV 656
            I+GISRARVQSSI+SGLVSVNGR  DK S+ V+ GDKVNCTIA+++ L+AEPE++PLDIV
Sbjct: 81   INGISRARVQSSIRSGLVSVNGRVTDKVSHTVKGGDKVNCTIADLKPLRAEPEDIPLDIV 140

Query: 657  YEDAHLLVIHKPAHLVVHPAPGNATGTLVNGILHHCSLPTVSYTSQDIPSEDDDASDEEL 836
            YED H+LV++KPAH+VVHPAPGNATGTLV+GILHHCSLPTVS+  +++ S+ +D SD+EL
Sbjct: 141  YEDDHVLVVNKPAHMVVHPAPGNATGTLVSGILHHCSLPTVSFQGEEVLSDVEDTSDDEL 200

Query: 837  N---------GGVCSGESDASIRPGIVHRLDKGTSGLLVVAK------DEHSHAHLAEQF 971
            N         G   S   + S+RPGIVHRLDKGTSGLLVVAK       E S A+LAEQF
Sbjct: 201  NLFPANQSPYGVDSSVMREPSVRPGIVHRLDKGTSGLLVVAKVVPVLQTEQSLANLAEQF 260

Query: 972  KSHTIKRIYISLTCGIPSPASGRIDVPIGRDSNNRLRMVAVSGSSKSGRTRHAASRYRVI 1151
            K HTIKR+Y+S+TCG+P+  SGRID+PIGRDSNNR+RMVA+ GS K GR R+AASRY+VI
Sbjct: 261  KKHTIKRVYVSITCGVPTSVSGRIDIPIGRDSNNRIRMVAIPGSHKGGRARNAASRYKVI 320

Query: 1152 EILAGGGSALVEWKLETGRTHQIRAHAKYLGIPLLGDEVYGGTKGMALALLQPKTMPTVR 1331
            E LAGGGSALVEW+LETGRTHQIRAHAKYLGIPLLGDEVYGGTK MAL+LLQPKT P   
Sbjct: 321  EKLAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKNMALSLLQPKTPPRSH 380

Query: 1332 GKLMEMLSKLERPCLHALTLGFQHPHTGENMNFSQLPPEDFAAVLTQLREFSKEKAI 1502
            GKL +++S +ERPCLHALTLGF+HP+TGEN++F++LPP DFA VL++LR  S EK +
Sbjct: 381  GKLSQLISGIERPCLHALTLGFKHPYTGENIHFTRLPPADFAEVLSELRAISTEKVL 437


>XP_010320443.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2
            [Solanum lycopersicum]
          Length = 431

 Score =  539 bits (1389), Expect = 0.0
 Identities = 260/421 (61%), Positives = 334/421 (79%), Gaps = 9/421 (2%)
 Frame = +3

Query: 267  LPPKTPHFLESNSIPRLFSCFKTSFSTNPCPETSPKPISSNLGNFSGVTLEDAVELNAKK 446
            L P+ P  +  + +        T F  +   + SP  I     N+SGV LE+ V+    K
Sbjct: 11   LLPQNPKPISLSRVSSFICRAFTKFPGDSDSDDSPDEIPGRRSNYSGVKLEETVDSKTGK 70

Query: 447  LRVDAWICSKISGISRARVQSSIKSGLVSVNGRQIDKSSYMVRSGDKVNCTIAEMQQLKA 626
            LR+D+W+ S+I G+SRARVQSSI+SGLVSVNGR  DK S+MV+ GDKV+CTIA+++ L+A
Sbjct: 71   LRLDSWVSSRIDGVSRARVQSSIRSGLVSVNGRVTDKVSHMVKGGDKVDCTIADLKPLRA 130

Query: 627  EPEEMPLDIVYEDAHLLVIHKPAHLVVHPAPGNATGTLVNGILHHCSLPTVSYTSQDIPS 806
            EPE++PLDIVYED H+LV++KPAH+VVHPAPGNATGTLV+GILHHCSLPTVS+  +++ S
Sbjct: 131  EPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVSGILHHCSLPTVSFPGEEVLS 190

Query: 807  EDDDASDEELN---------GGVCSGESDASIRPGIVHRLDKGTSGLLVVAKDEHSHAHL 959
            + +DASD+ELN             S   ++S+RPGIVHRLDKGTSGLLVVAK+EHS A L
Sbjct: 191  DGEDASDDELNIFSPNRSPNYDDSSVMCESSVRPGIVHRLDKGTSGLLVVAKNEHSLADL 250

Query: 960  AEQFKSHTIKRIYISLTCGIPSPASGRIDVPIGRDSNNRLRMVAVSGSSKSGRTRHAASR 1139
            AEQFK HTIKR+Y+S+TCG+P+  +GR+D+PIGRDSNNR+RM A+ G+ KSG++RHA SR
Sbjct: 251  AEQFKKHTIKRVYVSITCGVPASVAGRVDIPIGRDSNNRIRMAAIPGTPKSGKSRHAVSR 310

Query: 1140 YRVIEILAGGGSALVEWKLETGRTHQIRAHAKYLGIPLLGDEVYGGTKGMALALLQPKTM 1319
            Y+VIE LAGGGSALVEW+LETGRTHQIRAHAK+LGIPL+GDEVYGGTK MAL+LLQPKT 
Sbjct: 311  YKVIEKLAGGGSALVEWRLETGRTHQIRAHAKHLGIPLMGDEVYGGTKNMALSLLQPKTP 370

Query: 1320 PTVRGKLMEMLSKLERPCLHALTLGFQHPHTGENMNFSQLPPEDFAAVLTQLREFSKEKA 1499
            P   G+L +++S+++RPCLHALTLGF+HP TGEN++F++LPP DFA +L++LR    EK 
Sbjct: 371  PMFHGELSQLVSQIDRPCLHALTLGFRHPFTGENIHFTRLPPPDFAEILSELRAIKTEKV 430

Query: 1500 I 1502
            +
Sbjct: 431  L 431


>XP_004238386.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Solanum lycopersicum]
          Length = 436

 Score =  538 bits (1387), Expect = 0.0
 Identities = 260/419 (62%), Positives = 333/419 (79%), Gaps = 9/419 (2%)
 Frame = +3

Query: 267  LPPKTPHFLESNSIPRLFSCFKTSFSTNPCPETSPKPISSNLGNFSGVTLEDAVELNAKK 446
            L P+ P  +  + +        T F  +   + SP  I     N+SGV LE+ V+    K
Sbjct: 11   LLPQNPKPISLSRVSSFICRAFTKFPGDSDSDDSPDEIPGRRSNYSGVKLEETVDSKTGK 70

Query: 447  LRVDAWICSKISGISRARVQSSIKSGLVSVNGRQIDKSSYMVRSGDKVNCTIAEMQQLKA 626
            LR+D+W+ S+I G+SRARVQSSI+SGLVSVNGR  DK S+MV+ GDKV+CTIA+++ L+A
Sbjct: 71   LRLDSWVSSRIDGVSRARVQSSIRSGLVSVNGRVTDKVSHMVKGGDKVDCTIADLKPLRA 130

Query: 627  EPEEMPLDIVYEDAHLLVIHKPAHLVVHPAPGNATGTLVNGILHHCSLPTVSYTSQDIPS 806
            EPE++PLDIVYED H+LV++KPAH+VVHPAPGNATGTLV+GILHHCSLPTVS+  +++ S
Sbjct: 131  EPEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNATGTLVSGILHHCSLPTVSFPGEEVLS 190

Query: 807  EDDDASDEELN---------GGVCSGESDASIRPGIVHRLDKGTSGLLVVAKDEHSHAHL 959
            + +DASD+ELN             S   ++S+RPGIVHRLDKGTSGLLVVAK+EHS A L
Sbjct: 191  DGEDASDDELNIFSPNRSPNYDDSSVMCESSVRPGIVHRLDKGTSGLLVVAKNEHSLADL 250

Query: 960  AEQFKSHTIKRIYISLTCGIPSPASGRIDVPIGRDSNNRLRMVAVSGSSKSGRTRHAASR 1139
            AEQFK HTIKR+Y+S+TCG+P+  +GR+D+PIGRDSNNR+RM A+ G+ KSG++RHA SR
Sbjct: 251  AEQFKKHTIKRVYVSITCGVPASVAGRVDIPIGRDSNNRIRMAAIPGTPKSGKSRHAVSR 310

Query: 1140 YRVIEILAGGGSALVEWKLETGRTHQIRAHAKYLGIPLLGDEVYGGTKGMALALLQPKTM 1319
            Y+VIE LAGGGSALVEW+LETGRTHQIRAHAK+LGIPL+GDEVYGGTK MAL+LLQPKT 
Sbjct: 311  YKVIEKLAGGGSALVEWRLETGRTHQIRAHAKHLGIPLMGDEVYGGTKNMALSLLQPKTP 370

Query: 1320 PTVRGKLMEMLSKLERPCLHALTLGFQHPHTGENMNFSQLPPEDFAAVLTQLREFSKEK 1496
            P   G+L +++S+++RPCLHALTLGF+HP TGEN++F++LPP DFA +L++LR    EK
Sbjct: 371  PMFHGELSQLVSQIDRPCLHALTLGFRHPFTGENIHFTRLPPPDFAEILSELRAIKTEK 429


>XP_006342081.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2
            [Solanum tuberosum]
          Length = 431

 Score =  535 bits (1378), Expect = 0.0
 Identities = 263/425 (61%), Positives = 336/425 (79%), Gaps = 11/425 (2%)
 Frame = +3

Query: 261  SILPPKTPHFLESNSIPRLFSCFKTSFSTNPCPETSPKPISSNLGNFSGVTLEDAVELNA 440
            S+LP     F  S     +   F T F  +   + SP  I     N+SGV LE+ V+   
Sbjct: 10   SLLPQNPKPFSLSRVSSFICRAF-TKFPGDSDSDDSPDEIPGRRSNYSGVKLEETVDGKT 68

Query: 441  KKLRVDAWICSKISGISRARVQSSIKSGLVSVNGRQIDKSSYMVRSGDKVNCTIAEMQQL 620
             KLR+D+W+ S+I G+SRARVQSSI+SGLVSVNGR  DK S+MV+ GDKV+CTIA+++ L
Sbjct: 69   GKLRLDSWVSSRIDGVSRARVQSSIRSGLVSVNGRVTDKVSHMVKGGDKVDCTIADLKPL 128

Query: 621  KAEPEEMPLDIVYEDAHLLVIHKPAHLVVHPAPGNATGTLVNGILHHCSLPTVSYTSQDI 800
            +AEPE++PLDIV+ED H+LV++KPAH+VVHPAPGNATGTLV+GILHHCSLPT+S+  +++
Sbjct: 129  RAEPEDIPLDIVFEDEHVLVVNKPAHMVVHPAPGNATGTLVSGILHHCSLPTISFLGEEV 188

Query: 801  PSEDDDASDEELNGGVCSGES-----------DASIRPGIVHRLDKGTSGLLVVAKDEHS 947
             S+ +DASD+ELN  V SG             ++S+RPGIVHRLDKGTSGLLVVAK+E+S
Sbjct: 189  LSDAEDASDDELN--VFSGNRSPNYDDSSVMCESSVRPGIVHRLDKGTSGLLVVAKNENS 246

Query: 948  HAHLAEQFKSHTIKRIYISLTCGIPSPASGRIDVPIGRDSNNRLRMVAVSGSSKSGRTRH 1127
             A LAEQFK HTIKR+Y+S+TCG+P+  +GR+D+PIGRDSNNR+RM A+ G+ KSG++RH
Sbjct: 247  LASLAEQFKKHTIKRVYVSITCGVPASVAGRVDIPIGRDSNNRIRMAAIPGTPKSGKSRH 306

Query: 1128 AASRYRVIEILAGGGSALVEWKLETGRTHQIRAHAKYLGIPLLGDEVYGGTKGMALALLQ 1307
            A SRY+VIE LA GGSALVEW+LETGRTHQIRAHAKYLGIPL+GDEVYGGTK MAL+LLQ
Sbjct: 307  AVSRYKVIEKLARGGSALVEWRLETGRTHQIRAHAKYLGIPLMGDEVYGGTKNMALSLLQ 366

Query: 1308 PKTMPTVRGKLMEMLSKLERPCLHALTLGFQHPHTGENMNFSQLPPEDFAAVLTQLREFS 1487
            PKT P   GKL +++S+++RPCLHALTLGF+HP TGEN++F++LPP DFA +L+ LR  +
Sbjct: 367  PKTPPMFHGKLSQLVSQIDRPCLHALTLGFRHPFTGENIHFTRLPPPDFAEILSYLRAIN 426

Query: 1488 KEKAI 1502
             EK +
Sbjct: 427  TEKVL 431


>XP_018808134.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2
            [Juglans regia]
          Length = 446

 Score =  535 bits (1378), Expect = 0.0
 Identities = 266/417 (63%), Positives = 334/417 (80%), Gaps = 9/417 (2%)
 Frame = +3

Query: 273  PKTPHFLESNSIPRLFSCFKTSFSTNPCPETSPKPISSNLGNFSGVTLEDAVELNAKKLR 452
            P+TP    S+S+   F    +S STN   +   + ++    NF GV LED V LN+ KLR
Sbjct: 31   PRTP----SSSLRICFVASSSSGSTNS--DEDKEDLAGRRANFGGVQLEDTVSLNSGKLR 84

Query: 453  VDAWICSKISGISRARVQSSIKSGLVSVNGRQIDKSSYMVRSGDKVNCTIAEMQQLKAEP 632
            +D+WI S+I GISRARVQSSI+SGLV+VNGR +DK S+ V++GDKVNCTI+E+Q L+A P
Sbjct: 85   LDSWISSRIGGISRARVQSSIRSGLVAVNGRVVDKVSHNVKTGDKVNCTISELQPLRAVP 144

Query: 633  EEMPLDIVYEDAHLLVIHKPAHLVVHPAPGNATGTLVNGILHHCSLPTVSYTSQDIPSED 812
            E++PLDIV+ED H+LV++KPAH+VVHPAPGNATGTLVNG+LHHCS P V+++++++ S+ 
Sbjct: 145  EDIPLDIVFEDEHVLVVNKPAHMVVHPAPGNATGTLVNGVLHHCSPPVVAFSNEEVLSDA 204

Query: 813  DDASDEEL---------NGGVCSGESDASIRPGIVHRLDKGTSGLLVVAKDEHSHAHLAE 965
            +D SD+EL         N G+ S  S ASIRPGIVHRLDKGTSGLLVVAKDEHSHA+L+E
Sbjct: 205  EDISDDELSSFSAGQNPNDGLYSRRSGASIRPGIVHRLDKGTSGLLVVAKDEHSHANLSE 264

Query: 966  QFKSHTIKRIYISLTCGIPSPASGRIDVPIGRDSNNRLRMVAVSGSSKSGRTRHAASRYR 1145
            QFK HTI+R+Y+SLT G+PSP +GR++VPIGRD NNR+RM A+ GS+ S + RHAASRY+
Sbjct: 265  QFKLHTIQRLYVSLTSGVPSPMAGRVEVPIGRDLNNRIRMAAIPGSNISRQARHAASRYK 324

Query: 1146 VIEILAGGGSALVEWKLETGRTHQIRAHAKYLGIPLLGDEVYGGTKGMALALLQPKTMPT 1325
            VIEILAGG SALVEW+LETGRTHQIRAHAKYLGIPLLGDEVYGGTK MAL+LL+P+T P+
Sbjct: 325  VIEILAGGSSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTKSMALSLLRPRTPPS 384

Query: 1326 VRGKLMEMLSKLERPCLHALTLGFQHPHTGENMNFSQLPPEDFAAVLTQLREFSKEK 1496
              G+L++++S+LERPCLHAL LGF HPHT EN+ F   PP DFA +L QLR+    K
Sbjct: 385  RHGQLLQLVSRLERPCLHALALGFMHPHTMENVYFQCPPPADFAEILGQLRKIGTVK 441


>XP_015073900.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2
            [Solanum pennellii]
          Length = 431

 Score =  534 bits (1376), Expect = 0.0
 Identities = 258/421 (61%), Positives = 332/421 (78%), Gaps = 9/421 (2%)
 Frame = +3

Query: 267  LPPKTPHFLESNSIPRLFSCFKTSFSTNPCPETSPKPISSNLGNFSGVTLEDAVELNAKK 446
            L P+ P  +  + +        T F  +   + SP  I     N+SGV LE+ V+    K
Sbjct: 11   LLPQNPKPISLSRVSSFICRAFTKFPGDSDSDDSPDEIPGRRSNYSGVKLEETVDSKTGK 70

Query: 447  LRVDAWICSKISGISRARVQSSIKSGLVSVNGRQIDKSSYMVRSGDKVNCTIAEMQQLKA 626
            LR+D+W+ S+I G+SRARVQSSI+SGLV VNGR  DK S+MV+ GDKV+CTIA+++ L+A
Sbjct: 71   LRLDSWVSSRIDGVSRARVQSSIRSGLVFVNGRVTDKVSHMVKGGDKVDCTIADLKPLRA 130

Query: 627  EPEEMPLDIVYEDAHLLVIHKPAHLVVHPAPGNATGTLVNGILHHCSLPTVSYTSQDIPS 806
            EPE++PLDIVYED H+LV++KPAH+VVHPAPGNATGTLV+GILHHCSLPTVS+  +++ S
Sbjct: 131  EPEDIPLDIVYEDDHVLVVNKPAHMVVHPAPGNATGTLVSGILHHCSLPTVSFPGEEVLS 190

Query: 807  EDDDASDEELNGGVC---------SGESDASIRPGIVHRLDKGTSGLLVVAKDEHSHAHL 959
            + +DASD+ELN             S   ++S+RPGIVHRLDKGTSGLLVVAK+EHS A L
Sbjct: 191  DGEDASDDELNMFSAYRSPNYDDSSVMCESSVRPGIVHRLDKGTSGLLVVAKNEHSLADL 250

Query: 960  AEQFKSHTIKRIYISLTCGIPSPASGRIDVPIGRDSNNRLRMVAVSGSSKSGRTRHAASR 1139
            AEQFK HTIKR+Y+S+TCG+P+  +GR+D+PIGRDSNNR+RM A+ G+ KSG++RHA SR
Sbjct: 251  AEQFKKHTIKRVYVSITCGVPASVAGRVDIPIGRDSNNRIRMAAIPGTPKSGKSRHAVSR 310

Query: 1140 YRVIEILAGGGSALVEWKLETGRTHQIRAHAKYLGIPLLGDEVYGGTKGMALALLQPKTM 1319
            Y+VIE LAGG SALVEW+LETGRTHQIRAHAK+LGIPL+GDEVYGGTK MAL+LLQPKT 
Sbjct: 311  YKVIEKLAGGSSALVEWRLETGRTHQIRAHAKHLGIPLMGDEVYGGTKNMALSLLQPKTP 370

Query: 1320 PTVRGKLMEMLSKLERPCLHALTLGFQHPHTGENMNFSQLPPEDFAAVLTQLREFSKEKA 1499
            P   GKL +++S+++RPCLHALTLGF+HP TGEN++ ++LPP DFA +L++LR  + EK 
Sbjct: 371  PMFHGKLSQLVSQIDRPCLHALTLGFRHPFTGENLHITRLPPPDFAEILSELRAINTEKV 430

Query: 1500 I 1502
            +
Sbjct: 431  L 431


>XP_015073899.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1
            [Solanum pennellii]
          Length = 436

 Score =  533 bits (1374), Expect = 0.0
 Identities = 258/419 (61%), Positives = 331/419 (78%), Gaps = 9/419 (2%)
 Frame = +3

Query: 267  LPPKTPHFLESNSIPRLFSCFKTSFSTNPCPETSPKPISSNLGNFSGVTLEDAVELNAKK 446
            L P+ P  +  + +        T F  +   + SP  I     N+SGV LE+ V+    K
Sbjct: 11   LLPQNPKPISLSRVSSFICRAFTKFPGDSDSDDSPDEIPGRRSNYSGVKLEETVDSKTGK 70

Query: 447  LRVDAWICSKISGISRARVQSSIKSGLVSVNGRQIDKSSYMVRSGDKVNCTIAEMQQLKA 626
            LR+D+W+ S+I G+SRARVQSSI+SGLV VNGR  DK S+MV+ GDKV+CTIA+++ L+A
Sbjct: 71   LRLDSWVSSRIDGVSRARVQSSIRSGLVFVNGRVTDKVSHMVKGGDKVDCTIADLKPLRA 130

Query: 627  EPEEMPLDIVYEDAHLLVIHKPAHLVVHPAPGNATGTLVNGILHHCSLPTVSYTSQDIPS 806
            EPE++PLDIVYED H+LV++KPAH+VVHPAPGNATGTLV+GILHHCSLPTVS+  +++ S
Sbjct: 131  EPEDIPLDIVYEDDHVLVVNKPAHMVVHPAPGNATGTLVSGILHHCSLPTVSFPGEEVLS 190

Query: 807  EDDDASDEELNGGVC---------SGESDASIRPGIVHRLDKGTSGLLVVAKDEHSHAHL 959
            + +DASD+ELN             S   ++S+RPGIVHRLDKGTSGLLVVAK+EHS A L
Sbjct: 191  DGEDASDDELNMFSAYRSPNYDDSSVMCESSVRPGIVHRLDKGTSGLLVVAKNEHSLADL 250

Query: 960  AEQFKSHTIKRIYISLTCGIPSPASGRIDVPIGRDSNNRLRMVAVSGSSKSGRTRHAASR 1139
            AEQFK HTIKR+Y+S+TCG+P+  +GR+D+PIGRDSNNR+RM A+ G+ KSG++RHA SR
Sbjct: 251  AEQFKKHTIKRVYVSITCGVPASVAGRVDIPIGRDSNNRIRMAAIPGTPKSGKSRHAVSR 310

Query: 1140 YRVIEILAGGGSALVEWKLETGRTHQIRAHAKYLGIPLLGDEVYGGTKGMALALLQPKTM 1319
            Y+VIE LAGG SALVEW+LETGRTHQIRAHAK+LGIPL+GDEVYGGTK MAL+LLQPKT 
Sbjct: 311  YKVIEKLAGGSSALVEWRLETGRTHQIRAHAKHLGIPLMGDEVYGGTKNMALSLLQPKTP 370

Query: 1320 PTVRGKLMEMLSKLERPCLHALTLGFQHPHTGENMNFSQLPPEDFAAVLTQLREFSKEK 1496
            P   GKL +++S+++RPCLHALTLGF+HP TGEN++ ++LPP DFA +L++LR  + EK
Sbjct: 371  PMFHGKLSQLVSQIDRPCLHALTLGFRHPFTGENLHITRLPPPDFAEILSELRAINTEK 429


>XP_010241330.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X3
            [Nelumbo nucifera]
          Length = 443

 Score =  531 bits (1367), Expect = 0.0
 Identities = 271/433 (62%), Positives = 335/433 (77%), Gaps = 9/433 (2%)
 Frame = +3

Query: 234  NTMFSSLNSSILPPKTPHFLESNSIPRLFSCFKTSFSTNPCPETSPKPISSNLGNFSGVT 413
            N++++S +S  L  ++P    S    R+ +C  +S   +     S +P  +  GNF+GV 
Sbjct: 13   NSLYNS-SSFYLLHRSPRASTSRFF-RVLNCSFSSTGESASDYQSSEP-QNRRGNFAGVC 69

Query: 414  LEDAVELNAKKLRVDAWICSKISGISRARVQSSIKSGLVSVNGRQIDKSSYMVRSGDKVN 593
            LED VE+++ K R+D+WI S+I GISRARVQSSIKSGLVSVNGR IDK S+++R+GDKVN
Sbjct: 70   LEDTVEISSVKSRIDSWISSRIPGISRARVQSSIKSGLVSVNGRIIDKVSHVIRAGDKVN 129

Query: 594  CTIAEMQQLKAEPEEMPLDIVYEDAHLLVIHKPAHLVVHPAPGNATGTLVNGILHHCSLP 773
            CTI E+Q L+AEPE++PLDIVYED  +LV++KPAH+VVHPAPGNA GTLVNGILHHCSLP
Sbjct: 130  CTIKELQPLRAEPEDIPLDIVYEDESVLVVNKPAHMVVHPAPGNANGTLVNGILHHCSLP 189

Query: 774  TVSYTSQDIPSEDDDASDEELN---------GGVCSGESDASIRPGIVHRLDKGTSGLLV 926
             V+ T+  + SE DD SD+E +           V S   + S+RPGIVHRLDKGTSGLLV
Sbjct: 190  MVALTNSKVLSETDDISDDESDIFSSTQGSMEEVTSNICEVSVRPGIVHRLDKGTSGLLV 249

Query: 927  VAKDEHSHAHLAEQFKSHTIKRIYISLTCGIPSPASGRIDVPIGRDSNNRLRMVAVSGSS 1106
            VAKDEHSHAHL+EQFK HTI RIY+SLTCG+PS  SGRI+VPIGRD +NR+RM AV   +
Sbjct: 250  VAKDEHSHAHLSEQFKLHTINRIYLSLTCGVPSLNSGRIEVPIGRDLSNRIRMAAVPSPN 309

Query: 1107 KSGRTRHAASRYRVIEILAGGGSALVEWKLETGRTHQIRAHAKYLGIPLLGDEVYGGTKG 1286
             S + RHAASRYRV+E+LAGGGSALVEW+LETGRTHQIRAHAKYLGIPLLGDEVYGGT+ 
Sbjct: 310  SSRQARHAASRYRVVEVLAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTRN 369

Query: 1287 MALALLQPKTMPTVRGKLMEMLSKLERPCLHALTLGFQHPHTGENMNFSQLPPEDFAAVL 1466
            MAL+LL+ ++  +  G L +++SKL+RPCLHA TLGF+HPHTGENM FS  PP DF  VL
Sbjct: 370  MALSLLRTRSHSSFHGDLSQLVSKLQRPCLHAFTLGFKHPHTGENMQFSCPPPADFTEVL 429

Query: 1467 TQLREFSKEKAIR 1505
            +QLR    EK ++
Sbjct: 430  SQLRSIGIEKPLK 442


>XP_010241329.1 PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X2
            [Nelumbo nucifera]
          Length = 453

 Score =  530 bits (1366), Expect = 0.0
 Identities = 272/432 (62%), Positives = 334/432 (77%), Gaps = 9/432 (2%)
 Frame = +3

Query: 234  NTMFSSLNSSILPPKTPHFLESNSIPRLFSCFKTSFSTNPCPETSPKPISSNLGNFSGVT 413
            N++++S +S  L  ++P    S    R+ +C  +S   +     S +P  +  GNF+GV 
Sbjct: 13   NSLYNS-SSFYLLHRSPRASTSRFF-RVLNCSFSSTGESASDYQSSEP-QNRRGNFAGVC 69

Query: 414  LEDAVELNAKKLRVDAWICSKISGISRARVQSSIKSGLVSVNGRQIDKSSYMVRSGDKVN 593
            LED VE+++ K R+D+WI S+I GISRARVQSSIKSGLVSVNGR IDK S+++R+GDKVN
Sbjct: 70   LEDTVEISSVKSRIDSWISSRIPGISRARVQSSIKSGLVSVNGRIIDKVSHVIRAGDKVN 129

Query: 594  CTIAEMQQLKAEPEEMPLDIVYEDAHLLVIHKPAHLVVHPAPGNATGTLVNGILHHCSLP 773
            CTI E+Q L+AEPE++PLDIVYED  +LV++KPAH+VVHPAPGNA GTLVNGILHHCSLP
Sbjct: 130  CTIKELQPLRAEPEDIPLDIVYEDESVLVVNKPAHMVVHPAPGNANGTLVNGILHHCSLP 189

Query: 774  TVSYTSQDIPSEDDDASDEELN---------GGVCSGESDASIRPGIVHRLDKGTSGLLV 926
             V+ T+  + SE DD SD+E +           V S   + S+RPGIVHRLDKGTSGLLV
Sbjct: 190  MVALTNSKVLSETDDISDDESDIFSSTQGSMEEVTSNICEVSVRPGIVHRLDKGTSGLLV 249

Query: 927  VAKDEHSHAHLAEQFKSHTIKRIYISLTCGIPSPASGRIDVPIGRDSNNRLRMVAVSGSS 1106
            VAKDEHSHAHL+EQFK HTI RIY+SLTCG+PS  SGRI+VPIGRD +NR+RM AV   +
Sbjct: 250  VAKDEHSHAHLSEQFKLHTINRIYLSLTCGVPSLNSGRIEVPIGRDLSNRIRMAAVPSPN 309

Query: 1107 KSGRTRHAASRYRVIEILAGGGSALVEWKLETGRTHQIRAHAKYLGIPLLGDEVYGGTKG 1286
             S + RHAASRYRV+E+LAGGGSALVEW+LETGRTHQIRAHAKYLGIPLLGDEVYGGT+ 
Sbjct: 310  SSRQARHAASRYRVVEVLAGGGSALVEWRLETGRTHQIRAHAKYLGIPLLGDEVYGGTRN 369

Query: 1287 MALALLQPKTMPTVRGKLMEMLSKLERPCLHALTLGFQHPHTGENMNFSQLPPEDFAAVL 1466
            MAL+LL+ ++  +  G L +++SKL+RPCLHA TLGF+HPHTGENM FS  PP DF  VL
Sbjct: 370  MALSLLRTRSHSSFHGDLSQLVSKLQRPCLHAFTLGFKHPHTGENMQFSCPPPADFTEVL 429

Query: 1467 TQLREFSKEKAI 1502
            +QLR    EK I
Sbjct: 430  SQLRSIGIEKNI 441