BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum23_contig00013644
         (2335 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

XP_011086680.1 PREDICTED: RNA polymerase sigma factor sigB isofo...   678   0.0  
XP_010052665.1 PREDICTED: RNA polymerase sigma factor sigB isofo...   663   0.0  
XP_017977747.1 PREDICTED: RNA polymerase sigma factor sigB isofo...   662   0.0  
CDP07629.1 unnamed protein product [Coffea canephora]                 657   0.0  
XP_017977746.1 PREDICTED: RNA polymerase sigma factor sigB isofo...   655   0.0  
XP_010661180.1 PREDICTED: RNA polymerase sigma factor sigB [Viti...   647   0.0  
XP_009761599.1 PREDICTED: RNA polymerase sigma factor sigB-like ...   645   0.0  
XP_015895073.1 PREDICTED: RNA polymerase sigma factor sigB [Zizi...   642   0.0  
OMP03365.1 RNA polymerase sigma-70 [Corchorus capsularis]             642   0.0  
XP_010097670.1 RNA polymerase sigma factor rpoD [Morus notabilis...   641   0.0  
KDO49412.1 hypothetical protein CISIN_1g007404mg [Citrus sinensis]    640   0.0  
XP_006484754.1 PREDICTED: RNA polymerase sigma factor sigB isofo...   639   0.0  
XP_019224549.1 PREDICTED: RNA polymerase sigma factor sigB-like ...   640   0.0  
XP_009599122.1 PREDICTED: RNA polymerase sigma factor sigB-like ...   639   0.0  
XP_010052664.1 PREDICTED: RNA polymerase sigma factor sigB isofo...   637   0.0  
EOY10370.1 RNApolymerase sigma subunit 2 [Theobroma cacao]            637   0.0  
XP_012434812.1 PREDICTED: RNA polymerase sigma factor sigB [Goss...   635   0.0  
XP_017627350.1 PREDICTED: RNA polymerase sigma factor sigB [Goss...   635   0.0  
XP_010251515.1 PREDICTED: RNA polymerase sigma factor sigB-like ...   635   0.0  
XP_006437338.1 hypothetical protein CICLE_v10030998mg [Citrus cl...   635   0.0  

>XP_011086680.1 PREDICTED: RNA polymerase sigma factor sigB isoform X1 [Sesamum
            indicum]
          Length = 613

 Score =  678 bits (1749), Expect = 0.0
 Identities = 380/622 (61%), Positives = 433/622 (69%), Gaps = 13/622 (2%)
 Frame = -3

Query: 2195 MSCLLPQFNCFPDTFSVNFKSPQ---LHHSKCKDTIYLQTQCVLXXXXXXXXXXXT-VXX 2028
            MSCLLPQF C PDTF+VNFKS     ++ SK ++    +TQC+L           T V  
Sbjct: 1    MSCLLPQFKCSPDTFAVNFKSQSHTSVYSSKSREATSFRTQCILSTTPPPTLTATTTVLD 60

Query: 2027 XXXXXXXXXDANANPLSREQSWKLPISETATTALDLEQLRIPSLETHSSSESVNKQWMYT 1848
                     +A  N +  ++SW  P S   T  LDLE L  PSL+ H  + + NK W Y 
Sbjct: 61   FEKLQLSSLEAIPNQVPADRSWSTPTSSAKTAMLDLEGL--PSLDAHPITTAANKPWTYV 118

Query: 1847 EIIGQPVEARLGAPLTKETLYTSXXXXXXXXXXXXXXXXXXXXXXXXXXALMVNF----- 1683
              I  P E  LGA L  ETL TS                          A+MV+      
Sbjct: 119  GAIAPPSEVTLGANLDTETLLTSEEAVIAAAASEALALAKAAVKVAKDAAMMVSHHKPTK 178

Query: 1682 SNS----IIADTNPAATPYSKNYVSESSSLGQLADVGRLRELKSSEVSLGESHASHHPLS 1515
            SNS    + AD N   TP     + E + L  LA+   +R+ K +EV LGE++ + H L+
Sbjct: 179  SNSSATGMFADVN---TP-----IFEKNQLAHLAERVDIRDAKVAEVGLGENYPAAHSLT 230

Query: 1514 DSGDIXXXXXXXXXXXXXXEKSIAVRSSRQXXXXXXXXXXXXXXXANVVXXXXXXXXXXX 1335
            +S D+               KSIAVRS RQ               AN+V           
Sbjct: 231  ESDDVEPSAEELEFLEAQLSKSIAVRSKRQTERRARRTRAAEKAAANIVSVKSGSSSRKK 290

Query: 1334 XXSVQEVDYSDPLRYLRGTTSSSRLLTAAEEQQLSEGIQDLLKLERLQDELTQRCGTQPT 1155
              +VQ+VDYSDPLRYLRGTTSSSRLLTA+EEQ LS GIQ LLKLERLQ ELTQR G QPT
Sbjct: 291  RSAVQDVDYSDPLRYLRGTTSSSRLLTASEEQVLSSGIQVLLKLERLQMELTQRYGGQPT 350

Query: 1154 FTQWAAAAGVDQKTLRQRLNYGILCKDKMIKSNVRLVISIAKNYQGSGMNLQDLVQEGCR 975
            F QWAAAAGVDQKTLR+++NYGILCKDKMIKSN+RLVISIAKNYQG+GMNLQDLVQEGCR
Sbjct: 351  FAQWAAAAGVDQKTLRKQINYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCR 410

Query: 974  GLVRGAEKFDASKGFKFSTYAHWWIRQSVRKSLSDQSRTIRLPFHMVEATYRVKEARKHL 795
            GLVRGAEKFDA+KGFKFSTYAHWWI+Q+VRKSLSDQSRTIRLPFHMVEATYRVKEARK L
Sbjct: 411  GLVRGAEKFDATKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQL 470

Query: 794  FTENGRHPDDDEVAEATGLSMKRLSAVMLTPKAPRSLDQKIGINQNLKPSEVISDPDAET 615
            ++ENGRHPDD+EVAEATGLSMKRLSAVMLTPKAPRSLDQKIGINQ+LKPS+VI+DP+AET
Sbjct: 471  YSENGRHPDDEEVAEATGLSMKRLSAVMLTPKAPRSLDQKIGINQDLKPSDVIADPEAET 530

Query: 614  SEDILTKQFMRDDLDKVLDSLKPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQI 435
            +ED+L KQFM+ DL KVLDSL PREKQVV WRFGLEDGRMKTLQEIGELMGVSRERIRQI
Sbjct: 531  AEDLLIKQFMKQDLAKVLDSLNPREKQVVIWRFGLEDGRMKTLQEIGELMGVSRERIRQI 590

Query: 434  ESCAFRKLKNKKRTKHLQQYIL 369
            ESCAFRKLKNKKRTKHLQQY++
Sbjct: 591  ESCAFRKLKNKKRTKHLQQYVM 612


>XP_010052665.1 PREDICTED: RNA polymerase sigma factor sigB isoform X2 [Eucalyptus
            grandis] KCW76739.1 hypothetical protein EUGRSUZ_D01094
            [Eucalyptus grandis]
          Length = 588

 Score =  663 bits (1710), Expect = 0.0
 Identities = 364/613 (59%), Positives = 416/613 (67%)
 Frame = -3

Query: 2204 KEIMSCLLPQFNCFPDTFSVNFKSPQLHHSKCKDTIYLQTQCVLXXXXXXXXXXXTVXXX 2025
            + + SCLLPQF C PDTFS+ F++   H  K ++T Y + QC+L                
Sbjct: 11   QRMSSCLLPQFKCQPDTFSIQFRT---HAQKNRETTYFRAQCLLSA-------------- 53

Query: 2024 XXXXXXXXDANANPLSREQSWKLPISETATTALDLEQLRIPSLETHSSSESVNKQWMYTE 1845
                      + + LS         S      LD+E+LR+PSLE  + S + N+ W YT 
Sbjct: 54   ---------TSPSTLS---------SAATAVVLDMEKLRLPSLEVLTDSPTSNRPWTYTG 95

Query: 1844 IIGQPVEARLGAPLTKETLYTSXXXXXXXXXXXXXXXXXXXXXXXXXXALMVNFSNSIIA 1665
             +G P E  LGA L  ETL TS                          ALM+   +S   
Sbjct: 96   AVGPPAEVNLGATLATETLLTSDEAVIAAAASEAVTLAKAALKSAKHAALMIRNESSSNI 155

Query: 1664 DTNPAATPYSKNYVSESSSLGQLADVGRLRELKSSEVSLGESHASHHPLSDSGDIXXXXX 1485
            D     +  +   +S+ + L +L     L EL   E  L E +   +    S D+     
Sbjct: 156  DNKLELSSRTSTSLSKHAELLELEHSNILTELMEPEGGLREGNVMQYSTDKSEDLEPTHE 215

Query: 1484 XXXXXXXXXEKSIAVRSSRQXXXXXXXXXXXXXXXANVVXXXXXXXXXXXXXSVQEVDYS 1305
                      KSIAVRS RQ               ANVV             ++QEVDYS
Sbjct: 216  ELQLLQVQLFKSIAVRSRRQTERKEIRERAAEKAAANVVSVKSGSLSKKKRAALQEVDYS 275

Query: 1304 DPLRYLRGTTSSSRLLTAAEEQQLSEGIQDLLKLERLQDELTQRCGTQPTFTQWAAAAGV 1125
            DPLRYLRGTTSSSRLLTA EE +LSEGIQDLLKLERLQ ELT+RCG +P F QWAAAAGV
Sbjct: 276  DPLRYLRGTTSSSRLLTATEETELSEGIQDLLKLERLQVELTERCGGEPAFAQWAAAAGV 335

Query: 1124 DQKTLRQRLNYGILCKDKMIKSNVRLVISIAKNYQGSGMNLQDLVQEGCRGLVRGAEKFD 945
            DQKTLR+RLNYG LCKDKMIKSN+RLVISIAKNYQG+GMNLQDLVQEGCRGLVRG EKFD
Sbjct: 336  DQKTLRKRLNYGRLCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGCEKFD 395

Query: 944  ASKGFKFSTYAHWWIRQSVRKSLSDQSRTIRLPFHMVEATYRVKEARKHLFTENGRHPDD 765
            ASKGFKFSTYAHWWI+Q+VRKSLSDQSRTIRLPFHMVEATYRVKEARK L++ENGR PD+
Sbjct: 396  ASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRQPDN 455

Query: 764  DEVAEATGLSMKRLSAVMLTPKAPRSLDQKIGINQNLKPSEVISDPDAETSEDILTKQFM 585
            +EVAEATGLSMKRL+AV++TPKAPRSLDQKIGINQNLKPSEVI+DP+AETSED+L KQFM
Sbjct: 456  EEVAEATGLSMKRLNAVLMTPKAPRSLDQKIGINQNLKPSEVIADPNAETSEDVLLKQFM 515

Query: 584  RDDLDKVLDSLKPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKN 405
            R DL+KVLD+L PREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKN
Sbjct: 516  RQDLEKVLDTLNPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKN 575

Query: 404  KKRTKHLQQYILA 366
            KKRTKHLQQY+LA
Sbjct: 576  KKRTKHLQQYVLA 588


>XP_017977747.1 PREDICTED: RNA polymerase sigma factor sigB isoform X2 [Theobroma
            cacao]
          Length = 579

 Score =  662 bits (1707), Expect = 0.0
 Identities = 356/610 (58%), Positives = 417/610 (68%)
 Frame = -3

Query: 2195 MSCLLPQFNCFPDTFSVNFKSPQLHHSKCKDTIYLQTQCVLXXXXXXXXXXXTVXXXXXX 2016
            MSCLLPQF C PDTFS+ F++   HHSK K+ I  +TQCVL                   
Sbjct: 1    MSCLLPQFKCQPDTFSIQFRTHHSHHSKHKEHICFRTQCVL------------------- 41

Query: 2015 XXXXXDANANPLSREQSWKLPISETATTALDLEQLRIPSLETHSSSESVNKQWMYTEIIG 1836
                            +     S TAT  LD+E+LR+PS E H +S +V++ W Y    G
Sbjct: 42   ---------------STTSSSTSTTATAVLDVEKLRLPSFEAHPNSVAVDRPWTYIGATG 86

Query: 1835 QPVEARLGAPLTKETLYTSXXXXXXXXXXXXXXXXXXXXXXXXXXALMVNFSNSIIADTN 1656
             P EA LGA L  + L TS                          ALM    N    +  
Sbjct: 87   PPSEASLGATLATDNLLTSDEAIIAAAAAEAVALARAAVKVAKDAALMAENYNYAKTEMK 146

Query: 1655 PAATPYSKNYVSESSSLGQLADVGRLRELKSSEVSLGESHASHHPLSDSGDIXXXXXXXX 1476
               +  + ++ S+ +   +    G + +  + E  + E  +  +  ++S ++        
Sbjct: 147  SGVSFATDSFTSKWALFTEAERAGIIGDSPTDESEMEEDDSEQNSTTESDELEPTNEELE 206

Query: 1475 XXXXXXEKSIAVRSSRQXXXXXXXXXXXXXXXANVVXXXXXXXXXXXXXSVQEVDYSDPL 1296
                   +SIAVRS RQ               ANVV             ++Q+VDYSDPL
Sbjct: 207  RLEEQLSRSIAVRSRRQTERKAKRTRAAEKAAANVVSVKSGSTNRKRRGALQDVDYSDPL 266

Query: 1295 RYLRGTTSSSRLLTAAEEQQLSEGIQDLLKLERLQDELTQRCGTQPTFTQWAAAAGVDQK 1116
            RYLRGTTS+SRLLTA EE +LSEGIQDLLKLERLQ+EL +RCG QPTF QWAAAAGVDQK
Sbjct: 267  RYLRGTTSTSRLLTANEELELSEGIQDLLKLERLQEELAERCGGQPTFAQWAAAAGVDQK 326

Query: 1115 TLRQRLNYGILCKDKMIKSNVRLVISIAKNYQGSGMNLQDLVQEGCRGLVRGAEKFDASK 936
            TLR RLNYG+ CKDKMIKSN+RLVISIAKNYQG+GMNLQDLVQEGCRGLVRGAEKFDASK
Sbjct: 327  TLRSRLNYGVHCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASK 386

Query: 935  GFKFSTYAHWWIRQSVRKSLSDQSRTIRLPFHMVEATYRVKEARKHLFTENGRHPDDDEV 756
            GFKFSTYAHWWI+Q+VRKSLSDQSRTIRLPFHMVEATYRVKEARK L++ENGRHPD++EV
Sbjct: 387  GFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDNEEV 446

Query: 755  AEATGLSMKRLSAVMLTPKAPRSLDQKIGINQNLKPSEVISDPDAETSEDILTKQFMRDD 576
            AEATGLSMKRL+AV+LTPKAPRSLDQKIGINQNLKPSEVI+DP+AET+ED+L KQFMR D
Sbjct: 447  AEATGLSMKRLTAVLLTPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDMLIKQFMRKD 506

Query: 575  LDKVLDSLKPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKR 396
            L+KVLDSL  RE+QV+RWRFG+EDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKR
Sbjct: 507  LEKVLDSLSQRERQVIRWRFGMEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKR 566

Query: 395  TKHLQQYILA 366
            TKHLQQY+L+
Sbjct: 567  TKHLQQYLLS 576


>CDP07629.1 unnamed protein product [Coffea canephora]
          Length = 615

 Score =  657 bits (1695), Expect = 0.0
 Identities = 359/618 (58%), Positives = 429/618 (69%), Gaps = 8/618 (1%)
 Frame = -3

Query: 2195 MSCLLPQFNCFPDTFSVNFKS-----PQLHHSKCKDTIYLQTQCVLXXXXXXXXXXXTVX 2031
            MSCLLPQF C PD F V FKS     PQL  SK +D I+++TQC+L           TV 
Sbjct: 1    MSCLLPQFRCLPDAFGVAFKSHQHSAPQL--SKNRDPIHVRTQCILSTTSAPTSAASTVL 58

Query: 2030 XXXXXXXXXXDANANPLSREQSWKLPISETATTALDLEQLRIPSLETHSSSESVNKQWMY 1851
                      +AN+N +S + SWK P S      L +E+L++ SLE HS S + N+ W Y
Sbjct: 59   DIEKLRLLSLEANSNSVS-DGSWKAPKSPAMAAVLVMEKLKLISLEAHSDSVTANRPWTY 117

Query: 1850 TEIIGQPVEARLGAPLTKETLYTSXXXXXXXXXXXXXXXXXXXXXXXXXXALMVNFSNSI 1671
               +   ++  LGA L  E+L  +                          A+MV+  N  
Sbjct: 118  NGPVDSAIKPNLGATLATESLIANEEAVIAAAAAEAVALAKAALKVAKDAAMMVDHGNLT 177

Query: 1670 IADTNPAAT-PYSKNYVSESSSLGQLAD-VGRLRELKSSEVSLGESHASHHPLSDSGDIX 1497
              ++    T   S + +S  + LGQL   V  + E+  + V LGE+H+  +P ++S D+ 
Sbjct: 178  EPESKAMDTLSESSDVLSNRALLGQLEKRVSTIGEINIAGVELGENHSIWYPFTESDDME 237

Query: 1496 XXXXXXXXXXXXXEKSIAVRSSRQXXXXXXXXXXXXXXXANVVXXXXXXXXXXXXXS-VQ 1320
                           ++AVRS RQ               A+ V             S +Q
Sbjct: 238  PTNEELELLQEQLLNNVAVRSKRQKERKARRARAAERAAASAVSVKSSGSTSRKKRSSIQ 297

Query: 1319 EVDYSDPLRYLRGTTSSSRLLTAAEEQQLSEGIQDLLKLERLQDELTQRCGTQPTFTQWA 1140
            E+DYSDPLRYLRGT ++SRLLTA+EEQ+LSEGIQDLLKLE L +EL QRCG +PTF QWA
Sbjct: 298  EIDYSDPLRYLRGTATTSRLLTASEEQELSEGIQDLLKLETLHEELAQRCGAEPTFAQWA 357

Query: 1139 AAAGVDQKTLRQRLNYGILCKDKMIKSNVRLVISIAKNYQGSGMNLQDLVQEGCRGLVRG 960
            AAAGVDQKTLR+RLNYG L KDKMI SN+RLVISIA+NYQG+GMNLQDLVQEGCRGLVRG
Sbjct: 358  AAAGVDQKTLRKRLNYGTLSKDKMIMSNIRLVISIARNYQGAGMNLQDLVQEGCRGLVRG 417

Query: 959  AEKFDASKGFKFSTYAHWWIRQSVRKSLSDQSRTIRLPFHMVEATYRVKEARKHLFTENG 780
            AEKFDA KGFKFSTYAHWWI+Q+VRKSLSDQSRTIRLPFHMVEATYRVKEA+K L++ENG
Sbjct: 418  AEKFDAKKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEAKKQLYSENG 477

Query: 779  RHPDDDEVAEATGLSMKRLSAVMLTPKAPRSLDQKIGINQNLKPSEVISDPDAETSEDIL 600
            RHPDD+EVAEA GLSMKRLSAVMLTPKAP+SLDQKIGINQNLKPSEVI+DP+AETSED+L
Sbjct: 478  RHPDDEEVAEAAGLSMKRLSAVMLTPKAPKSLDQKIGINQNLKPSEVIADPEAETSEDLL 537

Query: 599  TKQFMRDDLDKVLDSLKPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAF 420
             K+FMR DL+KVL++L PRE+QV+RWRFGL DGRMKTLQEIGELMGVSRERIRQIESCAF
Sbjct: 538  VKRFMRQDLEKVLNTLNPRERQVIRWRFGLGDGRMKTLQEIGELMGVSRERIRQIESCAF 597

Query: 419  RKLKNKKRTKHLQQYILA 366
            RKLKNK+RTKHLQQY+L+
Sbjct: 598  RKLKNKRRTKHLQQYLLS 615


>XP_017977746.1 PREDICTED: RNA polymerase sigma factor sigB isoform X1 [Theobroma
            cacao]
          Length = 586

 Score =  655 bits (1689), Expect = 0.0
 Identities = 356/617 (57%), Positives = 417/617 (67%), Gaps = 7/617 (1%)
 Frame = -3

Query: 2195 MSCLLPQFNCFPDTFSVNFKSPQLHHSKCKDTIYLQTQCVLXXXXXXXXXXXTVXXXXXX 2016
            MSCLLPQF C PDTFS+ F++   HHSK K+ I  +TQCVL                   
Sbjct: 1    MSCLLPQFKCQPDTFSIQFRTHHSHHSKHKEHICFRTQCVL------------------- 41

Query: 2015 XXXXXDANANPLSREQSWKLPISETATTALDLEQLRIPSLETHSSSESVNKQWMYTEIIG 1836
                            +     S TAT  LD+E+LR+PS E H +S +V++ W Y    G
Sbjct: 42   ---------------STTSSSTSTTATAVLDVEKLRLPSFEAHPNSVAVDRPWTYIGATG 86

Query: 1835 QPVE-------ARLGAPLTKETLYTSXXXXXXXXXXXXXXXXXXXXXXXXXXALMVNFSN 1677
             P E       A LGA L  + L TS                          ALM    N
Sbjct: 87   PPSEVSLLRLRASLGATLATDNLLTSDEAIIAAAAAEAVALARAAVKVAKDAALMAENYN 146

Query: 1676 SIIADTNPAATPYSKNYVSESSSLGQLADVGRLRELKSSEVSLGESHASHHPLSDSGDIX 1497
                +     +  + ++ S+ +   +    G + +  + E  + E  +  +  ++S ++ 
Sbjct: 147  YAKTEMKSGVSFATDSFTSKWALFTEAERAGIIGDSPTDESEMEEDDSEQNSTTESDELE 206

Query: 1496 XXXXXXXXXXXXXEKSIAVRSSRQXXXXXXXXXXXXXXXANVVXXXXXXXXXXXXXSVQE 1317
                          +SIAVRS RQ               ANVV             ++Q+
Sbjct: 207  PTNEELERLEEQLSRSIAVRSRRQTERKAKRTRAAEKAAANVVSVKSGSTNRKRRGALQD 266

Query: 1316 VDYSDPLRYLRGTTSSSRLLTAAEEQQLSEGIQDLLKLERLQDELTQRCGTQPTFTQWAA 1137
            VDYSDPLRYLRGTTS+SRLLTA EE +LSEGIQDLLKLERLQ+EL +RCG QPTF QWAA
Sbjct: 267  VDYSDPLRYLRGTTSTSRLLTANEELELSEGIQDLLKLERLQEELAERCGGQPTFAQWAA 326

Query: 1136 AAGVDQKTLRQRLNYGILCKDKMIKSNVRLVISIAKNYQGSGMNLQDLVQEGCRGLVRGA 957
            AAGVDQKTLR RLNYG+ CKDKMIKSN+RLVISIAKNYQG+GMNLQDLVQEGCRGLVRGA
Sbjct: 327  AAGVDQKTLRSRLNYGVHCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 386

Query: 956  EKFDASKGFKFSTYAHWWIRQSVRKSLSDQSRTIRLPFHMVEATYRVKEARKHLFTENGR 777
            EKFDASKGFKFSTYAHWWI+Q+VRKSLSDQSRTIRLPFHMVEATYRVKEARK L++ENGR
Sbjct: 387  EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR 446

Query: 776  HPDDDEVAEATGLSMKRLSAVMLTPKAPRSLDQKIGINQNLKPSEVISDPDAETSEDILT 597
            HPD++EVAEATGLSMKRL+AV+LTPKAPRSLDQKIGINQNLKPSEVI+DP+AET+ED+L 
Sbjct: 447  HPDNEEVAEATGLSMKRLTAVLLTPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDMLI 506

Query: 596  KQFMRDDLDKVLDSLKPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFR 417
            KQFMR DL+KVLDSL  RE+QV+RWRFG+EDGRMKTLQEIGELMGVSRERIRQIESCAFR
Sbjct: 507  KQFMRKDLEKVLDSLSQRERQVIRWRFGMEDGRMKTLQEIGELMGVSRERIRQIESCAFR 566

Query: 416  KLKNKKRTKHLQQYILA 366
            KLKNKKRTKHLQQY+L+
Sbjct: 567  KLKNKKRTKHLQQYLLS 583


>XP_010661180.1 PREDICTED: RNA polymerase sigma factor sigB [Vitis vinifera]
            CBI40014.3 unnamed protein product, partial [Vitis
            vinifera]
          Length = 575

 Score =  647 bits (1670), Expect = 0.0
 Identities = 356/619 (57%), Positives = 428/619 (69%), Gaps = 9/619 (1%)
 Frame = -3

Query: 2195 MSCLLPQFNCFPDTFSVNFKSPQLH-HSKCKDTIYLQTQCVLXXXXXXXXXXXTVXXXXX 2019
            MSCLLPQF C PDTFS +   P+LH  SK ++ IY + QC L                  
Sbjct: 1    MSCLLPQFKCPPDTFSTH---PKLHILSKNREAIYFRVQCAL------------------ 39

Query: 2018 XXXXXXDANANPLSREQSWKLPISETATTALDLEQLRIPSLETHSSSESVNKQWMYTEII 1839
                   +  +P         P+S + T  LD+E+LR+PSLE+HS+S + ++ W Y  ++
Sbjct: 40   -------STTSP---------PLSTSTTAVLDIEKLRLPSLESHSNSVAAHRPWTYIGVV 83

Query: 1838 GQPVEARLGAPLTKETLYTSXXXXXXXXXXXXXXXXXXXXXXXXXXALMVNFSNSIIADT 1659
            G P EA   A L +ETL TS                          A +V  +NS  ++T
Sbjct: 84   GPPTEANFEATLARETLLTSEEAVIAAAAAEAVALAKAAVKVAKDAARLVGKNNSAKSET 143

Query: 1658 NPAA-------TPYSKNYVSESSSLGQLAD-VGRLRELKSSEVSLGESHASHHPLSDSGD 1503
             PA+       + + +   +E+  +G L D VG       +E  + + ++      DS D
Sbjct: 144  KPASFLSGDDTSQFRRIQFTETERIGILGDSVG-------AETGMVDYNSLQDVTEDSDD 196

Query: 1502 IXXXXXXXXXXXXXXEKSIAVRSSRQXXXXXXXXXXXXXXXANVVXXXXXXXXXXXXXSV 1323
            +               KSI VRS+RQ               A VV             S+
Sbjct: 197  LEPTLEELELLEAEFSKSIVVRSNRQVERKARRARAAEKASAGVVSVRSGSTSRRKRVSL 256

Query: 1322 QEVDYSDPLRYLRGTTSSSRLLTAAEEQQLSEGIQDLLKLERLQDELTQRCGTQPTFTQW 1143
            QEVDYSDPLRYLRGTTS+SRLLTA EE +LSEGIQDLLKLE+LQ++L +R G +PTF QW
Sbjct: 257  QEVDYSDPLRYLRGTTSTSRLLTATEELELSEGIQDLLKLEKLQEDLEERFGVKPTFAQW 316

Query: 1142 AAAAGVDQKTLRQRLNYGILCKDKMIKSNVRLVISIAKNYQGSGMNLQDLVQEGCRGLVR 963
            AAAAGVDQKTLR+R NYGI CKDKMIKSN+RLVISIAKNYQG+GMN+QDLVQEGCRGLVR
Sbjct: 317  AAAAGVDQKTLRRRTNYGIRCKDKMIKSNIRLVISIAKNYQGAGMNIQDLVQEGCRGLVR 376

Query: 962  GAEKFDASKGFKFSTYAHWWIRQSVRKSLSDQSRTIRLPFHMVEATYRVKEARKHLFTEN 783
            GAEKFDASKGFKFSTYAHWWI+Q+VRKSLSDQSRTIRLPFHMVEATYRVKEARK L++EN
Sbjct: 377  GAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSEN 436

Query: 782  GRHPDDDEVAEATGLSMKRLSAVMLTPKAPRSLDQKIGINQNLKPSEVISDPDAETSEDI 603
            GRHP+++EVAEATGLSMKRL+AV+LTPKAPRSLDQKIGINQNLKPSEVI+DPDAET+E++
Sbjct: 437  GRHPNNEEVAEATGLSMKRLNAVLLTPKAPRSLDQKIGINQNLKPSEVIADPDAETAEEL 496

Query: 602  LTKQFMRDDLDKVLDSLKPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCA 423
            L KQFMR+DL+KVL+SL PREKQV+RWR+GLEDGR KTLQEIGELMGVSRERIRQIESCA
Sbjct: 497  LIKQFMREDLEKVLNSLNPREKQVIRWRYGLEDGRTKTLQEIGELMGVSRERIRQIESCA 556

Query: 422  FRKLKNKKRTKHLQQYILA 366
            FRKLKNK+RTKHLQQY+++
Sbjct: 557  FRKLKNKRRTKHLQQYLVS 575


>XP_009761599.1 PREDICTED: RNA polymerase sigma factor sigB-like [Nicotiana
            sylvestris] XP_016439073.1 PREDICTED: RNA polymerase
            sigma factor sigB-like [Nicotiana tabacum]
          Length = 629

 Score =  645 bits (1663), Expect = 0.0
 Identities = 366/623 (58%), Positives = 426/623 (68%), Gaps = 9/623 (1%)
 Frame = -3

Query: 2207 KKEIMSCLLPQFNCFPDTFSVNFKSPQ---LHHSKCKDTIYLQTQCVLXXXXXXXXXXXT 2037
            ++  MS LLPQF   PDTF + FK+ Q   +  SK +D I+L+TQC+L           +
Sbjct: 9    ERNSMSYLLPQFKSLPDTFVLCFKTNQNSTIQLSKGRDHIHLRTQCILATTSAATSTATS 68

Query: 2036 -VXXXXXXXXXXXDANANPLSREQSWKLPISETATTA-LDLEQLRIPSLETHSSSESVNK 1863
             V           +  ++ ++ E+SWK P   TAT+A LD+ +L++ S E +  S + ++
Sbjct: 69   TVLDIEKLKLPSIEILSSSVAAERSWKPP--STATSAVLDIPRLKLLSFEANPDSVAPDR 126

Query: 1862 QWMYTEIIGQPVEARLGAPLTKETLYTSXXXXXXXXXXXXXXXXXXXXXXXXXXALMVNF 1683
             W YT  +G P EA   + L  E L TS                           L+V  
Sbjct: 127  PWTYTGAVGPPTEANTKSALATENLVTSDEAVVAAAAAEAVALAKAALKFAKDAVLLVGH 186

Query: 1682 SNSIIADTNPAAT-PYSKNYVSESSSLGQLADVGRLR---ELKSSEVSLGESHASHHPLS 1515
            +N   +D     T   ++    ES  L Q ++ GR+R   E K SE+   ES      L+
Sbjct: 187  NNLKNSDDAGRGTLSEARTTPFESVPLAQPSETGRVRVGAEFKGSEMKWSESSLFEDSLT 246

Query: 1514 DSGDIXXXXXXXXXXXXXXEKSIAVRSSRQXXXXXXXXXXXXXXXANVVXXXXXXXXXXX 1335
            DS D+                 IAV+S+RQ               ANVV           
Sbjct: 247  DSDDLEPSPEELEILQSQLSNVIAVKSTRQTERKARRGRAAERAAANVVSVKSGSTSRKK 306

Query: 1334 XXSVQEVDYSDPLRYLRGTTSSSRLLTAAEEQQLSEGIQDLLKLERLQDELTQRCGTQPT 1155
              SVQEVDYSDPLRYLRGTT SSRLLTA+EEQ+LS GIQDLLKLERL+ EL  RCG QPT
Sbjct: 307  RTSVQEVDYSDPLRYLRGTTGSSRLLTASEEQELSRGIQDLLKLERLEQELAARCGGQPT 366

Query: 1154 FTQWAAAAGVDQKTLRQRLNYGILCKDKMIKSNVRLVISIAKNYQGSGMNLQDLVQEGCR 975
              QWAAAAGV+QKTLR+RLNYGILCKDKMIKSN+RLVISIAKNYQG GMNLQDLVQEGCR
Sbjct: 367  IAQWAAAAGVEQKTLRKRLNYGILCKDKMIKSNIRLVISIAKNYQGVGMNLQDLVQEGCR 426

Query: 974  GLVRGAEKFDASKGFKFSTYAHWWIRQSVRKSLSDQSRTIRLPFHMVEATYRVKEARKHL 795
            GLVRGAEKFDA+KGFKFSTYAHWWI+Q+VRKSLSDQSRTIRLPFHMVEATYRVKEARK L
Sbjct: 427  GLVRGAEKFDAAKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQL 486

Query: 794  FTENGRHPDDDEVAEATGLSMKRLSAVMLTPKAPRSLDQKIGINQNLKPSEVISDPDAET 615
            FTENGR P+D+EVAEATGLSMKRL+AVMLTPKAPRSLDQKIG NQ+LKPSEVI+DP+AET
Sbjct: 487  FTENGRLPNDEEVAEATGLSMKRLTAVMLTPKAPRSLDQKIGFNQSLKPSEVIADPEAET 546

Query: 614  SEDILTKQFMRDDLDKVLDSLKPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQI 435
            SE++L KQFMR DL+KVLD+L PREKQVV+WRFGL DGRMKTLQEIGELMGVSRERIRQI
Sbjct: 547  SEEMLMKQFMRQDLEKVLDTLNPREKQVVKWRFGLADGRMKTLQEIGELMGVSRERIRQI 606

Query: 434  ESCAFRKLKNKKRTKHLQQYILA 366
            ESCAFRKLKNKKRTK LQQYI A
Sbjct: 607  ESCAFRKLKNKKRTKFLQQYITA 629


>XP_015895073.1 PREDICTED: RNA polymerase sigma factor sigB [Ziziphus jujuba]
          Length = 573

 Score =  642 bits (1657), Expect = 0.0
 Identities = 348/610 (57%), Positives = 418/610 (68%)
 Frame = -3

Query: 2195 MSCLLPQFNCFPDTFSVNFKSPQLHHSKCKDTIYLQTQCVLXXXXXXXXXXXTVXXXXXX 2016
            MSCLLPQF C PDTFS++F++   H  K +D+I     C+L                   
Sbjct: 1    MSCLLPQFKCQPDTFSIHFRT---HLPKPRDSISSWPHCIL------------------- 38

Query: 2015 XXXXXDANANPLSREQSWKLPISETATTALDLEQLRIPSLETHSSSESVNKQWMYTEIIG 1836
                  + ++P +         S   TT L+LE+LR+PSL+ +S S + N+ W YT  IG
Sbjct: 39   ------STSSPST---------SMATTTVLNLEKLRLPSLDANSDSVTANRPWTYTGAIG 83

Query: 1835 QPVEARLGAPLTKETLYTSXXXXXXXXXXXXXXXXXXXXXXXXXXALMVNFSNSIIADTN 1656
             P +A L A L  ETL TS                           L++N +    A++ 
Sbjct: 84   PPAKANLEATLATETLLTSEEAVIAAAAAEAVTLAKAAVKVAKDATLLINNNPCTRAEST 143

Query: 1655 PAATPYSKNYVSESSSLGQLADVGRLRELKSSEVSLGESHASHHPLSDSGDIXXXXXXXX 1476
               +P       +     +     RL +    + +  + ++    + ++ D+        
Sbjct: 144  SLFSPEDDALHLKWPQHMKTGQPVRLGDSMGPKTAQLDDYSMQCAIKEADDLEPTHEELE 203

Query: 1475 XXXXXXEKSIAVRSSRQXXXXXXXXXXXXXXXANVVXXXXXXXXXXXXXSVQEVDYSDPL 1296
                     IAVRS RQ               A VV             S+Q++D+SDPL
Sbjct: 204  LLQSQLSNGIAVRSRRQTERKARRTRAAEKAAATVVSVKSGSTVRKKRASLQDIDHSDPL 263

Query: 1295 RYLRGTTSSSRLLTAAEEQQLSEGIQDLLKLERLQDELTQRCGTQPTFTQWAAAAGVDQK 1116
            RYLR TTS+SRLLTA EE +LSEGIQDLLKLE+LQ+ELT+RCG+QPTF QWAAAAGVDQK
Sbjct: 264  RYLRATTSTSRLLTATEEIELSEGIQDLLKLEKLQEELTERCGSQPTFAQWAAAAGVDQK 323

Query: 1115 TLRQRLNYGILCKDKMIKSNVRLVISIAKNYQGSGMNLQDLVQEGCRGLVRGAEKFDASK 936
            TLR+R+NYGILCKDKMIKSN+RLVISIAKNYQG+GMNLQDLVQEGCRGLVRGAEKFDASK
Sbjct: 324  TLRRRINYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDASK 383

Query: 935  GFKFSTYAHWWIRQSVRKSLSDQSRTIRLPFHMVEATYRVKEARKHLFTENGRHPDDDEV 756
            GFKFSTYAHWWI+Q+VRKSLSDQSRTIRLPFHMVEATYRVKEARK L+++NGRHPDD+EV
Sbjct: 384  GFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSKNGRHPDDEEV 443

Query: 755  AEATGLSMKRLSAVMLTPKAPRSLDQKIGINQNLKPSEVISDPDAETSEDILTKQFMRDD 576
            AEATGLSMKRL+AV+LTPKAPRSL+QKIGINQNLKPSEVI+DPDAETSED+L ++FM+ D
Sbjct: 444  AEATGLSMKRLAAVLLTPKAPRSLEQKIGINQNLKPSEVIADPDAETSEDVLIRKFMKQD 503

Query: 575  LDKVLDSLKPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKR 396
            LDKVLDSL PREKQV+RWRFG+EDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKR
Sbjct: 504  LDKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKR 563

Query: 395  TKHLQQYILA 366
            TKHLQQY+++
Sbjct: 564  TKHLQQYLVS 573


>OMP03365.1 RNA polymerase sigma-70 [Corchorus capsularis]
          Length = 576

 Score =  642 bits (1657), Expect = 0.0
 Identities = 354/611 (57%), Positives = 415/611 (67%), Gaps = 1/611 (0%)
 Frame = -3

Query: 2195 MSCLLPQFNCFPDTFSVNFKSPQLHHSKCKDTIYLQTQCVLXXXXXXXXXXXTVXXXXXX 2016
            MSCLLPQF C PDTFS+ F++   HHSK K++I  +TQCVL                   
Sbjct: 1    MSCLLPQFKCQPDTFSIQFRTHHSHHSKHKESICFRTQCVL------------------- 41

Query: 2015 XXXXXDANANPLSREQSWKLPISETATTA-LDLEQLRIPSLETHSSSESVNKQWMYTEII 1839
                            S   P + TATTA LDLE+LR+PS E   +S   ++ W Y    
Sbjct: 42   ----------------STSSPSTSTATTAVLDLEKLRLPSFEAQPNSVVADRPW-YRGAT 84

Query: 1838 GQPVEARLGAPLTKETLYTSXXXXXXXXXXXXXXXXXXXXXXXXXXALMVNFSNSIIADT 1659
            G P EA  GA LT E L  S                          ALM    NS   + 
Sbjct: 85   GPPSEASFGASLTTENLLKSDDAVIASAAAEAVALARAAVKVAKDAALMAKSFNSSKIEM 144

Query: 1658 NPAATPYSKNYVSESSSLGQLADVGRLRELKSSEVSLGESHASHHPLSDSGDIXXXXXXX 1479
                +  +    S+ +   +    G + +  ++E    E  +     ++S  +       
Sbjct: 145  KSTVSSATDTLTSKWALFTEAERAGIVGDSPTNESD--EDDSEEKSTTESDKLEPTNEEL 202

Query: 1478 XXXXXXXEKSIAVRSSRQXXXXXXXXXXXXXXXANVVXXXXXXXXXXXXXSVQEVDYSDP 1299
                    +SIAVRS RQ               +N V             ++QEVDYSDP
Sbjct: 203  EYLEEQLSRSIAVRSRRQTERKAKRTRAAEKASSNAVSLRSGSNSRKKRGALQEVDYSDP 262

Query: 1298 LRYLRGTTSSSRLLTAAEEQQLSEGIQDLLKLERLQDELTQRCGTQPTFTQWAAAAGVDQ 1119
            LRYLRGTTS+SRLLTA EE +LSEGIQDLLKLERL++EL +RCG QPTF+QWAAAAGVDQ
Sbjct: 263  LRYLRGTTSTSRLLTANEELELSEGIQDLLKLERLEEELRERCGGQPTFSQWAAAAGVDQ 322

Query: 1118 KTLRQRLNYGILCKDKMIKSNVRLVISIAKNYQGSGMNLQDLVQEGCRGLVRGAEKFDAS 939
            KTLR+RLNYGILCKDKMIKSN+RLVISIAKNYQG+GMNLQDLVQEGCRGLVRGAEKFDAS
Sbjct: 323  KTLRRRLNYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDAS 382

Query: 938  KGFKFSTYAHWWIRQSVRKSLSDQSRTIRLPFHMVEATYRVKEARKHLFTENGRHPDDDE 759
            KGFKFSTYAHWWI+Q+VRKSLSDQSRTIRLPFHMVEATYRVKEA+K L++ENGRHPD++E
Sbjct: 383  KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEAKKQLYSENGRHPDNEE 442

Query: 758  VAEATGLSMKRLSAVMLTPKAPRSLDQKIGINQNLKPSEVISDPDAETSEDILTKQFMRD 579
            VAEATGLSMKRL AV+LTPKAPRSLDQKIGINQNLKPSEVI+DP+A+T+EDIL KQFM+ 
Sbjct: 443  VAEATGLSMKRLHAVLLTPKAPRSLDQKIGINQNLKPSEVIADPEADTAEDILLKQFMKK 502

Query: 578  DLDKVLDSLKPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKK 399
            DL+KVLDSL  RE+QV+RWRFG+EDGRMKTLQEIGELMGVSRERIRQIESCAFRK+KNKK
Sbjct: 503  DLEKVLDSLGQRERQVIRWRFGMEDGRMKTLQEIGELMGVSRERIRQIESCAFRKMKNKK 562

Query: 398  RTKHLQQYILA 366
            RTK+LQQY+++
Sbjct: 563  RTKNLQQYLVS 573


>XP_010097670.1 RNA polymerase sigma factor rpoD [Morus notabilis] EXB70625.1 RNA
            polymerase sigma factor rpoD [Morus notabilis]
          Length = 574

 Score =  641 bits (1653), Expect = 0.0
 Identities = 361/618 (58%), Positives = 415/618 (67%), Gaps = 8/618 (1%)
 Frame = -3

Query: 2195 MSCLLPQFNCFPDTFSVNFK-------SPQLHHSKCKDTIYLQTQCVLXXXXXXXXXXXT 2037
            MSCLLPQFNC PDTFS  F        +P  H  K +D   L  QCVL            
Sbjct: 1    MSCLLPQFNCKPDTFSAQFNFRTHSLPTPNSHLPKARDINSL-AQCVL------------ 47

Query: 2036 VXXXXXXXXXXXDANANPLSREQSWKLPISETATTALDLEQLRIPSLETHSSSESVNKQW 1857
                         +  +P +         S  AT  L +E+LR PSL+ +S S + N+ W
Sbjct: 48   -------------STTSPST---------SVGATYVLSVEKLRFPSLDANSESVTSNRPW 85

Query: 1856 MYTEIIGQPVEARLGAPLTKETLYTSXXXXXXXXXXXXXXXXXXXXXXXXXXALMVNFSN 1677
             YT   G PVEA   A L  ETL TS                          AL+V    
Sbjct: 86   TYTGATGPPVEANFEATLATETLLTSEEAVIAAAAAEAVTLAKAAVKVAKDAALLV---- 141

Query: 1676 SIIADTNPAATPYSKNYV-SESSSLGQLADVGRLRELKSSEVSLGESHASHHPLSDSGDI 1500
                   P+    S + V SE+ ++       R+R+   +E++L E H       +S D+
Sbjct: 142  ------RPSTRAESISLVSSEARNIKTAQAASRVRDSLRAEMALIEDHPPKDAAKESNDL 195

Query: 1499 XXXXXXXXXXXXXXEKSIAVRSSRQXXXXXXXXXXXXXXXANVVXXXXXXXXXXXXXSVQ 1320
                           KSIAVRS RQ               ANVV             SVQ
Sbjct: 196  QPTNEELRILQEQLSKSIAVRSRRQSERKAKRDRAAEKAAANVVAVKSGSNSRKKRASVQ 255

Query: 1319 EVDYSDPLRYLRGTTSSSRLLTAAEEQQLSEGIQDLLKLERLQDELTQRCGTQPTFTQWA 1140
            +VD+SDPLRYLR TTS+SRLLTA EE +LSEGIQDLLKLE+LQ+EL +RCG  PTF QWA
Sbjct: 256  DVDHSDPLRYLRSTTSTSRLLTATEEIELSEGIQDLLKLEKLQEELAERCGGPPTFAQWA 315

Query: 1139 AAAGVDQKTLRQRLNYGILCKDKMIKSNVRLVISIAKNYQGSGMNLQDLVQEGCRGLVRG 960
            AAAGVDQKTLR+R+NYGILCKDKMIKSNVRLVISIAKNYQG+GMNLQDLVQEGCRGLVRG
Sbjct: 316  AAAGVDQKTLRRRINYGILCKDKMIKSNVRLVISIAKNYQGAGMNLQDLVQEGCRGLVRG 375

Query: 959  AEKFDASKGFKFSTYAHWWIRQSVRKSLSDQSRTIRLPFHMVEATYRVKEARKHLFTENG 780
            AEKFDASKGFKFSTYAHWWI+Q+VRKSLSDQSRTIRLPFHMVEATYRVKEARK L++ENG
Sbjct: 376  AEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENG 435

Query: 779  RHPDDDEVAEATGLSMKRLSAVMLTPKAPRSLDQKIGINQNLKPSEVISDPDAETSEDIL 600
            R P+D+EVAEATGLSMKRL+AV+LTPKAPRSL+QKIGINQNLKPSE+I+DPDAET ED+L
Sbjct: 436  RQPNDEEVAEATGLSMKRLAAVLLTPKAPRSLEQKIGINQNLKPSEIIADPDAETLEDVL 495

Query: 599  TKQFMRDDLDKVLDSLKPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAF 420
            T+QFM+ DLDKVLDSL  REKQV+RWRFG++DGRMKTLQEIGELMGVSRERIRQIESCAF
Sbjct: 496  TRQFMKQDLDKVLDSLNQREKQVIRWRFGMDDGRMKTLQEIGELMGVSRERIRQIESCAF 555

Query: 419  RKLKNKKRTKHLQQYILA 366
            RKLKNKKRTKHLQQY+++
Sbjct: 556  RKLKNKKRTKHLQQYLIS 573


>KDO49412.1 hypothetical protein CISIN_1g007404mg [Citrus sinensis]
          Length = 605

 Score =  640 bits (1650), Expect = 0.0
 Identities = 357/616 (57%), Positives = 414/616 (67%), Gaps = 7/616 (1%)
 Frame = -3

Query: 2195 MSCLLPQFNCFPDTFSVNFKSPQLHH------SKCKDTIYLQTQCVLXXXXXXXXXXXTV 2034
            MSCLLPQF C PDTFS++F++   H       SK K+ I  +T CVL             
Sbjct: 24   MSCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICFRTHCVL------------- 70

Query: 2033 XXXXXXXXXXXDANANPLSREQSWKLPISETA-TTALDLEQLRIPSLETHSSSESVNKQW 1857
                                  S   P + TA TT LD+E+LR+PSLE HS++ + N+QW
Sbjct: 71   ----------------------STTSPSTSTAMTTVLDVEKLRLPSLEAHSNAVAANRQW 108

Query: 1856 MYTEIIGQPVEARLGAPLTKETLYTSXXXXXXXXXXXXXXXXXXXXXXXXXXALMVNFSN 1677
             Y   +G   E  LG  L  ETL TS                          ALMVN  N
Sbjct: 109  TYFGAVGPSTEENLGTSLATETL-TSDEAVIAAASAEAVALARAAVKVAKDAALMVNHHN 167

Query: 1676 SIIADTNPAATPYSKNYVSESSSLGQLADVGRLRELKSSEVSLGESHASHHPLSDSGDIX 1497
            S    + PA +  +    S  + L +      + +    E +  E ++   PL+ S D+ 
Sbjct: 168  SAKPKSKPAISSSADTNTSMWAQLTERERASIIGDSVIVEAAPEEEYSEQQPLNKSADLE 227

Query: 1496 XXXXXXXXXXXXXEKSIAVRSSRQXXXXXXXXXXXXXXXANVVXXXXXXXXXXXXXSVQE 1317
                          +SIAVRS RQ               ANV+             SVQE
Sbjct: 228  PTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQE 287

Query: 1316 VDYSDPLRYLRGTTSSSRLLTAAEEQQLSEGIQDLLKLERLQDELTQRCGTQPTFTQWAA 1137
            VDYSDPLRYLR TTSSSRLLTA EE QLS GIQDLLKLE L++ L++RCG  PTF QWAA
Sbjct: 288  VDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 347

Query: 1136 AAGVDQKTLRQRLNYGILCKDKMIKSNVRLVISIAKNYQGSGMNLQDLVQEGCRGLVRGA 957
            AAGVDQ+ LR+RLNYGILCKDKMI SN+RLVISIAKNYQG+GMNLQDLVQEGCRGLVRGA
Sbjct: 348  AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 407

Query: 956  EKFDASKGFKFSTYAHWWIRQSVRKSLSDQSRTIRLPFHMVEATYRVKEARKHLFTENGR 777
            EKFDASKGFKFSTYAHWWI+Q+VRKSLSDQSRTIRLPFHMVEATYRVKEARK L++ENGR
Sbjct: 408  EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR 467

Query: 776  HPDDDEVAEATGLSMKRLSAVMLTPKAPRSLDQKIGINQNLKPSEVISDPDAETSEDILT 597
            HP+++EVAEATGLSMKRL AV+L+PKAPRSLDQKIGINQNLKPSEVI+DP+AET+ED+L 
Sbjct: 468  HPNNEEVAEATGLSMKRLHAVLLSPKAPRSLDQKIGINQNLKPSEVIADPEAETAEDLLI 527

Query: 596  KQFMRDDLDKVLDSLKPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFR 417
            K+FM++DL+KVLD+L PRE+QVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES AFR
Sbjct: 528  KKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFR 587

Query: 416  KLKNKKRTKHLQQYIL 369
            KLKNKKRTKHL QY +
Sbjct: 588  KLKNKKRTKHLMQYAI 603


>XP_006484754.1 PREDICTED: RNA polymerase sigma factor sigB isoform X1 [Citrus
            sinensis]
          Length = 605

 Score =  639 bits (1648), Expect = 0.0
 Identities = 357/616 (57%), Positives = 413/616 (67%), Gaps = 7/616 (1%)
 Frame = -3

Query: 2195 MSCLLPQFNCFPDTFSVNFKSPQLHH------SKCKDTIYLQTQCVLXXXXXXXXXXXTV 2034
            MSCLLPQF C PDTFS++F++   H       SK K+ I  +T CVL             
Sbjct: 24   MSCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICFRTHCVL------------- 70

Query: 2033 XXXXXXXXXXXDANANPLSREQSWKLPISETA-TTALDLEQLRIPSLETHSSSESVNKQW 1857
                                  S   P + TA TT LD+E+LR+PSLE HS++ + N+QW
Sbjct: 71   ----------------------STTSPSTSTAMTTVLDVEKLRLPSLEAHSNAVAANRQW 108

Query: 1856 MYTEIIGQPVEARLGAPLTKETLYTSXXXXXXXXXXXXXXXXXXXXXXXXXXALMVNFSN 1677
             Y   +G   E  LG  L  ETL TS                          ALMVN  N
Sbjct: 109  TYFGAVGPSTEENLGTSLATETL-TSDEAVIAAASAEAVALARAAVKVAKDAALMVNHHN 167

Query: 1676 SIIADTNPAATPYSKNYVSESSSLGQLADVGRLRELKSSEVSLGESHASHHPLSDSGDIX 1497
            S    + PA +  +    S  + L +      + +    E +  E ++   PL+ S D+ 
Sbjct: 168  SAKPKSKPAISLSADTNTSMWAQLTERERASIIGDSVIVEAAPEEEYSEQQPLNKSADLE 227

Query: 1496 XXXXXXXXXXXXXEKSIAVRSSRQXXXXXXXXXXXXXXXANVVXXXXXXXXXXXXXSVQE 1317
                          +SIAVRS RQ               ANV+             SVQE
Sbjct: 228  PTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTSRRKRPSVQE 287

Query: 1316 VDYSDPLRYLRGTTSSSRLLTAAEEQQLSEGIQDLLKLERLQDELTQRCGTQPTFTQWAA 1137
            VDYSDPLRYLR TTSSSRLLTA EE QLS GIQDLLKLE L++ L++RCG  PTF QWAA
Sbjct: 288  VDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 347

Query: 1136 AAGVDQKTLRQRLNYGILCKDKMIKSNVRLVISIAKNYQGSGMNLQDLVQEGCRGLVRGA 957
            AAGVDQ+ LR+RLNYGILCKDKMI SN+RLVISIAKNYQG+GMNLQDLVQEGCRGLVRGA
Sbjct: 348  AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 407

Query: 956  EKFDASKGFKFSTYAHWWIRQSVRKSLSDQSRTIRLPFHMVEATYRVKEARKHLFTENGR 777
            EKFDASKGFKFSTYAHWWI+Q+VRKSLSDQSRTIRLPFHMVEATYRVKEARK L++ENGR
Sbjct: 408  EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR 467

Query: 776  HPDDDEVAEATGLSMKRLSAVMLTPKAPRSLDQKIGINQNLKPSEVISDPDAETSEDILT 597
            HP+++EVAEATGLSMKRL AV+LTPKAPRSLDQK GINQNLKPSEVI+DP+AET+ED+L 
Sbjct: 468  HPNNEEVAEATGLSMKRLHAVLLTPKAPRSLDQKFGINQNLKPSEVIADPEAETAEDLLI 527

Query: 596  KQFMRDDLDKVLDSLKPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFR 417
            K+FM++DL+KVLD+L PRE+QVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES AFR
Sbjct: 528  KKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFR 587

Query: 416  KLKNKKRTKHLQQYIL 369
            KLKNKKRTKHL QY +
Sbjct: 588  KLKNKKRTKHLMQYAI 603


>XP_019224549.1 PREDICTED: RNA polymerase sigma factor sigB-like [Nicotiana
            attenuata] OIT33290.1 rna polymerase sigma factor sigb
            [Nicotiana attenuata]
          Length = 641

 Score =  640 bits (1650), Expect = 0.0
 Identities = 364/619 (58%), Positives = 425/619 (68%), Gaps = 9/619 (1%)
 Frame = -3

Query: 2195 MSCLLPQFNCFPDTFSVNFKSPQ---LHHSKCKDTIYLQTQCVLXXXXXXXXXXXT-VXX 2028
            MS LLPQF   PDTF + FK+ Q   +  SK +D I+L+TQC+L           + V  
Sbjct: 25   MSYLLPQFKSLPDTFVLCFKTNQNSTIQLSKGRDHIHLRTQCILATTSAATSTATSTVLN 84

Query: 2027 XXXXXXXXXDANANPLSREQSWKLPISETATTA-LDLEQLRIPSLETHSSSESVNKQWMY 1851
                     +  ++ ++ E+SWK P   TAT+A LD+ +L++ S E +  S + ++ W Y
Sbjct: 85   IEKLKLPSIEILSSSVAVERSWKPP--STATSAVLDIPRLKLLSFEANPDSVAPDRPWTY 142

Query: 1850 TEIIGQPVEARLGAPLTKETLYTSXXXXXXXXXXXXXXXXXXXXXXXXXXALMVNFSNSI 1671
            T  +G P EA   + L  E L TS                           L+V+ +N  
Sbjct: 143  TGAVGPPTEANTKSALATENLVTSDEAVVAAAAAEAVALAKAALKFAKDAVLLVSQNNLN 202

Query: 1670 IADTNPAAT-PYSKNYVSESSSLGQLADVGRL---RELKSSEVSLGESHASHHPLSDSGD 1503
             +D     T   ++    ES  L Q ++ GR+    E K SE+   +S      L+DS D
Sbjct: 203  NSDDAGRGTLSEARTTPFESVPLAQPSETGRVGVGAEFKGSEMKWSKSSLFEDSLTDSDD 262

Query: 1502 IXXXXXXXXXXXXXXEKSIAVRSSRQXXXXXXXXXXXXXXXANVVXXXXXXXXXXXXXSV 1323
            +                 IAV+S+RQ               ANVV             SV
Sbjct: 263  LEPSPEELEILQSQLSNVIAVKSTRQTERKARRGRAAERAAANVVSVKSGSTSRKKRTSV 322

Query: 1322 QEVDYSDPLRYLRGTTSSSRLLTAAEEQQLSEGIQDLLKLERLQDELTQRCGTQPTFTQW 1143
            QEVDYSDPLRYLRGTT SSRLLTA+EEQ+LS GIQDLLKLERL+ EL +RCG QPT  QW
Sbjct: 323  QEVDYSDPLRYLRGTTGSSRLLTASEEQELSRGIQDLLKLERLEQELAERCGGQPTIAQW 382

Query: 1142 AAAAGVDQKTLRQRLNYGILCKDKMIKSNVRLVISIAKNYQGSGMNLQDLVQEGCRGLVR 963
            AAAAGV+QKTLR+RLNYGILCKDKMIKSNVRLVISIAKNYQG GMNLQDLVQEGCRGLVR
Sbjct: 383  AAAAGVEQKTLRKRLNYGILCKDKMIKSNVRLVISIAKNYQGVGMNLQDLVQEGCRGLVR 442

Query: 962  GAEKFDASKGFKFSTYAHWWIRQSVRKSLSDQSRTIRLPFHMVEATYRVKEARKHLFTEN 783
            GAEKFDA+KGFKFSTYAHWWI+Q+VRKSLSDQSRTIRLPFHMVEATYRVKEARK LFTEN
Sbjct: 443  GAEKFDAAKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLFTEN 502

Query: 782  GRHPDDDEVAEATGLSMKRLSAVMLTPKAPRSLDQKIGINQNLKPSEVISDPDAETSEDI 603
            GR P+D+E+AEATGLSMKRL+AVMLTPKAPRSLDQKIG NQ+LKPSEVI+DP+AETSE++
Sbjct: 503  GRLPNDEELAEATGLSMKRLTAVMLTPKAPRSLDQKIGFNQSLKPSEVIADPEAETSEEM 562

Query: 602  LTKQFMRDDLDKVLDSLKPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCA 423
            L KQFMR DL+KVLD+L PREKQVV+WRFGL DGRMKTLQEIGELMGVSRERIRQIESCA
Sbjct: 563  LMKQFMRQDLEKVLDTLNPREKQVVKWRFGLADGRMKTLQEIGELMGVSRERIRQIESCA 622

Query: 422  FRKLKNKKRTKHLQQYILA 366
            FRKLKNKKRTK LQQYI A
Sbjct: 623  FRKLKNKKRTKFLQQYITA 641


>XP_009599122.1 PREDICTED: RNA polymerase sigma factor sigB-like [Nicotiana
            tomentosiformis] XP_016487692.1 PREDICTED: RNA polymerase
            sigma factor sigB-like [Nicotiana tabacum]
          Length = 641

 Score =  639 bits (1649), Expect = 0.0
 Identities = 363/622 (58%), Positives = 423/622 (68%), Gaps = 12/622 (1%)
 Frame = -3

Query: 2195 MSCLLPQFNCFPDTFSVNFKSPQ---LHHSKCKDTIYLQTQCVLXXXXXXXXXXXT-VXX 2028
            MS LLPQF   PDTF + FK+ Q   +  SK +D I+L+TQC+L           + V  
Sbjct: 25   MSYLLPQFKSLPDTFVLCFKTNQNSTIQLSKGRDHIHLRTQCILATTSAATSTATSTVLD 84

Query: 2027 XXXXXXXXXDANANPLSREQSWKLPISETATTA-LDLEQLRIPSLETHSSSESVNKQWMY 1851
                     +  ++ ++ E+SWK P   TAT+A LD+ +L++ S E +  S + ++ W Y
Sbjct: 85   IEKLKLPSIEILSSSVAAERSWKPP--STATSAVLDIPRLKLLSFEANPDSVAPDRPWTY 142

Query: 1850 TEIIGQPVEARLGAPLTKETLYTSXXXXXXXXXXXXXXXXXXXXXXXXXXALMVNFSNSI 1671
            T  +G P EA   + L  E L TS                           L+V  +N  
Sbjct: 143  TGPVGPPTEANTKSVLATENLVTSDEAVVAAAAAEAVALAKAALKFAKDVVLLVGHNNLK 202

Query: 1670 IAD-------TNPAATPYSKNYVSESSSLGQLADVGRLRELKSSEVSLGESHASHHPLSD 1512
             +D       +    TP+   ++++ S  G+   VG   E K SE+   ES      L+D
Sbjct: 203  NSDDAGRGTLSEARTTPFESVHLAQPSETGR---VGVGAEFKGSEMKWSESSLLEDSLTD 259

Query: 1511 SGDIXXXXXXXXXXXXXXEKSIAVRSSRQXXXXXXXXXXXXXXXANVVXXXXXXXXXXXX 1332
            S D+                 IAV+S+RQ               ANVV            
Sbjct: 260  SDDLDPSPEELEILQSQLSNVIAVKSTRQTERKARRGRAAERAAANVVSVKSGSTSRKKR 319

Query: 1331 XSVQEVDYSDPLRYLRGTTSSSRLLTAAEEQQLSEGIQDLLKLERLQDELTQRCGTQPTF 1152
             SVQEVDYSDPLRYLRGTT SSRLLTA+EEQ+LS GIQD LKLERL+ EL  RCG QPT 
Sbjct: 320  TSVQEVDYSDPLRYLRGTTGSSRLLTASEEQELSRGIQDQLKLERLEQELADRCGGQPTI 379

Query: 1151 TQWAAAAGVDQKTLRQRLNYGILCKDKMIKSNVRLVISIAKNYQGSGMNLQDLVQEGCRG 972
             QWAAAAGV+QKTLR+RLNYGILCKDKMIKSNVRLVISIAKNYQG GMNLQDLVQEGCRG
Sbjct: 380  AQWAAAAGVEQKTLRKRLNYGILCKDKMIKSNVRLVISIAKNYQGVGMNLQDLVQEGCRG 439

Query: 971  LVRGAEKFDASKGFKFSTYAHWWIRQSVRKSLSDQSRTIRLPFHMVEATYRVKEARKHLF 792
            LVRGAEKFDA+KGFKFSTYAHWWI+Q+VRKSLSDQSRTIRLPFHMVEATYRVKEARK LF
Sbjct: 440  LVRGAEKFDAAKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLF 499

Query: 791  TENGRHPDDDEVAEATGLSMKRLSAVMLTPKAPRSLDQKIGINQNLKPSEVISDPDAETS 612
            TENGR P+D+EVAEATGLSMKRL+AVMLTPKAPRSLDQKIG NQ+LKPSEVI+DP+AETS
Sbjct: 500  TENGRLPNDEEVAEATGLSMKRLTAVMLTPKAPRSLDQKIGFNQSLKPSEVIADPEAETS 559

Query: 611  EDILTKQFMRDDLDKVLDSLKPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIE 432
            E++L KQFMR DL++VLD+L PREKQVV+WRFGL DGRMKTLQEIGELMGVSRERIRQIE
Sbjct: 560  EEMLMKQFMRQDLERVLDTLNPREKQVVKWRFGLADGRMKTLQEIGELMGVSRERIRQIE 619

Query: 431  SCAFRKLKNKKRTKHLQQYILA 366
            SCAFRKLKNKKRTK LQQYI A
Sbjct: 620  SCAFRKLKNKKRTKFLQQYITA 641


>XP_010052664.1 PREDICTED: RNA polymerase sigma factor sigB isoform X1 [Eucalyptus
            grandis]
          Length = 601

 Score =  637 bits (1643), Expect = 0.0
 Identities = 341/528 (64%), Positives = 382/528 (72%)
 Frame = -3

Query: 1949 SETATTALDLEQLRIPSLETHSSSESVNKQWMYTEIIGQPVEARLGAPLTKETLYTSXXX 1770
            S      LD+E+LR+PSLE  + S + N+ W YT  +G P E  LGA L  ETL TS   
Sbjct: 74   SAATAVVLDMEKLRLPSLEVLTDSPTSNRPWTYTGAVGPPAEVNLGATLATETLLTSDEA 133

Query: 1769 XXXXXXXXXXXXXXXXXXXXXXXALMVNFSNSIIADTNPAATPYSKNYVSESSSLGQLAD 1590
                                   ALM+   +S   D     +  +   +S+ + L +L  
Sbjct: 134  VIAAAASEAVTLAKAALKSAKHAALMIRNESSSNIDNKLELSSRTSTSLSKHAELLELEH 193

Query: 1589 VGRLRELKSSEVSLGESHASHHPLSDSGDIXXXXXXXXXXXXXXEKSIAVRSSRQXXXXX 1410
               L EL   E  L E +   +    S D+               KSIAVRS RQ     
Sbjct: 194  SNILTELMEPEGGLREGNVMQYSTDKSEDLEPTHEELQLLQVQLFKSIAVRSRRQTERKE 253

Query: 1409 XXXXXXXXXXANVVXXXXXXXXXXXXXSVQEVDYSDPLRYLRGTTSSSRLLTAAEEQQLS 1230
                      ANVV             ++QEVDYSDPLRYLRGTTSSSRLLTA EE +LS
Sbjct: 254  IRERAAEKAAANVVSVKSGSLSKKKRAALQEVDYSDPLRYLRGTTSSSRLLTATEETELS 313

Query: 1229 EGIQDLLKLERLQDELTQRCGTQPTFTQWAAAAGVDQKTLRQRLNYGILCKDKMIKSNVR 1050
            EGIQDLLKLERLQ ELT+RCG +P F QWAAAAGVDQKTLR+RLNYG LCKDKMIKSN+R
Sbjct: 314  EGIQDLLKLERLQVELTERCGGEPAFAQWAAAAGVDQKTLRKRLNYGRLCKDKMIKSNIR 373

Query: 1049 LVISIAKNYQGSGMNLQDLVQEGCRGLVRGAEKFDASKGFKFSTYAHWWIRQSVRKSLSD 870
            LVISIAKNYQG+GMNLQDLVQEGCRGLVRG EKFDASKGFKFSTYAHWWI+Q+VRKSLSD
Sbjct: 374  LVISIAKNYQGAGMNLQDLVQEGCRGLVRGCEKFDASKGFKFSTYAHWWIKQAVRKSLSD 433

Query: 869  QSRTIRLPFHMVEATYRVKEARKHLFTENGRHPDDDEVAEATGLSMKRLSAVMLTPKAPR 690
            QSRTIRLPFHMVEATYRVKEARK L++ENGR PD++EVAEATGLSMKRL+AV++TPKAPR
Sbjct: 434  QSRTIRLPFHMVEATYRVKEARKQLYSENGRQPDNEEVAEATGLSMKRLNAVLMTPKAPR 493

Query: 689  SLDQKIGINQNLKPSEVISDPDAETSEDILTKQFMRDDLDKVLDSLKPREKQVVRWRFGL 510
            SLDQKIGINQNLKPSEVI+DP+AETSED+L KQFMR DL+KVLD+L PREKQVVRWRFGL
Sbjct: 494  SLDQKIGINQNLKPSEVIADPNAETSEDVLLKQFMRQDLEKVLDTLNPREKQVVRWRFGL 553

Query: 509  EDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYILA 366
            EDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQY+LA
Sbjct: 554  EDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKRTKHLQQYVLA 601


>EOY10370.1 RNApolymerase sigma subunit 2 [Theobroma cacao]
          Length = 623

 Score =  637 bits (1644), Expect = 0.0
 Identities = 351/622 (56%), Positives = 412/622 (66%), Gaps = 12/622 (1%)
 Frame = -3

Query: 2195 MSCLLPQFNCFPDTFSVNFKSPQLHHSKCKDT----IYLQTQCVLXXXXXXXXXXXTVXX 2028
            MSCLLPQF C PDTFS+ F++   HH     T     +   QC              +  
Sbjct: 1    MSCLLPQFKCQPDTFSIQFRTHHSHHFLIAVTGMVKYFSPRQCSCGNLTNPPKVSGLIFV 60

Query: 2027 XXXXXXXXXDANANPLSREQSWKLPISETATTALDLEQLRIPSLETHSSSESVNKQWMYT 1848
                           +    S     S TAT  LD+E+LR+PS E H +S +V++ W Y 
Sbjct: 61   VLAKHKEHICFRTQCVLSTTSSST--STTATAVLDVEKLRLPSFEAHPNSVAVDRPWTYI 118

Query: 1847 EIIGQPVEARLGAPLTKETLYTSXXXXXXXXXXXXXXXXXXXXXXXXXXALMVNFSNSII 1668
               G P EA LGA L  + L TS                          ALM    N   
Sbjct: 119  GATGPPSEASLGATLATDNLLTSDEAVIAAAAAEAVALARAAVKVAKDAALMAENYNYAK 178

Query: 1667 ADTNPAATPYSKNYVSESSSLGQLADVGRLRELKSSEVSLGESHASHHPLSDSGDIXXXX 1488
             +     +  + ++ S+ +   +    G + +  + E  + E  +  +  ++S ++    
Sbjct: 179  TEMKSGVSFATDSFTSKWALFTEAERAGIIGDSPTDESEMEEDDSEQNSTTESDELEPTN 238

Query: 1487 XXXXXXXXXXEKSIAVRSSRQXXXXXXXXXXXXXXXANVVXXXXXXXXXXXXXSVQEVDY 1308
                       +SIAVRS RQ               ANVV             ++Q+VDY
Sbjct: 239  EELEHLEEQLSRSIAVRSRRQTERKAKRTRAAEKAAANVVSVKSGSTNRKRRGALQDVDY 298

Query: 1307 SDPLRYLRGTTSSSRLLTAAEEQQLSEGIQDLLKLERLQDELTQRCGTQPTFTQWAAAAG 1128
            SDPLRYLRGTTS+SRLLTA EE +LSEGIQDLLKLERLQ+EL +RCG QPTF QWAAAAG
Sbjct: 299  SDPLRYLRGTTSTSRLLTANEELELSEGIQDLLKLERLQEELAERCGGQPTFAQWAAAAG 358

Query: 1127 VDQKTLRQRLNYGILCKDKMIKSNVRLVISIAKNYQGSGMNLQDLVQEGCRGLVRGAEKF 948
            VDQKTLR RLNYG+ CKDKMIKSN+RLVISIAKNYQG+GMNLQDLVQEGCRGLVRGAEKF
Sbjct: 359  VDQKTLRSRLNYGVHCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKF 418

Query: 947  DASKGFKFSTYAHWWIRQSVRKSLSDQSRTIRLPFHMVEATYRVKEARKHLFTENGRHPD 768
            DASKGFKFSTYAHWWI+Q+VRKSLSDQSRTIRLPFHMVEATYRVKEARK L++ENGRHPD
Sbjct: 419  DASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPD 478

Query: 767  DDEVAEATGLSMKRLSAVMLTPKAPRSLDQKIGINQNLKPS--------EVISDPDAETS 612
            ++EVAEATGLSMKRL+AV+LTPKAPRSLDQKIGINQNLKPS        EVI+DP+AET+
Sbjct: 479  NEEVAEATGLSMKRLTAVLLTPKAPRSLDQKIGINQNLKPSVCPVSSLAEVIADPEAETA 538

Query: 611  EDILTKQFMRDDLDKVLDSLKPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIE 432
            ED+L KQFMR DL+KVLDSL  RE+QV+RWRFG+EDGRMKTLQEIGELMGVSRERIRQIE
Sbjct: 539  EDMLIKQFMRKDLEKVLDSLSQRERQVIRWRFGMEDGRMKTLQEIGELMGVSRERIRQIE 598

Query: 431  SCAFRKLKNKKRTKHLQQYILA 366
            SCAFRKLKNKKRTKHLQQY+L+
Sbjct: 599  SCAFRKLKNKKRTKHLQQYLLS 620


>XP_012434812.1 PREDICTED: RNA polymerase sigma factor sigB [Gossypium raimondii]
            KJB46070.1 hypothetical protein B456_007G347300
            [Gossypium raimondii]
          Length = 578

 Score =  635 bits (1639), Expect = 0.0
 Identities = 341/610 (55%), Positives = 404/610 (66%)
 Frame = -3

Query: 2195 MSCLLPQFNCFPDTFSVNFKSPQLHHSKCKDTIYLQTQCVLXXXXXXXXXXXTVXXXXXX 2016
            MSCLLPQF C PDTFS+ F++   HHSK K++I  ++QCVL                   
Sbjct: 1    MSCLLPQFKCQPDTFSIQFRAHHSHHSKHKESICFRSQCVL------------------- 41

Query: 2015 XXXXXDANANPLSREQSWKLPISETATTALDLEQLRIPSLETHSSSESVNKQWMYTEIIG 1836
                            S     S   T  LD+E+LR+PS E HS+S   ++ W YT   G
Sbjct: 42   ----------------STTSSTSMATTAVLDVEKLRLPSFEAHSNSVVTDRPWTYTGATG 85

Query: 1835 QPVEARLGAPLTKETLYTSXXXXXXXXXXXXXXXXXXXXXXXXXXALMVNFSNSIIADTN 1656
             P EA  GA L  E L TS                          A+MV    S   +  
Sbjct: 86   PPSEASFGATLATENLLTSDEAVIAAAAAEAVALARAAAKVAKDAAIMVKNHGSAKTEMK 145

Query: 1655 PAATPYSKNYVSESSSLGQLADVGRLRELKSSEVSLGESHASHHPLSDSGDIXXXXXXXX 1476
               +  +    S+     +    G + +  S E+ L E H   +   +S ++        
Sbjct: 146  SPGSSATDTLTSKWGLFTEAERAGIVGDYVSDELELEEDHLEQNSTKESDELEPTNEELK 205

Query: 1475 XXXXXXEKSIAVRSSRQXXXXXXXXXXXXXXXANVVXXXXXXXXXXXXXSVQEVDYSDPL 1296
                   +SIAVRS RQ                NVV             ++Q++DYSDPL
Sbjct: 206  LLEEQLSRSIAVRSHRQTERKAKRTRAAEKAATNVVSVKSGSTNRKRRGALQDIDYSDPL 265

Query: 1295 RYLRGTTSSSRLLTAAEEQQLSEGIQDLLKLERLQDELTQRCGTQPTFTQWAAAAGVDQK 1116
            RYLRGTT++S+LLTA EE +LSEGIQDLLKLE L +EL +RCG  PTF QWAAAA VD+K
Sbjct: 266  RYLRGTTNTSKLLTANEELELSEGIQDLLKLEGLHEELAERCGRPPTFAQWAAAAEVDRK 325

Query: 1115 TLRQRLNYGILCKDKMIKSNVRLVISIAKNYQGSGMNLQDLVQEGCRGLVRGAEKFDASK 936
            TLR+RLNYG +C DKMIKSN+RLVISIAKNYQG+GMNLQDLVQEGCRGL+RGAEKFDASK
Sbjct: 326  TLRERLNYGTICMDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLIRGAEKFDASK 385

Query: 935  GFKFSTYAHWWIRQSVRKSLSDQSRTIRLPFHMVEATYRVKEARKHLFTENGRHPDDDEV 756
            GFKFSTYAHWWI+Q+VRKSLSDQSRTIRLPFHMVEATYRVKEARK LF+ENGR PD+ EV
Sbjct: 386  GFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLFSENGRQPDNIEV 445

Query: 755  AEATGLSMKRLSAVMLTPKAPRSLDQKIGINQNLKPSEVISDPDAETSEDILTKQFMRDD 576
            AEATGLSMKRL+AV+L PKAPRSLDQKIGINQNLKPSEVI+DP+A+++EDIL KQFM+ D
Sbjct: 446  AEATGLSMKRLTAVLLAPKAPRSLDQKIGINQNLKPSEVIADPEADSAEDILLKQFMKKD 505

Query: 575  LDKVLDSLKPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKKR 396
            L+KVLDSL PRE+QV+RWRFG+EDGR+KTLQEIGE MGVSRERIRQIE CAFRKLKNK+R
Sbjct: 506  LEKVLDSLSPRERQVIRWRFGMEDGRVKTLQEIGESMGVSRERIRQIELCAFRKLKNKRR 565

Query: 395  TKHLQQYILA 366
            TKHLQQY+L+
Sbjct: 566  TKHLQQYLLS 575


>XP_017627350.1 PREDICTED: RNA polymerase sigma factor sigB [Gossypium arboreum]
            KHG18437.1 RNA polymerase sigma factor rpoD [Gossypium
            arboreum]
          Length = 578

 Score =  635 bits (1638), Expect = 0.0
 Identities = 342/611 (55%), Positives = 409/611 (66%), Gaps = 1/611 (0%)
 Frame = -3

Query: 2195 MSCLLPQFNCFPDTFSVNFKSPQLHHSKCKDTIYLQTQCVLXXXXXXXXXXXTVXXXXXX 2016
            MSCLLPQF C PDTFS+ F++   HHSK K++I  ++QCVL                   
Sbjct: 1    MSCLLPQFKCQPDTFSIQFRAHHSHHSKHKESICFRSQCVLSTTSS-------------- 46

Query: 2015 XXXXXDANANPLSREQSWKLPISETATTA-LDLEQLRIPSLETHSSSESVNKQWMYTEII 1839
                                  + TATTA LD+E+LR+PS E HS+S   ++ W YT   
Sbjct: 47   ----------------------TSTATTAVLDVEKLRLPSFEAHSNSVVTDRPWTYTGAT 84

Query: 1838 GQPVEARLGAPLTKETLYTSXXXXXXXXXXXXXXXXXXXXXXXXXXALMVNFSNSIIADT 1659
            G P EA  GA L  E L TS                          A+MV   +S   + 
Sbjct: 85   GPPSEASFGATLATENLLTSDEAVIAAAAAEAVALARAAAKVAKDAAIMVKNHSSAKTEM 144

Query: 1658 NPAATPYSKNYVSESSSLGQLADVGRLRELKSSEVSLGESHASHHPLSDSGDIXXXXXXX 1479
                +  +    S+     +    G + +  S E+ + E     +   +S ++       
Sbjct: 145  KSPGSSATDTLTSKWGLFTEAERAGIVGDYVSDELEMEEDDFEQNSTKESDELEPTNEEL 204

Query: 1478 XXXXXXXEKSIAVRSSRQXXXXXXXXXXXXXXXANVVXXXXXXXXXXXXXSVQEVDYSDP 1299
                    +SIAVRS+RQ                NVV             ++Q++DYSDP
Sbjct: 205  KLLEEQLSRSIAVRSNRQPERKAKRTRAAEKAATNVVSVKSGSTNRKRRGALQDIDYSDP 264

Query: 1298 LRYLRGTTSSSRLLTAAEEQQLSEGIQDLLKLERLQDELTQRCGTQPTFTQWAAAAGVDQ 1119
            LRYLRGTT++S+LLTA EE +LSEGIQDLLKLE L +EL +RCG  PTF QWAAAA VD+
Sbjct: 265  LRYLRGTTNTSKLLTANEELELSEGIQDLLKLEVLHEELAERCGRPPTFAQWAAAAEVDR 324

Query: 1118 KTLRQRLNYGILCKDKMIKSNVRLVISIAKNYQGSGMNLQDLVQEGCRGLVRGAEKFDAS 939
            KTLR+RLNYG +CKDKMIKSN+RLVISIAKNYQG+GMNLQDLVQEGCRGL+RGAEKFDAS
Sbjct: 325  KTLRERLNYGTICKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLIRGAEKFDAS 384

Query: 938  KGFKFSTYAHWWIRQSVRKSLSDQSRTIRLPFHMVEATYRVKEARKHLFTENGRHPDDDE 759
            KGFKFSTYAHWWI+Q+VRKSLSDQSRTIRLPFHMVEATYRVKEARK L++ENGR PD+ E
Sbjct: 385  KGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRQPDNIE 444

Query: 758  VAEATGLSMKRLSAVMLTPKAPRSLDQKIGINQNLKPSEVISDPDAETSEDILTKQFMRD 579
            VAEATGLSMKRL+AV+L PKAPRSLDQKIGINQNLKPSEVI+DP+A+++EDIL KQFM+ 
Sbjct: 445  VAEATGLSMKRLTAVLLAPKAPRSLDQKIGINQNLKPSEVIADPEADSAEDILLKQFMKK 504

Query: 578  DLDKVLDSLKPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFRKLKNKK 399
            DL+KVLDSL PRE+QV+RWRFG+EDGRMKTLQEIGE MGVSRERIRQIE CAFRKLKNK+
Sbjct: 505  DLEKVLDSLSPRERQVIRWRFGMEDGRMKTLQEIGESMGVSRERIRQIELCAFRKLKNKR 564

Query: 398  RTKHLQQYILA 366
            RTKHLQQY+L+
Sbjct: 565  RTKHLQQYLLS 575


>XP_010251515.1 PREDICTED: RNA polymerase sigma factor sigB-like isoform X1 [Nelumbo
            nucifera]
          Length = 584

 Score =  635 bits (1637), Expect = 0.0
 Identities = 345/620 (55%), Positives = 416/620 (67%), Gaps = 11/620 (1%)
 Frame = -3

Query: 2195 MSCLLPQFNCFPDTFSVNFKSPQL----------HHSKCKDTIYLQTQCVLXXXXXXXXX 2046
            M+CLLPQF C PDT S++F++ QL          +HSK +D +  QTQCVL         
Sbjct: 1    MACLLPQFKCSPDTISIHFRTHQLQHHKHHHCNNNHSKSRDLLSFQTQCVL--------- 51

Query: 2045 XXTVXXXXXXXXXXXDANANPLSREQSWKLPISETATTALDLEQLRIPSLETHSSSESVN 1866
                                            +   TT +D+E+LR+PSLE+HS S + +
Sbjct: 52   ----------------------------STTTTAMTTTLVDVEKLRMPSLESHSISVASD 83

Query: 1865 KQWMYTEIIGQPVEARLGAPLTKETLYTSXXXXXXXXXXXXXXXXXXXXXXXXXXALMVN 1686
            +   Y    G P +A   A L  E+L T                           ALMVN
Sbjct: 84   RPLSYIGATGPPTKASFEATLAMESLITGDEALIAAAAAEAVALAKEAVEVAKDAALMVN 143

Query: 1685 FSNSIIADTNPAA-TPYSKNYVSESSSLGQLADVGRLRELKSSEVSLGESHASHHPLSDS 1509
              +S  ++  P+  +  S  +  E + L +  +VGR+      E    E  +      DS
Sbjct: 144  DKSSSESENGPSDFSSESHIFRLEKAQLTETQEVGRIDHSVGLESRQEEEQSVQFSNKDS 203

Query: 1508 GDIXXXXXXXXXXXXXXEKSIAVRSSRQXXXXXXXXXXXXXXXANVVXXXXXXXXXXXXX 1329
              +               KSIAVRS RQ                NV+             
Sbjct: 204  DGLDSSDEEFKLLQMQLLKSIAVRSGRQTERQARRARAMEKASTNVLSVKSGHSSRKRRA 263

Query: 1328 SVQEVDYSDPLRYLRGTTSSSRLLTAAEEQQLSEGIQDLLKLERLQDELTQRCGTQPTFT 1149
            ++Q++DYSDPLRYLRGTTS+SRLLTA EE +LSEGIQDLLKLE+L +EL +RCG QPTF 
Sbjct: 264  ALQDIDYSDPLRYLRGTTSTSRLLTATEELELSEGIQDLLKLEKLHEELAERCGGQPTFA 323

Query: 1148 QWAAAAGVDQKTLRQRLNYGILCKDKMIKSNVRLVISIAKNYQGSGMNLQDLVQEGCRGL 969
            QWAAAAGVDQKTLR+RLNYGILCKDKMIKSN+RLVISIAKNYQG+GMNLQDLVQEGCRGL
Sbjct: 324  QWAAAAGVDQKTLRKRLNYGILCKDKMIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGL 383

Query: 968  VRGAEKFDASKGFKFSTYAHWWIRQSVRKSLSDQSRTIRLPFHMVEATYRVKEARKHLFT 789
            V+GAEKFDASKGFKFSTYAHWWI+Q+VRKSLSDQSRTIRLPFHMVEATYRV+EA+K L++
Sbjct: 384  VKGAEKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVREAKKQLYS 443

Query: 788  ENGRHPDDDEVAEATGLSMKRLSAVMLTPKAPRSLDQKIGINQNLKPSEVISDPDAETSE 609
            ENGRHPD++EVAEATGLSMKRL+AV+LTPKAP SLDQKIG+NQ++KPSE+I+DPDAET+E
Sbjct: 444  ENGRHPDNEEVAEATGLSMKRLTAVLLTPKAPISLDQKIGMNQDMKPSEIIADPDAETAE 503

Query: 608  DILTKQFMRDDLDKVLDSLKPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES 429
            ++L KQFM+ DL+KVLDSL PREKQV+RWRFG+EDGRMKTLQEIGELMGVSRERIRQIES
Sbjct: 504  ELLIKQFMKQDLEKVLDSLNPREKQVIRWRFGMEDGRMKTLQEIGELMGVSRERIRQIES 563

Query: 428  CAFRKLKNKKRTKHLQQYIL 369
            CAFRKLKNK+RTK+LQQY++
Sbjct: 564  CAFRKLKNKRRTKNLQQYVI 583


>XP_006437338.1 hypothetical protein CICLE_v10030998mg [Citrus clementina] ESR50578.1
            hypothetical protein CICLE_v10030998mg [Citrus
            clementina]
          Length = 605

 Score =  635 bits (1639), Expect = 0.0
 Identities = 355/616 (57%), Positives = 412/616 (66%), Gaps = 7/616 (1%)
 Frame = -3

Query: 2195 MSCLLPQFNCFPDTFSVNFKSPQLHH------SKCKDTIYLQTQCVLXXXXXXXXXXXTV 2034
            MSCLLPQF C PDTFS++F++   H       SK K+ I  +T CVL             
Sbjct: 24   MSCLLPQFKCQPDTFSIHFRTLHNHQHHSSHPSKSKEPICFRTHCVL------------- 70

Query: 2033 XXXXXXXXXXXDANANPLSREQSWKLPISETA-TTALDLEQLRIPSLETHSSSESVNKQW 1857
                                  S   P + TA TT LD+E+LR+PSLE HS++ + N+QW
Sbjct: 71   ----------------------STTSPSTSTAMTTVLDVEKLRLPSLEAHSNAVAANRQW 108

Query: 1856 MYTEIIGQPVEARLGAPLTKETLYTSXXXXXXXXXXXXXXXXXXXXXXXXXXALMVNFSN 1677
             Y   +G   E  LG  L  ETL TS                          ALMVN  N
Sbjct: 109  TYFGAVGPSTEENLGTSLATETL-TSDEAVIAAASAEAVALARAAVKVAKDAALMVNHHN 167

Query: 1676 SIIADTNPAATPYSKNYVSESSSLGQLADVGRLRELKSSEVSLGESHASHHPLSDSGDIX 1497
            S    + PA +  +    S  + L +      + +    E +  E ++   PL+ S D+ 
Sbjct: 168  SAKPKSKPAISLSADTSTSMWAQLTERERASIIGDSVIVEAAPEEEYSEQQPLNKSADLE 227

Query: 1496 XXXXXXXXXXXXXEKSIAVRSSRQXXXXXXXXXXXXXXXANVVXXXXXXXXXXXXXSVQE 1317
                          +SIAVRS RQ               ANV+             SVQE
Sbjct: 228  PTHEELKLLEEQVSQSIAVRSRRQTERKARRTRAAEKAAANVMSVKSGSTTRRKRPSVQE 287

Query: 1316 VDYSDPLRYLRGTTSSSRLLTAAEEQQLSEGIQDLLKLERLQDELTQRCGTQPTFTQWAA 1137
            VDYSDPLRYLR TTSSSRLLTA EE QLS GIQDLLKLE L++ L++RCG  PTF QWAA
Sbjct: 288  VDYSDPLRYLRATTSSSRLLTANEEMQLSAGIQDLLKLEGLREVLSERCGGSPTFAQWAA 347

Query: 1136 AAGVDQKTLRQRLNYGILCKDKMIKSNVRLVISIAKNYQGSGMNLQDLVQEGCRGLVRGA 957
            AAGVDQ+ LR+RLNYGILCKDKMI SN+RLVISIAKNYQG+GMNLQDLVQEGCRGLVRGA
Sbjct: 348  AAGVDQRELRRRLNYGILCKDKMITSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGA 407

Query: 956  EKFDASKGFKFSTYAHWWIRQSVRKSLSDQSRTIRLPFHMVEATYRVKEARKHLFTENGR 777
            EKFDASKGFKFSTYAHWWI+Q+VRKSLSDQSRTIRLPFHMVEATYRVKEARK L++ENGR
Sbjct: 408  EKFDASKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGR 467

Query: 776  HPDDDEVAEATGLSMKRLSAVMLTPKAPRSLDQKIGINQNLKPSEVISDPDAETSEDILT 597
            HP+++EVA+ATGLSMKRL AV+L PKAPRSLDQK GINQNLKPSEVI+DP+AET+ED+L 
Sbjct: 468  HPNNEEVAKATGLSMKRLHAVLLAPKAPRSLDQKFGINQNLKPSEVIADPEAETAEDLLI 527

Query: 596  KQFMRDDLDKVLDSLKPREKQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESCAFR 417
            K+FM++DL+KVLD+L PRE+QVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIES AFR
Sbjct: 528  KKFMKEDLEKVLDTLNPRERQVVRWRFGLEDGRMKTLQEIGELMGVSRERIRQIESSAFR 587

Query: 416  KLKNKKRTKHLQQYIL 369
            KLKNKKRTKHL QY +
Sbjct: 588  KLKNKKRTKHLMQYAI 603