BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum23_contig00013142
         (1525 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

XP_016489584.1 PREDICTED: DNA-directed RNA polymerase III subuni...   156   8e-61
XP_016489585.1 PREDICTED: DNA-directed RNA polymerase III subuni...   152   2e-59
XP_009607009.1 PREDICTED: DNA-directed RNA polymerase III subuni...   151   3e-59
XP_019246597.1 PREDICTED: DNA-directed RNA polymerase III subuni...   147   1e-58
XP_009784283.1 PREDICTED: DNA-directed RNA polymerase III subuni...   147   2e-58
XP_009607010.1 PREDICTED: DNA-directed RNA polymerase III subuni...   147   5e-58
GAV89032.1 RNA_pol_Rpc4 domain-containing protein [Cephalotus fo...   141   1e-57
XP_019246598.1 PREDICTED: DNA-directed RNA polymerase III subuni...   143   2e-57
XP_009784284.1 PREDICTED: DNA-directed RNA polymerase III subuni...   142   4e-57
XP_018820639.1 PREDICTED: uncharacterized protein LOC108990961 [...   145   1e-56
XP_010035038.1 PREDICTED: DNA-directed RNA polymerase III subuni...   135   2e-55
XP_002510979.1 PREDICTED: DNA-directed RNA polymerase III subuni...   134   3e-55
EOY22841.1 DNA binding protein, putative isoform 2 [Theobroma ca...   130   3e-55
XP_012090466.1 PREDICTED: DNA-directed RNA polymerase III subuni...   137   2e-54
KDP22444.1 hypothetical protein JCGZ_26275 [Jatropha curcas]          137   3e-54
XP_007038340.2 PREDICTED: DNA-directed RNA polymerase III subuni...   129   5e-54
XP_017973633.1 PREDICTED: DNA-directed RNA polymerase III subuni...   124   1e-52
XP_002303490.2 hypothetical protein POPTR_0003s10650g [Populus t...   130   5e-52
OMO94871.1 RNA polymerase III Rpc4 [Corchorus capsularis]             125   5e-52
XP_011027962.1 PREDICTED: DNA-directed RNA polymerase III subuni...   130   8e-52

>XP_016489584.1 PREDICTED: DNA-directed RNA polymerase III subunit RPC4-like
           isoform X1 [Nicotiana tabacum]
          Length = 358

 Score =  156 bits (394), Expect(2) = 8e-61
 Identities = 94/235 (40%), Positives = 129/235 (54%), Gaps = 9/235 (3%)
 Frame = +1

Query: 298 TRQIKFKPNKPSTRKIK-PVSAKIXXXXXXXXXXXXCPQHLIRRVNEHLSTGKSRADKKP 474
           TR++KF P  P  RK + PV  K               + + RRVNE L+  K + +KK 
Sbjct: 12  TRKVKFAPKAPPRRKKQNPVQPKTEADGNEDTNDNEAAEAIRRRVNERLTRQKPKTEKKA 71

Query: 475 TQVAFG---PAPKVLRAFEKPSQVA-GRSNSVSDSKDSAPGNGQNLLPLPYTAGKDEA-- 636
            +VAF     +P  +R F KP ++   R ++V D +     +  +  PLP + G D A  
Sbjct: 72  VEVAFSHGVASPTSIRTFGKPKELTVNRDSTVKDPESDDRMDIDSSPPLPSSIGADLAEI 131

Query: 637 -FATXXXXXXXXXXXYREPWDYENSCYPITLPLRRPNSGDPEILDEAEFGKATTNLDYDE 813
             +            Y+EPWDY ++ YPITLPLRRP +GDPEILDEAEFGKA  N +YDE
Sbjct: 132 SVSNSDALFKRKKKEYKEPWDYHHTNYPITLPLRRPYAGDPEILDEAEFGKAAVNAEYDE 191

Query: 814 NSIDAASELGLREKMDQQRMFFFQLPSDLP-SFRGNAAMRGKTNEPARGGQKLTG 975
           N+I  ASELGL EK D  ++ F QLP++LP + +G     G  + P   G++ TG
Sbjct: 192 NNIHPASELGLLEKKDDVQILFLQLPANLPLATKGGRDTAGCLSSPMLKGKEATG 246



 Score =  108 bits (269), Expect(2) = 8e-61
 Identities = 51/72 (70%), Positives = 61/72 (84%)
 Frame = +3

Query: 1038 LSKGFMGKMLVYKSGAVKLKLGEILYDVSPGSDCSFAQHVAAMNTTQKYFCELGELDKRA 1217
            L  G MGKMLVYKSGA+KLKLG+ILYDVSPG DCSF+Q V A+NT +K+ C+LGE+ KRA
Sbjct: 282  LPAGNMGKMLVYKSGAIKLKLGDILYDVSPGVDCSFSQDVVAINTVEKHCCQLGEIGKRA 341

Query: 1218 VVTPDIDSLLES 1253
            VVTPD+D LL +
Sbjct: 342  VVTPDVDFLLNN 353


>XP_016489585.1 PREDICTED: DNA-directed RNA polymerase III subunit RPC4-like
           isoform X2 [Nicotiana tabacum]
          Length = 357

 Score =  152 bits (383), Expect(2) = 2e-59
 Identities = 94/235 (40%), Positives = 129/235 (54%), Gaps = 9/235 (3%)
 Frame = +1

Query: 298 TRQIKFKPNKPSTRKIK-PVSAKIXXXXXXXXXXXXCPQHLIRRVNEHLSTGKSRADKKP 474
           TR++KF P  P  RK + PV  K               + + RRVNE L+  K + +KK 
Sbjct: 12  TRKVKFAPKAPPRRKKQNPVQPKTEADGNEDTNDNEAAEAIRRRVNERLTRQKPKTEKK- 70

Query: 475 TQVAFG---PAPKVLRAFEKPSQVA-GRSNSVSDSKDSAPGNGQNLLPLPYTAGKDEA-- 636
            +VAF     +P  +R F KP ++   R ++V D +     +  +  PLP + G D A  
Sbjct: 71  VEVAFSHGVASPTSIRTFGKPKELTVNRDSTVKDPESDDRMDIDSSPPLPSSIGADLAEI 130

Query: 637 -FATXXXXXXXXXXXYREPWDYENSCYPITLPLRRPNSGDPEILDEAEFGKATTNLDYDE 813
             +            Y+EPWDY ++ YPITLPLRRP +GDPEILDEAEFGKA  N +YDE
Sbjct: 131 SVSNSDALFKRKKKEYKEPWDYHHTNYPITLPLRRPYAGDPEILDEAEFGKAAVNAEYDE 190

Query: 814 NSIDAASELGLREKMDQQRMFFFQLPSDLP-SFRGNAAMRGKTNEPARGGQKLTG 975
           N+I  ASELGL EK D  ++ F QLP++LP + +G     G  + P   G++ TG
Sbjct: 191 NNIHPASELGLLEKKDDVQILFLQLPANLPLATKGGRDTAGCLSSPMLKGKEATG 245



 Score =  108 bits (269), Expect(2) = 2e-59
 Identities = 51/72 (70%), Positives = 61/72 (84%)
 Frame = +3

Query: 1038 LSKGFMGKMLVYKSGAVKLKLGEILYDVSPGSDCSFAQHVAAMNTTQKYFCELGELDKRA 1217
            L  G MGKMLVYKSGA+KLKLG+ILYDVSPG DCSF+Q V A+NT +K+ C+LGE+ KRA
Sbjct: 281  LPAGNMGKMLVYKSGAIKLKLGDILYDVSPGVDCSFSQDVVAINTVEKHCCQLGEIGKRA 340

Query: 1218 VVTPDIDSLLES 1253
            VVTPD+D LL +
Sbjct: 341  VVTPDVDFLLNN 352


>XP_009607009.1 PREDICTED: DNA-directed RNA polymerase III subunit RPC4-like
           isoform X1 [Nicotiana tomentosiformis]
          Length = 358

 Score =  151 bits (381), Expect(2) = 3e-59
 Identities = 92/235 (39%), Positives = 128/235 (54%), Gaps = 9/235 (3%)
 Frame = +1

Query: 298 TRQIKFKPNKPSTRKIK-PVSAKIXXXXXXXXXXXXCPQHLIRRVNEHLSTGKSRADKKP 474
           TR++KF P  P  RK + PV  K               + + RRVNE L+  K + +KK 
Sbjct: 12  TRKVKFAPKAPPRRKKQNPVQPKTEADGNEDTNDNEAAEAIRRRVNERLTRQKPKTEKKA 71

Query: 475 TQVAFG---PAPKVLRAFEKPSQVAGR-SNSVSDSKDSAPGNGQNLLPLPYTAGKDEA-- 636
            +VAF     +P  +R F KP ++     ++V D +     +  +  PLP + G D A  
Sbjct: 72  VEVAFSHGVASPTSIRTFGKPKELTVNWGSTVKDPESDDRMDIDSSPPLPSSIGADLAEI 131

Query: 637 -FATXXXXXXXXXXXYREPWDYENSCYPITLPLRRPNSGDPEILDEAEFGKATTNLDYDE 813
             +            Y+EPWDY ++ YPITLPLRRP +G+PEILDEAEFGKA  N +YDE
Sbjct: 132 SVSNSDALFKRKKKEYKEPWDYHHTNYPITLPLRRPYAGNPEILDEAEFGKAAVNAEYDE 191

Query: 814 NSIDAASELGLREKMDQQRMFFFQLPSDLP-SFRGNAAMRGKTNEPARGGQKLTG 975
           N+I  ASELGL EK D  ++ F QLP++LP + +G     G  + P   G++ TG
Sbjct: 192 NNIHPASELGLLEKKDDVQILFLQLPANLPLATKGGRDTAGCLSSPMLKGKEATG 246



 Score =  108 bits (269), Expect(2) = 3e-59
 Identities = 51/72 (70%), Positives = 61/72 (84%)
 Frame = +3

Query: 1038 LSKGFMGKMLVYKSGAVKLKLGEILYDVSPGSDCSFAQHVAAMNTTQKYFCELGELDKRA 1217
            L  G MGKMLVYKSGA+KLKLG+ILYDVSPG DCSF+Q V A+NT +K+ C+LGE+ KRA
Sbjct: 282  LPAGNMGKMLVYKSGAIKLKLGDILYDVSPGVDCSFSQDVVAINTVEKHCCQLGEIGKRA 341

Query: 1218 VVTPDIDSLLES 1253
            VVTPD+D LL +
Sbjct: 342  VVTPDVDFLLNN 353


>XP_019246597.1 PREDICTED: DNA-directed RNA polymerase III subunit RPC4-like
           isoform X1 [Nicotiana attenuata]
          Length = 356

 Score =  147 bits (372), Expect(2) = 1e-58
 Identities = 90/235 (38%), Positives = 125/235 (53%), Gaps = 9/235 (3%)
 Frame = +1

Query: 298 TRQIKFKPNKPSTRKIK-PVSAKIXXXXXXXXXXXXCPQHLIRRVNEHLSTGKSRADKKP 474
           TR++KF P  P  RK +  V  K               + ++ RVNE L+  K + +KK 
Sbjct: 12  TRKVKFAPKAPPRRKKQNSVQPKTEADGNEDTNDNEAAEAILHRVNERLTRQKPKTEKKA 71

Query: 475 TQVAFG---PAPKVLRAFEKPSQVA-GRSNSVSDSKDSAPGNGQNLLPLPYTAGKDEA-- 636
            +VAF     +P  +R F KP ++   R ++V D +     +  +  PLP + G D A  
Sbjct: 72  VEVAFAHGVASPTSIRTFGKPKELTVNRGSTVKDPESDDRMDIDSSPPLPASIGADLAEI 131

Query: 637 -FATXXXXXXXXXXXYREPWDYENSCYPITLPLRRPNSGDPEILDEAEFGKATTNLDYDE 813
             +            Y+EPWDY ++ YPITLPLRRP +GDPEILDEAEFGKA  N +YDE
Sbjct: 132 SVSNSDALFKRKKKEYKEPWDYHHTNYPITLPLRRPYAGDPEILDEAEFGKAAANAEYDE 191

Query: 814 NSIDAASELGLREKMDQQRMFFFQLPSDLP-SFRGNAAMRGKTNEPARGGQKLTG 975
            +I  ASELGL EK D  ++ F QLP++LP + +G     G    P   G++  G
Sbjct: 192 TNIHPASELGLLEKKDDVQILFLQLPANLPLATKGGRDTAGCLPSPMLKGKEAAG 246



 Score =  109 bits (273), Expect(2) = 1e-58
 Identities = 54/76 (71%), Positives = 64/76 (84%), Gaps = 1/76 (1%)
 Frame = +3

Query: 1029 NLE-LSKGFMGKMLVYKSGAVKLKLGEILYDVSPGSDCSFAQHVAAMNTTQKYFCELGEL 1205
            NLE L  G MGKMLVYKSGA+KLKLG+ILYDVSPG DCSF+Q V A+NT +K+ C+LGE+
Sbjct: 278  NLEKLPAGNMGKMLVYKSGAIKLKLGDILYDVSPGVDCSFSQDVVAINTVEKHCCQLGEI 337

Query: 1206 DKRAVVTPDIDSLLES 1253
             KRAVVTPD+D LL +
Sbjct: 338  SKRAVVTPDVDFLLNN 353


>XP_009784283.1 PREDICTED: DNA-directed RNA polymerase III subunit RPC4-like
           isoform X1 [Nicotiana sylvestris] XP_016507141.1
           PREDICTED: DNA-directed RNA polymerase III subunit
           RPC4-like isoform X1 [Nicotiana tabacum]
          Length = 356

 Score =  147 bits (370), Expect(2) = 2e-58
 Identities = 91/235 (38%), Positives = 125/235 (53%), Gaps = 9/235 (3%)
 Frame = +1

Query: 298 TRQIKFKPNKPSTRKIK-PVSAKIXXXXXXXXXXXXCPQHLIRRVNEHLSTGKSRADKKP 474
           TR++KF P  P  RK +  V  K               + ++ RVNE L+  K + +KK 
Sbjct: 12  TRKVKFAPKAPPRRKKQNSVQHKTEADRNEDTNDNEAAEAILHRVNERLTRQKPKTEKKA 71

Query: 475 TQVAFG---PAPKVLRAFEKPSQVA-GRSNSVSDSKDSAPGNGQNLLPLPYTAGKDEA-- 636
            +VAF     +P  +R F KP ++A  R ++V D +     +  +  PLP +   D A  
Sbjct: 72  VEVAFAHGVASPTSIRTFGKPKELAINRGSTVKDPESDDRMDIDSSPPLPSSIEADLAEI 131

Query: 637 -FATXXXXXXXXXXXYREPWDYENSCYPITLPLRRPNSGDPEILDEAEFGKATTNLDYDE 813
             +            Y+EPWDY ++ YPITLPLRRP +GDPEILDEAEFGKA  N +YDE
Sbjct: 132 SVSNSDALLKRKKKEYKEPWDYHHTNYPITLPLRRPYAGDPEILDEAEFGKAAANAEYDE 191

Query: 814 NSIDAASELGLREKMDQQRMFFFQLPSDLP-SFRGNAAMRGKTNEPARGGQKLTG 975
           N+I  ASELGL EK D  ++ F QLP +LP + +G     G    P   G++  G
Sbjct: 192 NNIHPASELGLLEKKDDVQILFLQLPVNLPLATKGGRDTAGCLPSPMLKGKEAAG 246



 Score =  109 bits (272), Expect(2) = 2e-58
 Identities = 54/76 (71%), Positives = 64/76 (84%), Gaps = 1/76 (1%)
 Frame = +3

Query: 1029 NLE-LSKGFMGKMLVYKSGAVKLKLGEILYDVSPGSDCSFAQHVAAMNTTQKYFCELGEL 1205
            NLE L  G MGKMLVYKSGA+KLKLG+ILYDVSPG DCSF+Q V A+NT +K+ C+LGE+
Sbjct: 278  NLEKLPAGNMGKMLVYKSGAIKLKLGDILYDVSPGVDCSFSQDVVAINTVEKHCCQLGEI 337

Query: 1206 DKRAVVTPDIDSLLES 1253
             KRAVVTPD+D LL +
Sbjct: 338  GKRAVVTPDVDFLLNN 353


>XP_009607010.1 PREDICTED: DNA-directed RNA polymerase III subunit RPC4-like
           isoform X2 [Nicotiana tomentosiformis]
          Length = 357

 Score =  147 bits (370), Expect(2) = 5e-58
 Identities = 92/235 (39%), Positives = 128/235 (54%), Gaps = 9/235 (3%)
 Frame = +1

Query: 298 TRQIKFKPNKPSTRKIK-PVSAKIXXXXXXXXXXXXCPQHLIRRVNEHLSTGKSRADKKP 474
           TR++KF P  P  RK + PV  K               + + RRVNE L+  K + +KK 
Sbjct: 12  TRKVKFAPKAPPRRKKQNPVQPKTEADGNEDTNDNEAAEAIRRRVNERLTRQKPKTEKK- 70

Query: 475 TQVAFG---PAPKVLRAFEKPSQVAGR-SNSVSDSKDSAPGNGQNLLPLPYTAGKDEA-- 636
            +VAF     +P  +R F KP ++     ++V D +     +  +  PLP + G D A  
Sbjct: 71  VEVAFSHGVASPTSIRTFGKPKELTVNWGSTVKDPESDDRMDIDSSPPLPSSIGADLAEI 130

Query: 637 -FATXXXXXXXXXXXYREPWDYENSCYPITLPLRRPNSGDPEILDEAEFGKATTNLDYDE 813
             +            Y+EPWDY ++ YPITLPLRRP +G+PEILDEAEFGKA  N +YDE
Sbjct: 131 SVSNSDALFKRKKKEYKEPWDYHHTNYPITLPLRRPYAGNPEILDEAEFGKAAVNAEYDE 190

Query: 814 NSIDAASELGLREKMDQQRMFFFQLPSDLP-SFRGNAAMRGKTNEPARGGQKLTG 975
           N+I  ASELGL EK D  ++ F QLP++LP + +G     G  + P   G++ TG
Sbjct: 191 NNIHPASELGLLEKKDDVQILFLQLPANLPLATKGGRDTAGCLSSPMLKGKEATG 245



 Score =  108 bits (269), Expect(2) = 5e-58
 Identities = 51/72 (70%), Positives = 61/72 (84%)
 Frame = +3

Query: 1038 LSKGFMGKMLVYKSGAVKLKLGEILYDVSPGSDCSFAQHVAAMNTTQKYFCELGELDKRA 1217
            L  G MGKMLVYKSGA+KLKLG+ILYDVSPG DCSF+Q V A+NT +K+ C+LGE+ KRA
Sbjct: 281  LPAGNMGKMLVYKSGAIKLKLGDILYDVSPGVDCSFSQDVVAINTVEKHCCQLGEIGKRA 340

Query: 1218 VVTPDIDSLLES 1253
            VVTPD+D LL +
Sbjct: 341  VVTPDVDFLLNN 352


>GAV89032.1 RNA_pol_Rpc4 domain-containing protein [Cephalotus follicularis]
          Length = 319

 Score =  141 bits (355), Expect(2) = 1e-57
 Identities = 86/229 (37%), Positives = 122/229 (53%), Gaps = 7/229 (3%)
 Frame = +1

Query: 301 RQIKFKPNKPSTRKIKPVSAKIXXXXXXXXXXXXCPQHLIRRVNEHLSTGKSRADKKPT- 477
           R+++F P  P  R     + +               Q+L+RR NE++   K +A+ K + 
Sbjct: 8   RKVRFTPKAPQNRAKPTPAVQKTEKIDEDKEAAAQAQYLLRRFNENVGRRKPKAENKSSV 67

Query: 478 QVAFG--PAPKVLRAFEKPSQVAGRSNSVSDSKDSAPGNGQNLLPLPYTAGKDEAFA--- 642
           QVAFG       +R F     V+   +S S+ KDS   + +     P +  +D       
Sbjct: 68  QVAFGHGATSTSIRTFGPRRDVSTVKSSASELKDSTSNDEKIFKSSPSSVNEDGVIPYSS 127

Query: 643 -TXXXXXXXXXXXYREPWDYENSCYPITLPLRRPNSGDPEILDEAEFGKATTNLDYDENS 819
                        ++EPWDY +S YP TLPLRRP SGDPE+LDEAEFG+A  N++ +E  
Sbjct: 128 DATVALPLKIKKDHKEPWDYRHSYYPTTLPLRRPYSGDPELLDEAEFGEAARNMECEEKI 187

Query: 820 IDAASELGLREKMDQQRMFFFQLPSDLPSFRGNAAMRGKTNEPARGGQK 966
           I AASELGL EK  ++RMFFFQLP+DLP    +A+++GK    +RG  K
Sbjct: 188 I-AASELGLLEKHGKERMFFFQLPADLPLVERSASIKGKEKAESRGSSK 235



 Score =  112 bits (281), Expect(2) = 1e-57
 Identities = 55/73 (75%), Positives = 62/73 (84%)
 Frame = +3

Query: 1038 LSKGFMGKMLVYKSGAVKLKLGEILYDVSPGSDCSFAQHVAAMNTTQKYFCELGELDKRA 1217
            LS G+MGKMLVYKSGAVKLKLG+ILYDVSPGS+C FAQ V A+NT  K+ C LGEL  RA
Sbjct: 243  LSGGYMGKMLVYKSGAVKLKLGDILYDVSPGSNCVFAQDVVAINTVDKHCCALGELSNRA 302

Query: 1218 VVTPDIDSLLESM 1256
            VVTPD+DSLL S+
Sbjct: 303  VVTPDVDSLLNSV 315


>XP_019246598.1 PREDICTED: DNA-directed RNA polymerase III subunit RPC4-like
           isoform X2 [Nicotiana attenuata]
          Length = 355

 Score =  143 bits (361), Expect(2) = 2e-57
 Identities = 90/235 (38%), Positives = 125/235 (53%), Gaps = 9/235 (3%)
 Frame = +1

Query: 298 TRQIKFKPNKPSTRKIK-PVSAKIXXXXXXXXXXXXCPQHLIRRVNEHLSTGKSRADKKP 474
           TR++KF P  P  RK +  V  K               + ++ RVNE L+  K + +KK 
Sbjct: 12  TRKVKFAPKAPPRRKKQNSVQPKTEADGNEDTNDNEAAEAILHRVNERLTRQKPKTEKK- 70

Query: 475 TQVAFG---PAPKVLRAFEKPSQVA-GRSNSVSDSKDSAPGNGQNLLPLPYTAGKDEA-- 636
            +VAF     +P  +R F KP ++   R ++V D +     +  +  PLP + G D A  
Sbjct: 71  VEVAFAHGVASPTSIRTFGKPKELTVNRGSTVKDPESDDRMDIDSSPPLPASIGADLAEI 130

Query: 637 -FATXXXXXXXXXXXYREPWDYENSCYPITLPLRRPNSGDPEILDEAEFGKATTNLDYDE 813
             +            Y+EPWDY ++ YPITLPLRRP +GDPEILDEAEFGKA  N +YDE
Sbjct: 131 SVSNSDALFKRKKKEYKEPWDYHHTNYPITLPLRRPYAGDPEILDEAEFGKAAANAEYDE 190

Query: 814 NSIDAASELGLREKMDQQRMFFFQLPSDLP-SFRGNAAMRGKTNEPARGGQKLTG 975
            +I  ASELGL EK D  ++ F QLP++LP + +G     G    P   G++  G
Sbjct: 191 TNIHPASELGLLEKKDDVQILFLQLPANLPLATKGGRDTAGCLPSPMLKGKEAAG 245



 Score =  109 bits (273), Expect(2) = 2e-57
 Identities = 54/76 (71%), Positives = 64/76 (84%), Gaps = 1/76 (1%)
 Frame = +3

Query: 1029 NLE-LSKGFMGKMLVYKSGAVKLKLGEILYDVSPGSDCSFAQHVAAMNTTQKYFCELGEL 1205
            NLE L  G MGKMLVYKSGA+KLKLG+ILYDVSPG DCSF+Q V A+NT +K+ C+LGE+
Sbjct: 277  NLEKLPAGNMGKMLVYKSGAIKLKLGDILYDVSPGVDCSFSQDVVAINTVEKHCCQLGEI 336

Query: 1206 DKRAVVTPDIDSLLES 1253
             KRAVVTPD+D LL +
Sbjct: 337  SKRAVVTPDVDFLLNN 352


>XP_009784284.1 PREDICTED: DNA-directed RNA polymerase III subunit RPC4-like
           isoform X2 [Nicotiana sylvestris] XP_016507146.1
           PREDICTED: DNA-directed RNA polymerase III subunit
           RPC4-like isoform X2 [Nicotiana tabacum]
          Length = 355

 Score =  142 bits (359), Expect(2) = 4e-57
 Identities = 91/235 (38%), Positives = 125/235 (53%), Gaps = 9/235 (3%)
 Frame = +1

Query: 298 TRQIKFKPNKPSTRKIK-PVSAKIXXXXXXXXXXXXCPQHLIRRVNEHLSTGKSRADKKP 474
           TR++KF P  P  RK +  V  K               + ++ RVNE L+  K + +KK 
Sbjct: 12  TRKVKFAPKAPPRRKKQNSVQHKTEADRNEDTNDNEAAEAILHRVNERLTRQKPKTEKK- 70

Query: 475 TQVAFG---PAPKVLRAFEKPSQVA-GRSNSVSDSKDSAPGNGQNLLPLPYTAGKDEA-- 636
            +VAF     +P  +R F KP ++A  R ++V D +     +  +  PLP +   D A  
Sbjct: 71  VEVAFAHGVASPTSIRTFGKPKELAINRGSTVKDPESDDRMDIDSSPPLPSSIEADLAEI 130

Query: 637 -FATXXXXXXXXXXXYREPWDYENSCYPITLPLRRPNSGDPEILDEAEFGKATTNLDYDE 813
             +            Y+EPWDY ++ YPITLPLRRP +GDPEILDEAEFGKA  N +YDE
Sbjct: 131 SVSNSDALLKRKKKEYKEPWDYHHTNYPITLPLRRPYAGDPEILDEAEFGKAAANAEYDE 190

Query: 814 NSIDAASELGLREKMDQQRMFFFQLPSDLP-SFRGNAAMRGKTNEPARGGQKLTG 975
           N+I  ASELGL EK D  ++ F QLP +LP + +G     G    P   G++  G
Sbjct: 191 NNIHPASELGLLEKKDDVQILFLQLPVNLPLATKGGRDTAGCLPSPMLKGKEAAG 245



 Score =  109 bits (272), Expect(2) = 4e-57
 Identities = 54/76 (71%), Positives = 64/76 (84%), Gaps = 1/76 (1%)
 Frame = +3

Query: 1029 NLE-LSKGFMGKMLVYKSGAVKLKLGEILYDVSPGSDCSFAQHVAAMNTTQKYFCELGEL 1205
            NLE L  G MGKMLVYKSGA+KLKLG+ILYDVSPG DCSF+Q V A+NT +K+ C+LGE+
Sbjct: 277  NLEKLPAGNMGKMLVYKSGAIKLKLGDILYDVSPGVDCSFSQDVVAINTVEKHCCQLGEI 336

Query: 1206 DKRAVVTPDIDSLLES 1253
             KRAVVTPD+D LL +
Sbjct: 337  GKRAVVTPDVDFLLNN 352


>XP_018820639.1 PREDICTED: uncharacterized protein LOC108990961 [Juglans regia]
          Length = 329

 Score =  145 bits (367), Expect(2) = 1e-56
 Identities = 89/231 (38%), Positives = 125/231 (54%), Gaps = 9/231 (3%)
 Frame = +1

Query: 271 MAGERDITPTRQIKFKPNKPSTRKIKPVSAK--IXXXXXXXXXXXXCPQHLIRRVNEHLS 444
           M  +   +  R++KF P  P  RK KP   K  +              Q+L+RR NE+L+
Sbjct: 1   MEQDESSSAPRKLKFAPKAPPRRKPKPTPPKTEVGDEEEEEEEEAEHAQYLLRRFNENLA 60

Query: 445 TGKSRADKKPT-QVAFGPA---PKVLRAFEKPSQVAGRSNSVSDSKDSAPGNGQNLLPLP 612
               + +KK + QVAFGP      ++R F       G  +S S  K S    G+ LL  P
Sbjct: 61  RRGPKDEKKSSVQVAFGPGVTPSPLIRKFGVSKDGIGGKSSGSCPKSS--DYGKALLSSP 118

Query: 613 YTA---GKDEAFATXXXXXXXXXXXYREPWDYENSCYPITLPLRRPNSGDPEILDEAEFG 783
             A   G+D   A            YREPWDY ++ YP T+PLRRP +GDPE+LDEAEFG
Sbjct: 119 SAANEDGRDVCSADPTSTEQIVKKEYREPWDYHSTYYPTTIPLRRPYAGDPELLDEAEFG 178

Query: 784 KATTNLDYDENSIDAASELGLREKMDQQRMFFFQLPSDLPSFRGNAAMRGK 936
           +A  N +YDEN+I  AS+LGL  + +++ MFFF+LP+ LP  + + + +GK
Sbjct: 179 EAAANSEYDENTISPASDLGLMAENEEENMFFFKLPASLPLLKRSTSRKGK 229



 Score =  104 bits (260), Expect(2) = 1e-56
 Identities = 51/74 (68%), Positives = 60/74 (81%)
 Frame = +3

Query: 1035 ELSKGFMGKMLVYKSGAVKLKLGEILYDVSPGSDCSFAQHVAAMNTTQKYFCELGELDKR 1214
            EL  G++GKMLVYKSGA+KLKLG  LYDV+PGSDC FAQ VAA+N  +K  C LGEL KR
Sbjct: 252  ELPGGYLGKMLVYKSGAIKLKLGNTLYDVTPGSDCVFAQDVAAINLAEKQCCVLGELGKR 311

Query: 1215 AVVTPDIDSLLESM 1256
            AVVT D+DSLL+ +
Sbjct: 312  AVVTLDVDSLLDGV 325


>XP_010035038.1 PREDICTED: DNA-directed RNA polymerase III subunit rpc4 [Eucalyptus
           grandis] KCW46307.1 hypothetical protein EUGRSUZ_K00171
           [Eucalyptus grandis]
          Length = 331

 Score =  135 bits (341), Expect(2) = 2e-55
 Identities = 89/230 (38%), Positives = 117/230 (50%), Gaps = 13/230 (5%)
 Frame = +1

Query: 286 DITPTRQIKFKPNKPSTRKIKP-VSAKIXXXXXXXXXXXXCP---QHLIRRVNEHLSTGK 453
           D   +R++KF P  P+ RK  P VS K                  Q L+RR NE+     
Sbjct: 2   DQNRSRKVKFTPKAPAPRKKPPTVSPKTEANGGDGGEEAAVEAEAQMLLRRFNENFGQQG 61

Query: 454 SRA-DKKPTQVAFGP----APKVLRAFEKPSQVAGRSNSVSDSKDSAPGNGQNLLPLPYT 618
           +R  +K   QVAFGP    +   +R F  P +           +  A   GQ + P P  
Sbjct: 62  ARVGNKSSVQVAFGPGAPSSASTIRTFGVPKEERSDQGCGPRLRSYAAAKGQTISP-PIV 120

Query: 619 AGKDEAFATXXXXXXXXXXX----YREPWDYENSCYPITLPLRRPNSGDPEILDEAEFGK 786
           A  D   AT               Y+EPWD+ +S YP TLPLR P SGDPEIL+E EFG+
Sbjct: 121 AETDATDATMEDATAEVPRKSKKEYKEPWDFHHSYYPTTLPLRMPYSGDPEILNEKEFGE 180

Query: 787 ATTNLDYDENSIDAASELGLREKMDQQRMFFFQLPSDLPSFRGNAAMRGK 936
           AT N +YDE  I+AAS+LGL E   + +M FFQLP +LPS R + +++GK
Sbjct: 181 ATRNFEYDEGIINAASDLGLLEDSGRGKMLFFQLPPNLPSVRRSTSVKGK 230



 Score =  110 bits (276), Expect(2) = 2e-55
 Identities = 51/71 (71%), Positives = 60/71 (84%)
 Frame = +3

Query: 1035 ELSKGFMGKMLVYKSGAVKLKLGEILYDVSPGSDCSFAQHVAAMNTTQKYFCELGELDKR 1214
            +LS G+MGK++VYKSGAVKLKLGE LYDVSPGSDC FAQ VA +NT  K+FC LGE+ KR
Sbjct: 252  DLSGGYMGKLVVYKSGAVKLKLGETLYDVSPGSDCIFAQDVAVVNTADKHFCSLGEVGKR 311

Query: 1215 AVVTPDIDSLL 1247
             ++TPD DSLL
Sbjct: 312  GIITPDFDSLL 322


>XP_002510979.1 PREDICTED: DNA-directed RNA polymerase III subunit rpc4 isoform X1
           [Ricinus communis] EEF51581.1 DNA binding protein,
           putative [Ricinus communis]
          Length = 328

 Score =  134 bits (338), Expect(2) = 3e-55
 Identities = 87/235 (37%), Positives = 121/235 (51%), Gaps = 6/235 (2%)
 Frame = +1

Query: 271 MAGERDITPTRQIKFKPNKPSTRKIKPVSAKIXXXXXXXXXXXXCP-QHLIRRVNEHLST 447
           M  E+     R++KF P  PS R+ +    K                Q L+R+ NE+   
Sbjct: 1   MDDEQPSPSQRKVKFTPKAPSQRRPRRTVPKTEVNGVDNNEDEAVQAQKLMRKFNENFRR 60

Query: 448 GKSRADKKPT-QVAFGPAPKVLRAFEKPSQVAGRSNSVSDSKDSAPGNGQNLLPLPYTAG 624
              R +KK T QVAFGP      +        G +   S  KDS   +G+ ++    T  
Sbjct: 61  QGPRVEKKSTVQVAFGPGATSSTSIRTFGVSKGENPVSSGIKDSTDDDGKIVISSLSTDK 120

Query: 625 KDE----AFATXXXXXXXXXXXYREPWDYENSCYPITLPLRRPNSGDPEILDEAEFGKAT 792
           +DE    A              YREPWDY+ + YP TLPLRRP SGDP +LDEAEFG+A 
Sbjct: 121 EDEIINCASEDIDALPLKIKKDYREPWDYDRTYYPTTLPLRRPYSGDPVLLDEAEFGEAA 180

Query: 793 TNLDYDENSIDAASELGLREKMDQQRMFFFQLPSDLPSFRGNAAMRGKTNEPARG 957
             L+YDE++++ AS+L L E+ D ++M FFQLP+ LP  + +A+ +GK  E A G
Sbjct: 181 RKLEYDESTMNPASDLELLEECDTEKMIFFQLPAKLPLVKRSASAKGK--EKAEG 233



 Score =  111 bits (277), Expect(2) = 3e-55
 Identities = 53/73 (72%), Positives = 63/73 (86%)
 Frame = +3

Query: 1038 LSKGFMGKMLVYKSGAVKLKLGEILYDVSPGSDCSFAQHVAAMNTTQKYFCELGELDKRA 1217
            LS G+MGKMLVY+SGAVKLKLG+ LYDVS GSDC FAQ V A+NT  K+ C +GEL+KRA
Sbjct: 252  LSAGYMGKMLVYRSGAVKLKLGDTLYDVSQGSDCMFAQDVMAINTAAKHCCTIGELEKRA 311

Query: 1218 VVTPDIDSLLESM 1256
            VVTPD+DSLL+S+
Sbjct: 312  VVTPDVDSLLDSV 324


>EOY22841.1 DNA binding protein, putative isoform 2 [Theobroma cacao]
          Length = 328

 Score =  130 bits (328), Expect(2) = 3e-55
 Identities = 85/236 (36%), Positives = 132/236 (55%), Gaps = 11/236 (4%)
 Frame = +1

Query: 301 RQIKFKPNKP-STRKIKPVSAKIXXXXXXXXXXXXCPQHLIRRVNEHLSTGKSRADKKPT 477
           R+++F P  P S+R++K   +K               Q+L+ R NE+ +  + + +KK +
Sbjct: 11  RKVRFAPKAPQSSRRLKTTVSKSEVNDEDGEAAQA--QYLLGRFNENQTRQRPKVEKKSS 68

Query: 478 -QVAFGP---APKVLRAFEKPSQVAGRSNSVSDSKDSAP--GNGQNLLPLPYTAGKDE-- 633
            Q++FGP   +  +LRA+   SQ  G S   +DS+  +P   +GQ +   P  + +D   
Sbjct: 69  AQISFGPGAPSSNLLRAYG--SQRGGTSGKSTDSRQRSPDDNDGQIIGSFPSASKEDRTD 126

Query: 634 --AFATXXXXXXXXXXXYREPWDYENSCYPITLPLRRPNSGDPEILDEAEFGKATTNLDY 807
             +              YREPWDY ++ YPITLPLRRP SGDPE+LD+AEF +A    +Y
Sbjct: 127 ICSSDAIEASAPKIKREYREPWDYHHTYYPITLPLRRPYSGDPELLDQAEFVEAARK-EY 185

Query: 808 DENSIDAASELGLREKMDQQRMFFFQLPSDLPSFRGNAAMRGKTNEPARGGQKLTG 975
           DE +I+ AS+LGL E+ ++ +MFFFQLP++LP  +  A+ +GK      G  +  G
Sbjct: 186 DEKTINPASDLGLLEEGEKGKMFFFQLPANLPVIKRLASTKGKEKAENLGSSERFG 241



 Score =  115 bits (287), Expect(2) = 3e-55
 Identities = 57/74 (77%), Positives = 63/74 (85%)
 Frame = +3

Query: 1035 ELSKGFMGKMLVYKSGAVKLKLGEILYDVSPGSDCSFAQHVAAMNTTQKYFCELGELDKR 1214
            EL  GFMGKMLVYKSGAVKLKLGE LYDVSPGSDC FAQ VAA+NTT+K+ C +GEL KR
Sbjct: 251  ELPGGFMGKMLVYKSGAVKLKLGETLYDVSPGSDCIFAQDVAAVNTTEKHCCVIGELGKR 310

Query: 1215 AVVTPDIDSLLESM 1256
             VVTPDI S+L S+
Sbjct: 311  VVVTPDISSVLNSV 324


>XP_012090466.1 PREDICTED: DNA-directed RNA polymerase III subunit rpc4 isoform X1
           [Jatropha curcas]
          Length = 350

 Score =  137 bits (346), Expect(2) = 2e-54
 Identities = 96/248 (38%), Positives = 128/248 (51%), Gaps = 9/248 (3%)
 Frame = +1

Query: 220 SLNFFFIFSDLQKPRISMAGERDITPTRQIKFKPNKPSTRKIKPVSAKIXXXXXXXXXXX 399
           S NF F  S        M  E+     R+ KF P  P  RK  P   K            
Sbjct: 7   SNNFLFSPSSFA----GMDQEQPSPTPRKAKFTPKAPPQRKPIPTVTKSEVNDSNNDEDE 62

Query: 400 XCP-QHLIRRVNEHLSTGKSRADKKPT-QVAFGP--APKV-LRAFEKPSQVAGRSNSVSD 564
               Q L+R+ NE+L     + +KK + QVAFGP  AP   +R +  P      S+S  D
Sbjct: 63  AAQAQKLMRKFNENLRRKVPKVEKKSSVQVAFGPGAAPSTSIRKYGVPGCENAGSSSRLD 122

Query: 565 SKDSAPGNGQNLLPLPYTAGKDEAFA----TXXXXXXXXXXXYREPWDYENSCYPITLPL 732
            KDS   + + ++    TA +D A                  YREPWDY ++ YP TLPL
Sbjct: 123 IKDSDNDDRRIVVSSLSTAEEDGASKYHSEAIGVLPLKIKKDYREPWDYNHTYYPTTLPL 182

Query: 733 RRPNSGDPEILDEAEFGKATTNLDYDENSIDAASELGLREKMDQQRMFFFQLPSDLPSFR 912
           RRP SGDPE+L+E EFG+A   L+Y+EN+I  AS+LGL E+ D++R+FFFQLPS LP  +
Sbjct: 183 RRPYSGDPELLNEEEFGEAARKLEYNENTIKPASDLGLLEESDKERLFFFQLPSKLPLVK 242

Query: 913 GNAAMRGK 936
            +A  +GK
Sbjct: 243 RSAITKGK 250



 Score =  105 bits (261), Expect(2) = 2e-54
 Identities = 49/73 (67%), Positives = 62/73 (84%)
 Frame = +3

Query: 1038 LSKGFMGKMLVYKSGAVKLKLGEILYDVSPGSDCSFAQHVAAMNTTQKYFCELGELDKRA 1217
            LS+G+MGKMLVY+SGAVK+KLG+ LYDVSPGSDC+FAQ + A++   K  C +G+L KRA
Sbjct: 274  LSEGYMGKMLVYRSGAVKIKLGDTLYDVSPGSDCTFAQDLMAIDIASKQCCTIGKLRKRA 333

Query: 1218 VVTPDIDSLLESM 1256
            VVTPD+DSLL S+
Sbjct: 334  VVTPDVDSLLNSV 346


>KDP22444.1 hypothetical protein JCGZ_26275 [Jatropha curcas]
          Length = 331

 Score =  137 bits (345), Expect(2) = 3e-54
 Identities = 91/225 (40%), Positives = 123/225 (54%), Gaps = 10/225 (4%)
 Frame = +1

Query: 292 TPT-RQIKFKPNKPSTRKIKPVSAKIXXXXXXXXXXXXCP-QHLIRRVNEHLSTGKSRAD 465
           +PT R+ KF P  P  RK  P   K                Q L+R+ NE+L     + +
Sbjct: 7   SPTPRKAKFTPKAPPQRKPIPTVTKSEVNDSNNDEDEAAQAQKLMRKFNENLRRKVPKVE 66

Query: 466 KKPT-QVAFGP--APKV-LRAFEKPSQVAGRSNSVSDSKDSAPGNGQNLLPLPYTAGKDE 633
           KK + QVAFGP  AP   +R +  P      S+S  D KDS   + + ++    TA +D 
Sbjct: 67  KKSSVQVAFGPGAAPSTSIRKYGVPGCENAGSSSRLDIKDSDNDDRRIVVSSLSTAEEDG 126

Query: 634 AFA----TXXXXXXXXXXXYREPWDYENSCYPITLPLRRPNSGDPEILDEAEFGKATTNL 801
           A                  YREPWDY ++ YP TLPLRRP SGDPE+L+E EFG+A   L
Sbjct: 127 ASKYHSEAIGVLPLKIKKDYREPWDYNHTYYPTTLPLRRPYSGDPELLNEEEFGEAARKL 186

Query: 802 DYDENSIDAASELGLREKMDQQRMFFFQLPSDLPSFRGNAAMRGK 936
           +Y+EN+I  AS+LGL E+ D++R+FFFQLPS LP  + +A  +GK
Sbjct: 187 EYNENTIKPASDLGLLEESDKERLFFFQLPSKLPLVKRSAITKGK 231



 Score =  105 bits (261), Expect(2) = 3e-54
 Identities = 49/73 (67%), Positives = 62/73 (84%)
 Frame = +3

Query: 1038 LSKGFMGKMLVYKSGAVKLKLGEILYDVSPGSDCSFAQHVAAMNTTQKYFCELGELDKRA 1217
            LS+G+MGKMLVY+SGAVK+KLG+ LYDVSPGSDC+FAQ + A++   K  C +G+L KRA
Sbjct: 255  LSEGYMGKMLVYRSGAVKIKLGDTLYDVSPGSDCTFAQDLMAIDIASKQCCTIGKLRKRA 314

Query: 1218 VVTPDIDSLLESM 1256
            VVTPD+DSLL S+
Sbjct: 315  VVTPDVDSLLNSV 327


>XP_007038340.2 PREDICTED: DNA-directed RNA polymerase III subunit rpc4 isoform X4
           [Theobroma cacao]
          Length = 328

 Score =  129 bits (324), Expect(2) = 5e-54
 Identities = 84/234 (35%), Positives = 128/234 (54%), Gaps = 9/234 (3%)
 Frame = +1

Query: 301 RQIKFKPNKP-STRKIKPVSAKIXXXXXXXXXXXXCPQHLIRRVNEHLSTGKSRADKKPT 477
           R+++F P  P S+R++K   +K               Q+L+ R NE+ +  + + +KK +
Sbjct: 11  RKVRFAPKAPQSSRRLKTTVSKSEVNDEDGEAAQA--QYLLGRFNENQTRQRPKVEKKSS 68

Query: 478 -QVAFGP-APKVLRAFEKPSQVAGRSNSVSDSKDSAP--GNGQNLLPLPYTAGKDE---- 633
            Q++FGP AP         SQ  G S   +DS+  +P   +GQ +   P  + +D     
Sbjct: 69  AQISFGPGAPSSNLLSAYGSQRGGTSGKSTDSRQRSPDDNDGQIIGSFPSASKEDRTDIC 128

Query: 634 AFATXXXXXXXXXXXYREPWDYENSCYPITLPLRRPNSGDPEILDEAEFGKATTNLDYDE 813
           +              YREPWDY ++ YPITLPLRRP SGDPE+LD+AEF +A    +YDE
Sbjct: 129 SSDAIEASAPKIKREYREPWDYHHTYYPITLPLRRPYSGDPELLDQAEFVEAARK-EYDE 187

Query: 814 NSIDAASELGLREKMDQQRMFFFQLPSDLPSFRGNAAMRGKTNEPARGGQKLTG 975
            +I+ AS+LGL E+ ++ +MFFFQLP++LP  +  A+ +GK      G  +  G
Sbjct: 188 KTINPASDLGLLEEGEKGKMFFFQLPANLPVIKRLASTKGKEKAENLGSSERFG 241



 Score =  112 bits (280), Expect(2) = 5e-54
 Identities = 56/74 (75%), Positives = 62/74 (83%)
 Frame = +3

Query: 1035 ELSKGFMGKMLVYKSGAVKLKLGEILYDVSPGSDCSFAQHVAAMNTTQKYFCELGELDKR 1214
            EL  GFMGKMLVYKSGAVKLKLGE LYDVSPGSDC FAQ VAA+NTT+K+ C +GEL KR
Sbjct: 251  ELPGGFMGKMLVYKSGAVKLKLGETLYDVSPGSDCIFAQDVAAVNTTEKHCCVIGELGKR 310

Query: 1215 AVVTPDIDSLLESM 1256
             VVTP I S+L S+
Sbjct: 311  VVVTPHISSVLNSV 324


>XP_017973633.1 PREDICTED: DNA-directed RNA polymerase III subunit rpc4 isoform X5
           [Theobroma cacao]
          Length = 327

 Score =  124 bits (312), Expect(2) = 1e-52
 Identities = 84/234 (35%), Positives = 127/234 (54%), Gaps = 9/234 (3%)
 Frame = +1

Query: 301 RQIKFKPNKP-STRKIKPVSAKIXXXXXXXXXXXXCPQHLIRRVNEHLSTGKSRADKKPT 477
           R+++F P  P S+R++K   +K               Q+L+ R NE+ +  + + +KK +
Sbjct: 11  RKVRFAPKAPQSSRRLKTTVSKSEVNDEDGEAAQA--QYLLGRFNENQTRQRPKVEKKSS 68

Query: 478 -QVAFGP-APKVLRAFEKPSQVAGRSNSVSDSKDSAP--GNGQNLLPLPYTAGKDE---- 633
            Q++FGP AP         SQ  G S   +DS+  +P   +GQ +   P  + +D     
Sbjct: 69  AQISFGPGAPSSNLLSAYGSQRGGTSGKSTDSRQRSPDDNDGQIIGSFPSASKEDRTDIC 128

Query: 634 AFATXXXXXXXXXXXYREPWDYENSCYPITLPLRRPNSGDPEILDEAEFGKATTNLDYDE 813
           +              YREPWDY ++ YPITLPLRRP SGDPE+LD+AEF +A    +YDE
Sbjct: 129 SSDAIEASAPKIKREYREPWDYHHTYYPITLPLRRPYSGDPELLDQAEFVEAARK-EYDE 187

Query: 814 NSIDAASELGLREKMDQQRMFFFQLPSDLPSFRGNAAMRGKTNEPARGGQKLTG 975
            +I+ AS+LGL E  ++ +MFFFQLP++LP  +  A+ +GK      G  +  G
Sbjct: 188 KTINPASDLGLLEG-EKGKMFFFQLPANLPVIKRLASTKGKEKAENLGSSERFG 240



 Score =  112 bits (280), Expect(2) = 1e-52
 Identities = 56/74 (75%), Positives = 62/74 (83%)
 Frame = +3

Query: 1035 ELSKGFMGKMLVYKSGAVKLKLGEILYDVSPGSDCSFAQHVAAMNTTQKYFCELGELDKR 1214
            EL  GFMGKMLVYKSGAVKLKLGE LYDVSPGSDC FAQ VAA+NTT+K+ C +GEL KR
Sbjct: 250  ELPGGFMGKMLVYKSGAVKLKLGETLYDVSPGSDCIFAQDVAAVNTTEKHCCVIGELGKR 309

Query: 1215 AVVTPDIDSLLESM 1256
             VVTP I S+L S+
Sbjct: 310  VVVTPHISSVLNSV 323


>XP_002303490.2 hypothetical protein POPTR_0003s10650g [Populus trichocarpa]
           EEE78469.2 hypothetical protein POPTR_0003s10650g
           [Populus trichocarpa]
          Length = 368

 Score =  130 bits (326), Expect(2) = 5e-52
 Identities = 84/223 (37%), Positives = 120/223 (53%), Gaps = 8/223 (3%)
 Frame = +1

Query: 292 TPTR-QIKFKPNKP--STRKIKPVSAKIXXXXXXXXXXXXCP-QHLIRRVNEHLSTGKSR 459
           +P+R ++KFKP  P    R   P + +I               Q LI + NE+L     +
Sbjct: 52  SPSRTKLKFKPKLPRRQRRPSVPKTEEINDDRRSNEDEEAAQAQMLIHKFNENLRRQVPK 111

Query: 460 ADKKPTQVAFGPA----PKVLRAFEKPSQVAGRSNSVSDSKDSAPGNGQNLLPLPYTAGK 627
             K   QVAFGP     P ++R +  P       +S S ++D+   +G+  +P P  A  
Sbjct: 112 EKKPQVQVAFGPGAPSPPLLIRKYNVPVH-ENTGSSWSGTEDTRDDDGKIFVP-PSAARV 169

Query: 628 DEAFATXXXXXXXXXXXYREPWDYENSCYPITLPLRRPNSGDPEILDEAEFGKATTNLDY 807
           D A              Y+EPWDY +  YP TLPLR P SGDP++LDEAEFG+   NL+Y
Sbjct: 170 DGAI---NPLSLKGKRRYKEPWDYHHIYYPNTLPLRPPYSGDPKLLDEAEFGEEARNLEY 226

Query: 808 DENSIDAASELGLREKMDQQRMFFFQLPSDLPSFRGNAAMRGK 936
           DE +I+ AS+LGL E+ D +R+FFFQ+P  LP  + +A+ +GK
Sbjct: 227 DETTINPASDLGLLEECDNERLFFFQVPEKLPFLKRSASAKGK 269



 Score =  105 bits (261), Expect(2) = 5e-52
 Identities = 51/74 (68%), Positives = 61/74 (82%)
 Frame = +3

Query: 1035 ELSKGFMGKMLVYKSGAVKLKLGEILYDVSPGSDCSFAQHVAAMNTTQKYFCELGELDKR 1214
            EL KG+MGKMLVY+SGA+KLKLG+ LYDVSPGS+C+FAQ V A+NT  K  C +GEL KR
Sbjct: 291  ELPKGYMGKMLVYRSGAIKLKLGDALYDVSPGSECTFAQDVMAINTAGKDCCAIGELGKR 350

Query: 1215 AVVTPDIDSLLESM 1256
            AVVTPDI+  L S+
Sbjct: 351  AVVTPDIEFNLNSV 364


>OMO94871.1 RNA polymerase III Rpc4 [Corchorus capsularis]
          Length = 327

 Score =  125 bits (315), Expect(2) = 5e-52
 Identities = 83/229 (36%), Positives = 124/229 (54%), Gaps = 9/229 (3%)
 Frame = +1

Query: 277 GERDITPTRQ-IKFKPNKPSTRKIKPVSAKIXXXXXXXXXXXXCPQHLIRRVNEHLSTGK 453
           G+ +++P R+ ++F P  P   KI    ++               Q L+ R NE+ +  K
Sbjct: 2   GQDELSPARRKVRFAPKAPQKPKITVPKSEATNDFEDKEAARA--QFLLGRFNENQTRQK 59

Query: 454 SRADKKPT-QVAFGP-APK--VLRAFEKPSQVAGRSNSVSDSKDSAPGNGQNLLPLPYTA 621
            + +KK + Q+AFGP AP   +LR +   S      N+    +     +GQ +  LP T+
Sbjct: 60  PKVEKKSSAQIAFGPGAPSRTLLRTYGTRSGETSDRNATPIHRSPDDNDGQIVCYLPSTS 119

Query: 622 GKDEA----FATXXXXXXXXXXXYREPWDYENSCYPITLPLRRPNSGDPEILDEAEFGKA 789
            +D                    YREPWDY +S YPITLPLRRP SGDPE+LD+AEF +A
Sbjct: 120 KEDMMDICPLDASEASAQKIKREYREPWDYNHSYYPITLPLRRPYSGDPELLDQAEFVEA 179

Query: 790 TTNLDYDENSIDAASELGLREKMDQQRMFFFQLPSDLPSFRGNAAMRGK 936
               +Y+EN+I+ AS+LGL E+ +  +MF FQLP++LP  +  A+ +GK
Sbjct: 180 -AGKEYNENTINPASDLGLLEEGETGKMFLFQLPANLPMVKRPASTKGK 227



 Score =  109 bits (272), Expect(2) = 5e-52
 Identities = 52/74 (70%), Positives = 63/74 (85%)
 Frame = +3

Query: 1035 ELSKGFMGKMLVYKSGAVKLKLGEILYDVSPGSDCSFAQHVAAMNTTQKYFCELGELDKR 1214
            EL  G+MGKMLVYKSGAVKLKLGE+LY VSPGSDC+FAQ VA +NT +K+ C +GEL KR
Sbjct: 250  ELQGGYMGKMLVYKSGAVKLKLGEMLYHVSPGSDCAFAQDVAVVNTAKKHCCMIGELGKR 309

Query: 1215 AVVTPDIDSLLESM 1256
             VV PDID++L+S+
Sbjct: 310  VVVEPDIDTVLDSV 323


>XP_011027962.1 PREDICTED: DNA-directed RNA polymerase III subunit rpc4-like
           [Populus euphratica]
          Length = 325

 Score =  130 bits (328), Expect(2) = 8e-52
 Identities = 83/222 (37%), Positives = 118/222 (53%), Gaps = 7/222 (3%)
 Frame = +1

Query: 292 TPTRQIKFKPNKP--STRKIKPVSAKIXXXXXXXXXXXXCP-QHLIRRVNEHLSTGKSRA 462
           T   ++KFKP  P    R   P + +I               Q LI++ NE+L     + 
Sbjct: 10  TSRTKLKFKPKLPRRQRRPSVPKTEEINDERRSNEDEEAAQAQMLIQKFNENLRRQVPKE 69

Query: 463 DKKPTQVAFGPA----PKVLRAFEKPSQVAGRSNSVSDSKDSAPGNGQNLLPLPYTAGKD 630
            K   QVAFGP     P ++R +  P       +S S ++D+   +G+  +P P  A  D
Sbjct: 70  KKPQVQVAFGPGAPSPPLLIRKYNVPVH-ENTGSSWSGTEDTRDDDGKIFVP-PSAARVD 127

Query: 631 EAFATXXXXXXXXXXXYREPWDYENSCYPITLPLRRPNSGDPEILDEAEFGKATTNLDYD 810
            A              Y+EPWDY +  YP TLPLR P SGDP++LDEAEFG+   NL+YD
Sbjct: 128 GAI---NPLSLKGKRRYKEPWDYHHIYYPSTLPLRPPYSGDPKLLDEAEFGEEARNLEYD 184

Query: 811 ENSIDAASELGLREKMDQQRMFFFQLPSDLPSFRGNAAMRGK 936
           E +I+ AS+LGL E+ D +R+FFFQ+P  LP  + +A+ +GK
Sbjct: 185 ETTINPASDLGLLEECDNERLFFFQVPEKLPFLKRSASAKGK 226



 Score =  103 bits (257), Expect(2) = 8e-52
 Identities = 50/74 (67%), Positives = 60/74 (81%)
 Frame = +3

Query: 1035 ELSKGFMGKMLVYKSGAVKLKLGEILYDVSPGSDCSFAQHVAAMNTTQKYFCELGELDKR 1214
            EL KG+MGKMLVY+SGA+KLKLG+ LYDVSPGS+C FAQ V A+NT  K  C +GEL KR
Sbjct: 248  ELPKGYMGKMLVYRSGAIKLKLGDALYDVSPGSECIFAQDVMAINTAGKDCCAIGELGKR 307

Query: 1215 AVVTPDIDSLLESM 1256
            AVVTPD++  L S+
Sbjct: 308  AVVTPDVEFNLNSV 321