BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum23_contig00009975
         (1509 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CDO97224.1 unnamed protein product [Coffea canephora]                 510   e-175
XP_019225818.1 PREDICTED: RNA pseudouridine synthase 4, mitochon...   507   e-174
XP_009805027.1 PREDICTED: RNA pseudouridine synthase 4, mitochon...   499   e-170
XP_009629272.1 PREDICTED: RNA pseudouridine synthase 4, mitochon...   493   e-169
XP_006346360.2 PREDICTED: RNA pseudouridine synthase 4, mitochon...   494   e-169
XP_015063320.1 PREDICTED: RNA pseudouridine synthase 4, mitochon...   493   e-168
XP_004230733.2 PREDICTED: RNA pseudouridine synthase 4, mitochon...   493   e-168
XP_016582015.1 PREDICTED: RNA pseudouridine synthase 4, mitochon...   491   e-168
XP_009805028.1 PREDICTED: RNA pseudouridine synthase 4, mitochon...   483   e-164
XP_002282614.1 PREDICTED: RNA pseudouridine synthase 4, mitochon...   481   e-164
XP_012075891.1 PREDICTED: RNA pseudouridine synthase 4, mitochon...   481   e-164
OAY45543.1 hypothetical protein MANES_07G069900 [Manihot esculenta]   479   e-163
XP_018634268.1 PREDICTED: RNA pseudouridine synthase 4, mitochon...   475   e-162
XP_002313876.2 hypothetical protein POPTR_0009s09860g [Populus t...   476   e-162
XP_011001179.1 PREDICTED: RNA pseudouridine synthase 4, mitochon...   471   e-160
XP_011092538.1 PREDICTED: RNA pseudouridine synthase 4, mitochon...   468   e-159
XP_017639587.1 PREDICTED: RNA pseudouridine synthase 4, mitochon...   469   e-159
XP_012450617.1 PREDICTED: RNA pseudouridine synthase 4, mitochon...   468   e-158
XP_008236380.1 PREDICTED: RNA pseudouridine synthase 4, mitochon...   468   e-158
XP_016722007.1 PREDICTED: RNA pseudouridine synthase 4, mitochon...   468   e-158

>CDO97224.1 unnamed protein product [Coffea canephora]
          Length = 477

 Score =  510 bits (1314), Expect = e-175
 Identities = 254/421 (60%), Positives = 319/421 (75%), Gaps = 13/421 (3%)
 Frame = +2

Query: 86   KEEGWYRLPEFRLSIDGASVGKAIAN----------SNNITTNPSAIKWVFRCCPELPTS 235
            K+  WY LP F  S+DGA++GK IA+              T+  +A+KWV RCCPELP S
Sbjct: 58   KKGNWYALPPFTPSVDGAALGKTIAHRQTEKKHKASDTTSTSTMTALKWVTRCCPELPRS 117

Query: 236  LVHKLFRLRQVRKQSCHFHLDNPKLNRVAAKDSLEVGDRIFLPISVQKILPLEPKVLVFN 415
            LV KLFRLRQVR+ S +  +   +L RVAAKD +  GDRI LP+S+QK+ P       F+
Sbjct: 118  LVQKLFRLRQVRRDSYNVEVRQRQLKRVAAKDLMNSGDRIVLPVSIQKV-PSAKTDSTFS 176

Query: 416  DEEMKFIRSLLLYKDSAVIVINKPPGLPVQGGIGIKKSIDNLATKYLKYEYQDSPRLVHR 595
            +EEMKF+ S++L+KD AVIV+NKPPG+PVQGGIGIK+S+D LA KYL+++  +SPRLVHR
Sbjct: 177  EEEMKFLHSMVLFKDPAVIVVNKPPGMPVQGGIGIKRSLDELAAKYLRFDDSESPRLVHR 236

Query: 596  LDRDCSGVLVMGRTQLTASALHSIFREKTSALSNGDINHKKQIIQKKYWALVIGSPRRDK 775
            LDRDCSG+LVMGRTQL+A+ LHSIFREKT   S  D++ K++I++K YWALVIGSPRR K
Sbjct: 237  LDRDCSGILVMGRTQLSATTLHSIFREKTLEASEYDLDSKRRIVRKTYWALVIGSPRRSK 296

Query: 776  GLISAPLGKVIVGDGKSELIQIRDNIESSGAQYAVTEYRVIGSSNHGFTWLELCPLTGRK 955
            G+IS PLGKV+V +GKS+ I + D+++SS AQYAVTEY VIGSS HG++WLEL PLTGRK
Sbjct: 297  GIISKPLGKVVVDNGKSDRITVLDDVQSSLAQYAVTEYEVIGSSCHGYSWLELSPLTGRK 356

Query: 956  HQLRVHCAEFLGTPIVGDFKYGWQAHRNLEHLSCIARSVSQQDKSPKPVIDPFDLDLESG 1135
            HQLRVHCAE LGTPIVGD+KYGWQAHRNL++    A +    +  P+  +DPF L+L +G
Sbjct: 357  HQLRVHCAEVLGTPIVGDYKYGWQAHRNLKNPGPSALTRDHNEGLPEEGLDPFSLNLGNG 416

Query: 1136 SLSDKQWRLHLHCKEMVLPNIHATLQHAKMITDCSFEE---LKFEAPLPSHMQQSWDIFH 1306
            S+ DKQ RLHLHC+EMVLPNI   LQ AK ITD   E+   +KF+APLPSHMQ+SW+   
Sbjct: 417  SILDKQPRLHLHCREMVLPNISLALQRAKSITDLDLEDVKTIKFDAPLPSHMQKSWNALG 476

Query: 1307 S 1309
            S
Sbjct: 477  S 477


>XP_019225818.1 PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Nicotiana
            attenuata] OIT32415.1 rna uridine synthase 4,
            mitochondrial [Nicotiana attenuata]
          Length = 464

 Score =  507 bits (1306), Expect = e-174
 Identities = 251/413 (60%), Positives = 309/413 (74%), Gaps = 5/413 (1%)
 Frame = +2

Query: 86   KEEGWYRLPEFRLSIDGASVGKAIAN--SNNITTNPSAIKWVFRCCPELPTSLVHKLFRL 259
            K+  W+ LP F  +++GA++GK +A    +  T   +A+KWV RCCPELP SLV KLFRL
Sbjct: 54   KKGKWFTLPPFTPTVNGAALGKELAGVKMDKSTNTMTALKWVQRCCPELPQSLVQKLFRL 113

Query: 260  RQVRKQSCHFHLDNPKLNRVAAKDSLEVGDRIFLPISVQKILPLEPKVLVFNDEEMKFIR 439
            RQVR++S       PK  RVAAK+S+ +GDRIFLPI+VQK    +      ++EEMKF+ 
Sbjct: 114  RQVRRESSDVEEQRPK--RVAAKESMNIGDRIFLPITVQKFPSDKVTDYPSSEEEMKFLH 171

Query: 440  SLLLYKDSAVIVINKPPGLPVQGGIGIKKSIDNLATKYLKYEYQDSPRLVHRLDRDCSGV 619
            SL LYKD  +IV+NKPPGLPVQGGIGIK+S+D LA KY+KYEY ++PRLVHRLDRDCSG+
Sbjct: 172  SLELYKDPEIIVLNKPPGLPVQGGIGIKRSLDELAAKYMKYEYSEAPRLVHRLDRDCSGI 231

Query: 620  LVMGRTQLTASALHSIFREKTSALSNGDINHKKQIIQKKYWALVIGSPRRDKGLISAPLG 799
            LVMGRTQL+AS LHS+FREKT      D+  KK+++QK+YWALVIG PRR KGLIS PLG
Sbjct: 232  LVMGRTQLSASVLHSVFREKTFGTQTEDLESKKRVLQKRYWALVIGCPRRSKGLISVPLG 291

Query: 800  KVIVGDGKSELIQIRDNIESSGAQYAVTEYRVIGSSNHGFTWLELCPLTGRKHQLRVHCA 979
            KV++ +GKSE I I  ++    AQ+AVTEYR+IGSS  G+TWLEL PLTGRKHQLRVHCA
Sbjct: 292  KVVLDNGKSERITIMSDVREPSAQFAVTEYRIIGSSEKGYTWLELSPLTGRKHQLRVHCA 351

Query: 980  EFLGTPIVGDFKYGWQAHRNLEHLSCIARSVSQQDKSPKPVIDPFDLDLESGSLSDKQWR 1159
            E LGTPIVGD+KYGWQAHR L+HLS     V+   + P+  +DPF L L +GS+SDKQ  
Sbjct: 352  EVLGTPIVGDYKYGWQAHRKLKHLSSSTSIVNLGARIPEQEVDPFSLRLGNGSISDKQPH 411

Query: 1160 LHLHCKEMVLPNIHATLQHAKMITDCSF---EELKFEAPLPSHMQQSWDIFHS 1309
            LHLHCKEMVLPNI   LQ A++++D      E +K  APLPSHMQ+SWD   S
Sbjct: 412  LHLHCKEMVLPNISLALQQARVVSDADLVDVESIKLVAPLPSHMQKSWDCLSS 464


>XP_009805027.1 PREDICTED: RNA pseudouridine synthase 4, mitochondrial isoform X1
            [Nicotiana sylvestris] XP_016460520.1 PREDICTED: RNA
            pseudouridine synthase 4, mitochondrial-like isoform X1
            [Nicotiana tabacum]
          Length = 496

 Score =  499 bits (1285), Expect = e-170
 Identities = 248/413 (60%), Positives = 306/413 (74%), Gaps = 5/413 (1%)
 Frame = +2

Query: 86   KEEGWYRLPEFRLSIDGASVGKAIAN--SNNITTNPSAIKWVFRCCPELPTSLVHKLFRL 259
            K+  W+ LP F  +++GA++GK +A    +  T   +A+KWV RCCPELP SLV KLFRL
Sbjct: 86   KKGKWFTLPPFTATVNGAALGKELAGVKMDKSTNTMTALKWVQRCCPELPQSLVQKLFRL 145

Query: 260  RQVRKQSCHFHLDNPKLNRVAAKDSLEVGDRIFLPISVQKILPLEPKVLVFNDEEMKFIR 439
            RQVR++S       PK  RVAAK+S+ +GDRIFLPI+VQK    + +    ++EEMKF+ 
Sbjct: 146  RQVRRESSDVEEQRPK--RVAAKESMNIGDRIFLPITVQKFPSDKVEDYPSSEEEMKFLH 203

Query: 440  SLLLYKDSAVIVINKPPGLPVQGGIGIKKSIDNLATKYLKYEYQDSPRLVHRLDRDCSGV 619
            SL LYKD  +IV+NKPPGLPVQGGIGIK+S+D LA KY+KYEY ++PRLVHRLDRDCSG+
Sbjct: 204  SLELYKDPEIIVLNKPPGLPVQGGIGIKRSLDELAAKYMKYEYSEAPRLVHRLDRDCSGI 263

Query: 620  LVMGRTQLTASALHSIFREKTSALSNGDINHKKQIIQKKYWALVIGSPRRDKGLISAPLG 799
            LVMGRTQL+AS LHS+FREKT      D+  KK+++QK+YWALVIG PRR KGLIS PLG
Sbjct: 264  LVMGRTQLSASVLHSVFREKTFGTQTEDLESKKRVLQKRYWALVIGCPRRSKGLISVPLG 323

Query: 800  KVIVGDGKSELIQIRDNIESSGAQYAVTEYRVIGSSNHGFTWLELCPLTGRKHQLRVHCA 979
            KV++ +GKSE I I  ++    AQ+AVTEYR+IGSS  G+TWLEL PLTGRKHQLRVHCA
Sbjct: 324  KVVLDNGKSERITIMSDVREPSAQFAVTEYRIIGSSEKGYTWLELSPLTGRKHQLRVHCA 383

Query: 980  EFLGTPIVGDFKYGWQAHRNLEHLSCIARSVSQQDKSPKPVIDPFDLDLESGSLSDKQWR 1159
            E LGTPIVGD+KYGWQAHR L+HLS     V+   +  +   DPF L L +GS+SDKQ  
Sbjct: 384  EVLGTPIVGDYKYGWQAHRKLKHLSSSTSIVNLGARILEQEADPFSLRLGNGSISDKQPH 443

Query: 1160 LHLHCKEMVLPNIHATLQHAKMITDCSF---EELKFEAPLPSHMQQSWDIFHS 1309
            LHLHCKEMVLPN    LQ A++++       E +K  APLPSHMQ+SWD   S
Sbjct: 444  LHLHCKEMVLPNFSLALQQARVVSGADLVHVESIKLVAPLPSHMQKSWDCLSS 496


>XP_009629272.1 PREDICTED: RNA pseudouridine synthase 4, mitochondrial isoform X1
            [Nicotiana tomentosiformis]
          Length = 464

 Score =  493 bits (1270), Expect = e-169
 Identities = 244/409 (59%), Positives = 304/409 (74%), Gaps = 5/409 (1%)
 Frame = +2

Query: 86   KEEGWYRLPEFRLSIDGASVGKAIAN--SNNITTNPSAIKWVFRCCPELPTSLVHKLFRL 259
            K+  W+ LP F  +++GA++GK +A       T   +A+KWV RCCPELP SLV KLFRL
Sbjct: 54   KKGKWFTLPPFNPTVNGAALGKELAGVKMGKSTNTLTALKWVQRCCPELPQSLVQKLFRL 113

Query: 260  RQVRKQSCHFHLDNPKLNRVAAKDSLEVGDRIFLPISVQKILPLEPKVLVFNDEEMKFIR 439
            RQVR++S    +  PK  RVAAK+ + +GDRIFLPI+VQK    +      ++EEMKF+ 
Sbjct: 114  RQVRRESSDVEVQRPK--RVAAKEPMNIGDRIFLPITVQKFPSDKVTDYPSSEEEMKFLH 171

Query: 440  SLLLYKDSAVIVINKPPGLPVQGGIGIKKSIDNLATKYLKYEYQDSPRLVHRLDRDCSGV 619
            SL LYKD  +IV+NKPPGLPVQGGIGIK+S+D LA KY+K+EY ++PRLVHRLDRDCSG+
Sbjct: 172  SLELYKDPEIIVLNKPPGLPVQGGIGIKRSLDELAAKYMKFEYSEAPRLVHRLDRDCSGI 231

Query: 620  LVMGRTQLTASALHSIFREKTSALSNGDINHKKQIIQKKYWALVIGSPRRDKGLISAPLG 799
            LVMGRTQL+AS LHS+FREKT      D+  KK+++QK+YWALVIG PRR KG+IS PL 
Sbjct: 232  LVMGRTQLSASVLHSVFREKTFGTQTEDLESKKRVLQKRYWALVIGCPRRSKGVISVPLA 291

Query: 800  KVIVGDGKSELIQIRDNIESSGAQYAVTEYRVIGSSNHGFTWLELCPLTGRKHQLRVHCA 979
            KV++ +GKSE I I  ++    AQ+AVTEYR+IGSS  G+TWLEL PLTGRKHQLRVHCA
Sbjct: 292  KVVLDNGKSERITIMSDVREPSAQFAVTEYRIIGSSEKGYTWLELSPLTGRKHQLRVHCA 351

Query: 980  EFLGTPIVGDFKYGWQAHRNLEHLSCIARSVSQQDKSPKPVIDPFDLDLESGSLSDKQWR 1159
            E LGTPIVGD+KYGWQAHR L+HLS    +V+   + P+   DPF L L +GS+SDKQ  
Sbjct: 352  EVLGTPIVGDYKYGWQAHRKLKHLSSSISTVNLGARIPEQEADPFSLCLGNGSISDKQPH 411

Query: 1160 LHLHCKEMVLPNIHATLQHAKMITDCSF---EELKFEAPLPSHMQQSWD 1297
            LHLHCKEMVLPNI   LQ A++++       E +K  A LPSHMQ+SWD
Sbjct: 412  LHLHCKEMVLPNISLALQQARVVSGADLIDVESIKLVAHLPSHMQKSWD 460


>XP_006346360.2 PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Solanum
            tuberosum]
          Length = 478

 Score =  494 bits (1271), Expect = e-169
 Identities = 250/414 (60%), Positives = 311/414 (75%), Gaps = 10/414 (2%)
 Frame = +2

Query: 98   WYRLPEFRLSIDGASVGKAIAN-----SNNITTNPSAIKWVFRCCPELPTSLVHKLFRLR 262
            W  LP F  +++GA++G+ +A        N T   +A+KWV RCCPELP SLV KLFRLR
Sbjct: 69   WLTLPPFTATVNGAALGRELAGVKMDVKENSTNTMTALKWVQRCCPELPKSLVQKLFRLR 128

Query: 263  QVRKQSCHFHLDNPKLNRVAAKDSLEVGDRIFLPISVQKILPLEPKVLVF--NDEEMKFI 436
            QVR+ S +     PK  RV+AK+S+ VGDRIFLPI+VQK  P E KV+ +  ++EE KF+
Sbjct: 129  QVRRDSSNVEEQRPK--RVSAKESMNVGDRIFLPITVQKF-PSE-KVVYYPSSEEERKFV 184

Query: 437  RSLLLYKDSAVIVINKPPGLPVQGGIGIKKSIDNLATKYLKYEYQDSPRLVHRLDRDCSG 616
             SL LYKD  ++V+NKPPG+PVQGGIGIK+S+D LA KY+++EY ++PRLVHRLDRDCSG
Sbjct: 185  HSLELYKDPEIVVVNKPPGMPVQGGIGIKRSLDELAAKYMRHEYSEAPRLVHRLDRDCSG 244

Query: 617  VLVMGRTQLTASALHSIFREKTSALSNGDINHKKQIIQKKYWALVIGSPRRDKGLISAPL 796
            +LVMGRTQL+ASALHSIFREKT    N D+  KK+I+QKKYWALVIG PRR  G+ISAPL
Sbjct: 245  LLVMGRTQLSASALHSIFREKTFDSQNEDLESKKRILQKKYWALVIGCPRRSGGIISAPL 304

Query: 797  GKVIVGDGKSELIQIRDNIESSGAQYAVTEYRVIGSSNHGFTWLELCPLTGRKHQLRVHC 976
            GK+++ +GKSE I I  ++ +  AQYAVTEYR+IGSS  G+TWLEL PLTGRKHQLRVHC
Sbjct: 305  GKLVLDNGKSERITIMSDVRAPSAQYAVTEYRIIGSSEKGYTWLELSPLTGRKHQLRVHC 364

Query: 977  AEFLGTPIVGDFKYGWQAHRNLEHLSCIARSVSQQDKSPKPVIDPFDLDLESGSLSDKQW 1156
            AE LGTPIVGD+KYGWQAHR L+HL      ++   + P+   DPF+L L +GS+SDKQ 
Sbjct: 365  AEALGTPIVGDYKYGWQAHRKLKHLPLPTSVLNLGVQIPRQKPDPFNLRLGNGSISDKQP 424

Query: 1157 RLHLHCKEMVLPNIHATLQHAKMITDCSF---EELKFEAPLPSHMQQSWDIFHS 1309
             LHLHCKEMVLPNI   LQ A++++D      E +K  APLP HMQ+SWD   S
Sbjct: 425  HLHLHCKEMVLPNISLALQRAQVVSDTDLVDVESIKLVAPLPFHMQKSWDCLSS 478


>XP_015063320.1 PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Solanum
            pennellii]
          Length = 478

 Score =  493 bits (1268), Expect = e-168
 Identities = 249/410 (60%), Positives = 311/410 (75%), Gaps = 10/410 (2%)
 Frame = +2

Query: 98   WYRLPEFRLSIDGASVGKAIAN-----SNNITTNPSAIKWVFRCCPELPTSLVHKLFRLR 262
            W  LP F  +++GA++G+ IA      + N     +A+KWV RCCPELP SLV KLFRLR
Sbjct: 69   WLTLPPFTATVNGAALGREIAGVKMDVNENSANTMTALKWVQRCCPELPKSLVQKLFRLR 128

Query: 263  QVRKQSCHFHLDNPKLNRVAAKDSLEVGDRIFLPISVQKILPLEPKVLVF--NDEEMKFI 436
            QVR+ S +     PK  RV+AK+S+ VGDRIFLPI+VQK  P E KV+ +  ++EE KF+
Sbjct: 129  QVRRDSSNVEEQRPK--RVSAKESMNVGDRIFLPITVQKF-PSE-KVVYYPSSEEERKFV 184

Query: 437  RSLLLYKDSAVIVINKPPGLPVQGGIGIKKSIDNLATKYLKYEYQDSPRLVHRLDRDCSG 616
             SL LYKD+ +IV+NKPPG+PVQGGIGIK+S+D LA KY++++Y ++PRLVHRLDRDCSG
Sbjct: 185  HSLELYKDAEIIVVNKPPGMPVQGGIGIKRSLDELAAKYMRHQYSEAPRLVHRLDRDCSG 244

Query: 617  VLVMGRTQLTASALHSIFREKTSALSNGDINHKKQIIQKKYWALVIGSPRRDKGLISAPL 796
            +LVMGRTQL+ASALHSIFREKT    N D+  KK+I+QKKYWALVIG PRR  G+ISAPL
Sbjct: 245  LLVMGRTQLSASALHSIFREKTFDSQNEDLESKKRILQKKYWALVIGCPRRSGGIISAPL 304

Query: 797  GKVIVGDGKSELIQIRDNIESSGAQYAVTEYRVIGSSNHGFTWLELCPLTGRKHQLRVHC 976
            GK+++ +GKSE I I  ++ +  AQYAVTEYR+IGSS  G+TWLEL PLTGRKHQLRVHC
Sbjct: 305  GKLVLDNGKSERITIMSDVRAPSAQYAVTEYRIIGSSEKGYTWLELSPLTGRKHQLRVHC 364

Query: 977  AEFLGTPIVGDFKYGWQAHRNLEHLSCIARSVSQQDKSPKPVIDPFDLDLESGSLSDKQW 1156
            AE LGTPIVGD+KYGWQAHR L+HL      ++   + P+   DPF+L L +GS+SDKQ 
Sbjct: 365  AEALGTPIVGDYKYGWQAHRKLKHLPLPTSVLNLGVEIPRQKPDPFNLRLGNGSISDKQP 424

Query: 1157 RLHLHCKEMVLPNIHATLQHAKMITDCSF---EELKFEAPLPSHMQQSWD 1297
             LHLHCKEMVLPNI   LQ A++++D      E +K  APLP HMQ+SWD
Sbjct: 425  HLHLHCKEMVLPNISQALQRAQVVSDADLVDVESIKLVAPLPFHMQKSWD 474


>XP_004230733.2 PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Solanum
            lycopersicum]
          Length = 478

 Score =  493 bits (1268), Expect = e-168
 Identities = 249/410 (60%), Positives = 310/410 (75%), Gaps = 10/410 (2%)
 Frame = +2

Query: 98   WYRLPEFRLSIDGASVGKAIAN-----SNNITTNPSAIKWVFRCCPELPTSLVHKLFRLR 262
            W  LP F  +++GA++G+ +A      + N T   +A+KWV RCCPELP SLV KLFRLR
Sbjct: 69   WLTLPPFTAAVNGAALGRELAGVKMDVNENSTNTMTALKWVQRCCPELPKSLVQKLFRLR 128

Query: 263  QVRKQSCHFHLDNPKLNRVAAKDSLEVGDRIFLPISVQKILPLEPKVLVF--NDEEMKFI 436
            QVR+ S +     PK  RV+AK+S+ VGDRIFLPI+VQK  P E KV+ +  ++EE KF+
Sbjct: 129  QVRRDSSNVEEQRPK--RVSAKESMNVGDRIFLPITVQKF-PSE-KVVYYPSSEEERKFV 184

Query: 437  RSLLLYKDSAVIVINKPPGLPVQGGIGIKKSIDNLATKYLKYEYQDSPRLVHRLDRDCSG 616
             SL LYKD+ +IV+NKPPG+PVQGGIGIK+S+D LA KY+ ++Y ++PRLVHRLDRDCSG
Sbjct: 185  HSLELYKDAEIIVVNKPPGMPVQGGIGIKRSLDELAAKYMSHQYSEAPRLVHRLDRDCSG 244

Query: 617  VLVMGRTQLTASALHSIFREKTSALSNGDINHKKQIIQKKYWALVIGSPRRDKGLISAPL 796
            +LVMGRTQL+ASALHSIFREKT    N D+  KK+I+QKKYWALVIG PRR  G+ISAPL
Sbjct: 245  LLVMGRTQLSASALHSIFREKTFDSQNEDLESKKRILQKKYWALVIGCPRRSGGIISAPL 304

Query: 797  GKVIVGDGKSELIQIRDNIESSGAQYAVTEYRVIGSSNHGFTWLELCPLTGRKHQLRVHC 976
            GK+++ +GKSE I I  ++    AQYAVTEYR+IGSS  G+TWLEL PLTGRKHQLRVHC
Sbjct: 305  GKLVLDNGKSERITIMSDVREPSAQYAVTEYRIIGSSEKGYTWLELSPLTGRKHQLRVHC 364

Query: 977  AEFLGTPIVGDFKYGWQAHRNLEHLSCIARSVSQQDKSPKPVIDPFDLDLESGSLSDKQW 1156
            AE LGTPIVGD+KYGWQAHR L+HL      ++   + P+   DPF+L L +GS+SDKQ 
Sbjct: 365  AEALGTPIVGDYKYGWQAHRKLKHLPLPTSVLNLVVEIPRQKPDPFNLRLGNGSISDKQP 424

Query: 1157 RLHLHCKEMVLPNIHATLQHAKMITDCSF---EELKFEAPLPSHMQQSWD 1297
             LHLHCKEMVLPNI   LQ A++++D      E +K  APLP HMQ+SWD
Sbjct: 425  HLHLHCKEMVLPNISLALQRAQVVSDADLVDVESIKLVAPLPFHMQKSWD 474


>XP_016582015.1 PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Capsicum
            annuum]
          Length = 452

 Score =  491 bits (1264), Expect = e-168
 Identities = 247/420 (58%), Positives = 315/420 (75%), Gaps = 11/420 (2%)
 Frame = +2

Query: 83   KKEEG-WYRLPEFRLSIDGASVGKAIAN-----SNNITTNPSAIKWVFRCCPELPTSLVH 244
            + E+G W+ LP F  ++DGA++G+ +A        N + N +A+KW+ RCCPELP SLV 
Sbjct: 37   ENEKGKWFTLPPFTATVDGAALGRELAGVKMDVKENSSNNITALKWIQRCCPELPKSLVQ 96

Query: 245  KLFRLRQVRKQSCHFHLDNPKLNRVAAKDSLEVGDRIFLPISVQKILPLEPKVLVF--ND 418
            KLFRLRQVR++S +     PK  RV+AK+S+ +GDRIFLPI+VQK  P E KV+ +  ++
Sbjct: 97   KLFRLRQVRRESSNVEEQRPK--RVSAKESMIIGDRIFLPITVQKF-PSE-KVVEYPTSE 152

Query: 419  EEMKFIRSLLLYKDSAVIVINKPPGLPVQGGIGIKKSIDNLATKYLKYEYQDSPRLVHRL 598
            EE KF+  L +YKD  +IV+NKPPG+   GGIGIK+S+D LA KYL++EY ++PRLVHRL
Sbjct: 153  EERKFVHGLEVYKDPEIIVVNKPPGMQKIGGIGIKRSLDELAAKYLRHEYSEAPRLVHRL 212

Query: 599  DRDCSGVLVMGRTQLTASALHSIFREKTSALSNGDINHKKQIIQKKYWALVIGSPRRDKG 778
            DRD SG+LVMGRTQ++ASALHSIFREKT    N D+ +KK+I+QKKYWALVIG PRR  G
Sbjct: 213  DRDSSGLLVMGRTQISASALHSIFREKTFDTQNEDLKNKKRILQKKYWALVIGCPRRSGG 272

Query: 779  LISAPLGKVIVGDGKSELIQIRDNIESSGAQYAVTEYRVIGSSNHGFTWLELCPLTGRKH 958
            +IS PLGKV++ +GKSE I I  ++ +  AQYAVTEYR+IGSS  G+TWLEL PLTGRKH
Sbjct: 273  IISVPLGKVVLDNGKSERITIMSDVRAPSAQYAVTEYRIIGSSGKGYTWLELSPLTGRKH 332

Query: 959  QLRVHCAEFLGTPIVGDFKYGWQAHRNLEHLSCIARSVSQQDKSPKPVIDPFDLDLESGS 1138
            QLRVHCAE LGTPIVGD+KYGWQAHR L+HL+C   +++Q  ++P+   DPF L L +GS
Sbjct: 333  QLRVHCAEALGTPIVGDYKYGWQAHRKLKHLTCSTSALNQGMQNPRQKTDPFSLRLGNGS 392

Query: 1139 LSDKQWRLHLHCKEMVLPNIHATLQHAKMITDCSF---EELKFEAPLPSHMQQSWDIFHS 1309
            +SDKQ  LHLHCKEMVLPNI   LQ  + ++D      E +K  APLP HMQ+SWD   S
Sbjct: 393  ISDKQPHLHLHCKEMVLPNISLALQQGQAVSDADLVDVESIKLVAPLPFHMQKSWDCLSS 452


>XP_009805028.1 PREDICTED: RNA pseudouridine synthase 4, mitochondrial isoform X2
            [Nicotiana sylvestris]
          Length = 481

 Score =  483 bits (1242), Expect = e-164
 Identities = 242/413 (58%), Positives = 298/413 (72%), Gaps = 5/413 (1%)
 Frame = +2

Query: 86   KEEGWYRLPEFRLSIDGASVGKAIAN--SNNITTNPSAIKWVFRCCPELPTSLVHKLFRL 259
            K+  W+ LP F  +++GA++GK +A    +  T   +A+KWV RCCPELP SLV KLFRL
Sbjct: 86   KKGKWFTLPPFTATVNGAALGKELAGVKMDKSTNTMTALKWVQRCCPELPQSLVQKLFRL 145

Query: 260  RQVRKQSCHFHLDNPKLNRVAAKDSLEVGDRIFLPISVQKILPLEPKVLVFNDEEMKFIR 439
            RQV                 AAK+S+ +GDRIFLPI+VQK    + +    ++EEMKF+ 
Sbjct: 146  RQV-----------------AAKESMNIGDRIFLPITVQKFPSDKVEDYPSSEEEMKFLH 188

Query: 440  SLLLYKDSAVIVINKPPGLPVQGGIGIKKSIDNLATKYLKYEYQDSPRLVHRLDRDCSGV 619
            SL LYKD  +IV+NKPPGLPVQGGIGIK+S+D LA KY+KYEY ++PRLVHRLDRDCSG+
Sbjct: 189  SLELYKDPEIIVLNKPPGLPVQGGIGIKRSLDELAAKYMKYEYSEAPRLVHRLDRDCSGI 248

Query: 620  LVMGRTQLTASALHSIFREKTSALSNGDINHKKQIIQKKYWALVIGSPRRDKGLISAPLG 799
            LVMGRTQL+AS LHS+FREKT      D+  KK+++QK+YWALVIG PRR KGLIS PLG
Sbjct: 249  LVMGRTQLSASVLHSVFREKTFGTQTEDLESKKRVLQKRYWALVIGCPRRSKGLISVPLG 308

Query: 800  KVIVGDGKSELIQIRDNIESSGAQYAVTEYRVIGSSNHGFTWLELCPLTGRKHQLRVHCA 979
            KV++ +GKSE I I  ++    AQ+AVTEYR+IGSS  G+TWLEL PLTGRKHQLRVHCA
Sbjct: 309  KVVLDNGKSERITIMSDVREPSAQFAVTEYRIIGSSEKGYTWLELSPLTGRKHQLRVHCA 368

Query: 980  EFLGTPIVGDFKYGWQAHRNLEHLSCIARSVSQQDKSPKPVIDPFDLDLESGSLSDKQWR 1159
            E LGTPIVGD+KYGWQAHR L+HLS     V+   +  +   DPF L L +GS+SDKQ  
Sbjct: 369  EVLGTPIVGDYKYGWQAHRKLKHLSSSTSIVNLGARILEQEADPFSLRLGNGSISDKQPH 428

Query: 1160 LHLHCKEMVLPNIHATLQHAKMITDCSF---EELKFEAPLPSHMQQSWDIFHS 1309
            LHLHCKEMVLPN    LQ A++++       E +K  APLPSHMQ+SWD   S
Sbjct: 429  LHLHCKEMVLPNFSLALQQARVVSGADLVHVESIKLVAPLPSHMQKSWDCLSS 481


>XP_002282614.1 PREDICTED: RNA pseudouridine synthase 4, mitochondrial isoform X1
            [Vitis vinifera] CBI40257.3 unnamed protein product,
            partial [Vitis vinifera]
          Length = 476

 Score =  481 bits (1239), Expect = e-164
 Identities = 248/428 (57%), Positives = 314/428 (73%), Gaps = 20/428 (4%)
 Frame = +2

Query: 86   KEEGWYRLPEFRLSIDGASVGKAIA------NSNNITTNPS--AIKWVFRCCPELPTSLV 241
            K+  W+ LP F   +D +S+GK ++      N+ N T   S  A+KWV RCCP+LP SLV
Sbjct: 52   KKGKWFTLPAFTPVVDASSLGKVLSGHRTDLNTGNTTAGASTTALKWVVRCCPQLPRSLV 111

Query: 242  HKLFRLRQVRKQSCHFHLDN-------PKLNRVAAKDSLEVGDRIFLPISVQKILPLEPK 400
             KLFRLRQVR++S +    +        +L RVAAKD + +GD+I LPI+V++  P E  
Sbjct: 112  QKLFRLRQVRRESYNMITSDIGVQNQEHRLKRVAAKDLMNLGDQILLPITVEEF-PSEKH 170

Query: 401  VLVFNDEEMKFIRSLLLYKDSAVIVINKPPGLPVQGGIGIKKSIDNLATKYLKYEYQDSP 580
                NDEE+ F+ +L LYKD A+IV+NKPPGLPVQGGIGIK+S+D LA  YL+Y+  + P
Sbjct: 171  EYHCNDEEINFVHNLELYKDPAIIVVNKPPGLPVQGGIGIKRSLDELAATYLRYDCSEPP 230

Query: 581  RLVHRLDRDCSGVLVMGRTQLTASALHSIFREKTSALSNGDINHKKQIIQKKYWALVIGS 760
            RLVHRLDRD SG+L+MGRTQ +A+ LHSIFREKT   SN DI+ KK+I+Q++YWALVIGS
Sbjct: 231  RLVHRLDRDSSGILIMGRTQTSATILHSIFREKTFGASNNDIDTKKRILQRRYWALVIGS 290

Query: 761  PRRDKGLISAPLGKVIVGDGKSELIQIRDNIESSGAQYAVTEYRVIGSSNHGFTWLELCP 940
            PRR +GLISAPLGKV+V DGKSE I I DN+++  +Q+A+TEYRVI SS HG+TWLEL P
Sbjct: 291  PRRPRGLISAPLGKVVVDDGKSERITIVDNVQTMSSQHAITEYRVIKSSCHGYTWLELSP 350

Query: 941  LTGRKHQLRVHCAEFLGTPIVGDFKYGWQAHRNLEHL--SCIARSVSQQDKSPKPVIDPF 1114
            LTGRKHQLRVHCAE LGTPIVGD+KYGWQAHR  + L  S I +++ +   + K    PF
Sbjct: 351  LTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWKQLFQSNIEKNLDENLSNRK--THPF 408

Query: 1115 DLDLESGSLSDKQWRLHLHCKEMVLPNIHATLQHAKMITDC---SFEELKFEAPLPSHMQ 1285
             LDLESGS+ DKQ  LHLHCK+MVLPN+   LQ+ ++  +C     E L+F APLPSHMQ
Sbjct: 409  GLDLESGSILDKQPHLHLHCKQMVLPNVSLALQNLQLSAECDLSELESLEFVAPLPSHMQ 468

Query: 1286 QSWDIFHS 1309
            +SWDI +S
Sbjct: 469  RSWDILNS 476


>XP_012075891.1 PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Jatropha
            curcas] XP_012075896.1 PREDICTED: RNA pseudouridine
            synthase 4, mitochondrial [Jatropha curcas]
            XP_012075899.1 PREDICTED: RNA pseudouridine synthase 4,
            mitochondrial [Jatropha curcas] XP_012075905.1 PREDICTED:
            RNA pseudouridine synthase 4, mitochondrial [Jatropha
            curcas] KDP45903.1 hypothetical protein JCGZ_15463
            [Jatropha curcas]
          Length = 470

 Score =  481 bits (1237), Expect = e-164
 Identities = 241/420 (57%), Positives = 310/420 (73%), Gaps = 7/420 (1%)
 Frame = +2

Query: 71   RLSGKKEEGWYRLPEFRLSIDGASVGKA--IANSNNITTNPSAIKWVFRCCPELPTSLVH 244
            ++  KK+  W+ LP +  +I G+++GKA  ++ S  +    +A+KWV RCCPELP SLV 
Sbjct: 50   KIDDKKKGKWFTLPPYTSTISGSALGKALSVSISEKLANETTALKWVLRCCPELPRSLVQ 109

Query: 245  KLFRLRQVRKQSCHFH--LDNPKLNRVAAKDSLEVGDRIFLPISVQKILPLEPKVLVFND 418
            KLFRLRQVR++S +     +  K+ RVAAKD + +GDRIFLPI+VQ  LP E +  V+N 
Sbjct: 110  KLFRLRQVRRESSNLRDQAEEQKVKRVAAKDLMSIGDRIFLPITVQA-LPSEKQQNVYNQ 168

Query: 419  EEMKFIRSLLLYKDSAVIVINKPPGLPVQGGIGIKKSIDNLATKYLKYEYQDSPRLVHRL 598
            E + FIRSL LYKD  +IV+NKPPG+PVQGGIGIK+S+D LA   L Y+Y + PRLVHRL
Sbjct: 169  EAVNFIRSLELYKDDIIIVVNKPPGIPVQGGIGIKRSLDELAASCLSYDYSEPPRLVHRL 228

Query: 599  DRDCSGVLVMGRTQLTASALHSIFREKTSALSNGDINHKKQIIQKKYWALVIGSPRRDKG 778
            DRD SG+LVMGRTQ + + LHS+FREKT A SN DI  +++I+Q+KYWALVIGSPR  KG
Sbjct: 229  DRDSSGILVMGRTQTSTTVLHSVFREKTFAASNDDIGDRRRILQRKYWALVIGSPRCQKG 288

Query: 779  LISAPLGKVIVGDGKSELIQIRDNIESSGAQYAVTEYRVIGSSNHGFTWLELCPLTGRKH 958
            LISAPLGKV+V +GKS+ I + +N+ ++ +Q+AVT YRV+  S   +TWLEL PLTGRKH
Sbjct: 289  LISAPLGKVLVDNGKSDRITVIENVHNTSSQHAVTHYRVL-ESFQDYTWLELSPLTGRKH 347

Query: 959  QLRVHCAEFLGTPIVGDFKYGWQAHRNLEHLSCIARSVSQQDKSPKPVIDPFDLDLESGS 1138
            QLRVHCAE LGTPIVGD+KYGWQAHR  +HL       +  DK P   + P  +D ESGS
Sbjct: 348  QLRVHCAEVLGTPIVGDYKYGWQAHRKWKHLHWSDLEKTLHDKVPCEKMLPLGIDFESGS 407

Query: 1139 LSDKQWRLHLHCKEMVLPNIHATLQHAKMITDCSF---EELKFEAPLPSHMQQSWDIFHS 1309
            +S+KQ RLHLHCK+MVLPN+   LQ AK+  D +F   E ++ +APLPS+MQ+SWDI  S
Sbjct: 408  ISEKQPRLHLHCKQMVLPNVSQALQDAKISPDYNFSDMETIELDAPLPSYMQRSWDILSS 467


>OAY45543.1 hypothetical protein MANES_07G069900 [Manihot esculenta]
          Length = 482

 Score =  479 bits (1232), Expect = e-163
 Identities = 245/416 (58%), Positives = 311/416 (74%), Gaps = 7/416 (1%)
 Frame = +2

Query: 83   KKEEGWYRLPEFRLSIDGASVGKAIAN--SNNITTNPSAIKWVFRCCPELPTSLVHKLFR 256
            KK+  W+ LP +  +I G+++GKA++   +    T  +A+KWV RCCPELP SLV KLFR
Sbjct: 65   KKKGKWFTLPPYTCTISGSALGKALSAKITAKAATETTALKWVLRCCPELPRSLVQKLFR 124

Query: 257  LRQVRKQSCH--FHLDNPKLNRVAAKDSLEVGDRIFLPISVQKILPLEPKVLVFNDEEMK 430
            LRQVR++S +     +  +L RVAAKD L+VGDRIFLPI+VQ  LP E +   +N+EE+ 
Sbjct: 125  LRQVRRESSNPGDQTEEQRLKRVAAKDLLDVGDRIFLPITVQA-LPSEKQQCSYNEEEIN 183

Query: 431  FIRSLLLYKDSAVIVINKPPGLPVQGGIGIKKSIDNLATKYLKYEYQDSPRLVHRLDRDC 610
            FIRSLLLYKD  +IV+NKPPG+PVQGGIGIK+S+D LA   L Y+Y +SPRLVHRLDRD 
Sbjct: 184  FIRSLLLYKDDDIIVVNKPPGMPVQGGIGIKRSLDELAAHCLCYDYPESPRLVHRLDRDS 243

Query: 611  SGVLVMGRTQLTASALHSIFREKTSALSNGDINHKKQIIQKKYWALVIGSPRRDKGLISA 790
            SG+LVMGRTQ + + LHSIFREKT A SN DI  +++I+QKKYWALVIGSPRR KGLISA
Sbjct: 244  SGILVMGRTQTSTTVLHSIFREKTFAASNDDIGDRRRILQKKYWALVIGSPRRQKGLISA 303

Query: 791  PLGKVIVGDGKSELIQIRDNIESSGAQYAVTEYRVIGSSNHGFTWLELCPLTGRKHQLRV 970
            PLGKV+V +GKS+ I + DN  ++ +Q+AVT+YRVI SS  G+TWLEL PLTGRKHQLRV
Sbjct: 304  PLGKVVVDNGKSDRITVVDNAHNTSSQHAVTQYRVIESS-LGYTWLELSPLTGRKHQLRV 362

Query: 971  HCAEFLGTPIVGDFKYGWQAHRNLEHLSCIARSVSQQDKSPKPVIDPFDLDLESGSLSDK 1150
            HCAE LG PIVGD+KYGWQAHR  +HL       S  +K     + PF+++LE GS+ +K
Sbjct: 363  HCAEVLGAPIVGDYKYGWQAHRKWKHLPWSDLEKSSIEKVACNKMLPFEIELEGGSIYEK 422

Query: 1151 QWRLHLHCKEMVLPNIHATLQHAKMITDCSF---EELKFEAPLPSHMQQSWDIFHS 1309
            Q RLHLHCK+MVLPN+   L+  KM ++  F   E ++ +A LP  MQ+SWDI +S
Sbjct: 423  QPRLHLHCKQMVLPNVSQALRGVKMSSEYDFSDLESIELDAALPPFMQRSWDILNS 478


>XP_018634268.1 PREDICTED: RNA pseudouridine synthase 4, mitochondrial isoform X2
            [Nicotiana tomentosiformis]
          Length = 449

 Score =  475 bits (1223), Expect = e-162
 Identities = 238/409 (58%), Positives = 295/409 (72%), Gaps = 5/409 (1%)
 Frame = +2

Query: 86   KEEGWYRLPEFRLSIDGASVGKAIAN--SNNITTNPSAIKWVFRCCPELPTSLVHKLFRL 259
            K+  W+ LP F  +++GA++GK +A       T   +A+KWV RCCPELP SLV KLFRL
Sbjct: 54   KKGKWFTLPPFNPTVNGAALGKELAGVKMGKSTNTLTALKWVQRCCPELPQSLVQKLFRL 113

Query: 260  RQVRKQSCHFHLDNPKLNRVAAKDSLEVGDRIFLPISVQKILPLEPKVLVFNDEEMKFIR 439
            RQV                 AAK+ + +GDRIFLPI+VQK    +      ++EEMKF+ 
Sbjct: 114  RQV-----------------AAKEPMNIGDRIFLPITVQKFPSDKVTDYPSSEEEMKFLH 156

Query: 440  SLLLYKDSAVIVINKPPGLPVQGGIGIKKSIDNLATKYLKYEYQDSPRLVHRLDRDCSGV 619
            SL LYKD  +IV+NKPPGLPVQGGIGIK+S+D LA KY+K+EY ++PRLVHRLDRDCSG+
Sbjct: 157  SLELYKDPEIIVLNKPPGLPVQGGIGIKRSLDELAAKYMKFEYSEAPRLVHRLDRDCSGI 216

Query: 620  LVMGRTQLTASALHSIFREKTSALSNGDINHKKQIIQKKYWALVIGSPRRDKGLISAPLG 799
            LVMGRTQL+AS LHS+FREKT      D+  KK+++QK+YWALVIG PRR KG+IS PL 
Sbjct: 217  LVMGRTQLSASVLHSVFREKTFGTQTEDLESKKRVLQKRYWALVIGCPRRSKGVISVPLA 276

Query: 800  KVIVGDGKSELIQIRDNIESSGAQYAVTEYRVIGSSNHGFTWLELCPLTGRKHQLRVHCA 979
            KV++ +GKSE I I  ++    AQ+AVTEYR+IGSS  G+TWLEL PLTGRKHQLRVHCA
Sbjct: 277  KVVLDNGKSERITIMSDVREPSAQFAVTEYRIIGSSEKGYTWLELSPLTGRKHQLRVHCA 336

Query: 980  EFLGTPIVGDFKYGWQAHRNLEHLSCIARSVSQQDKSPKPVIDPFDLDLESGSLSDKQWR 1159
            E LGTPIVGD+KYGWQAHR L+HLS    +V+   + P+   DPF L L +GS+SDKQ  
Sbjct: 337  EVLGTPIVGDYKYGWQAHRKLKHLSSSISTVNLGARIPEQEADPFSLCLGNGSISDKQPH 396

Query: 1160 LHLHCKEMVLPNIHATLQHAKMITDCSF---EELKFEAPLPSHMQQSWD 1297
            LHLHCKEMVLPNI   LQ A++++       E +K  A LPSHMQ+SWD
Sbjct: 397  LHLHCKEMVLPNISLALQQARVVSGADLIDVESIKLVAHLPSHMQKSWD 445


>XP_002313876.2 hypothetical protein POPTR_0009s09860g [Populus trichocarpa]
            EEE87831.2 hypothetical protein POPTR_0009s09860g
            [Populus trichocarpa]
          Length = 471

 Score =  476 bits (1225), Expect = e-162
 Identities = 247/420 (58%), Positives = 312/420 (74%), Gaps = 15/420 (3%)
 Frame = +2

Query: 86   KEEGWYRLPEFRLSIDGASVGKAI-----ANSNNITTNPSAIKWVFRCCPELPTSLVHKL 250
            K   W+ LP +  +I+G+ +G A+     A S + TT   A+KWV RCCPELP +LV KL
Sbjct: 54   KRGKWFTLPPYTSTINGSVLGIALSARIPAKSASETT---ALKWVLRCCPELPRNLVQKL 110

Query: 251  FRLRQVRKQSCHFHLDN-------PKLNRVAAKDSLEVGDRIFLPISVQKILPLEPKVLV 409
            FRLRQVR++S      N        +L RVAAKDS++VGDRIFLPISV K+LP E +   
Sbjct: 111  FRLRQVRRESPVMESCNLGDQGQEHRLKRVAAKDSMDVGDRIFLPISV-KVLPAEKQDCH 169

Query: 410  FNDEEMKFIRSLLLYKDSAVIVINKPPGLPVQGGIGIKKSIDNLATKYLKYEYQDSPRLV 589
             N+EE+ FIR L LYKD+A+IV+NKPPG+PVQGGIGIK+S+D L+      +Y + PRLV
Sbjct: 170  CNEEEINFIRGLELYKDAAIIVVNKPPGMPVQGGIGIKRSLDELSASCFSSDYSEPPRLV 229

Query: 590  HRLDRDCSGVLVMGRTQLTASALHSIFREKTSALSNGDINHKKQIIQKKYWALVIGSPRR 769
            HRLDRDCSG+LVMGRTQ +A+ LH+IFREKT A SN D+ +K++I+Q+KYWALVIGSPRR
Sbjct: 230  HRLDRDCSGILVMGRTQTSATVLHAIFREKTLAASNDDVGNKRRILQRKYWALVIGSPRR 289

Query: 770  DKGLISAPLGKVIVGDGKSELIQIRDNIESSGAQYAVTEYRVIGSSNHGFTWLELCPLTG 949
             KGLISAPLGKV+V +GKS+ I + +N ++  +Q+AVT+YRVI SS HGFTWLEL PLTG
Sbjct: 290  PKGLISAPLGKVVVDNGKSDRITVVENSQNLSSQHAVTQYRVIESS-HGFTWLELSPLTG 348

Query: 950  RKHQLRVHCAEFLGTPIVGDFKYGWQAHRNLEHLSCIARSVSQQDKSPKPVIDPFDLDLE 1129
            RKHQLRVHCAE LGTPIVGD+KY WQAHRN + L       +  DKS    I PF LDL+
Sbjct: 349  RKHQLRVHCAEVLGTPIVGDYKYAWQAHRNWKQLQWSNIEDNSNDKSLSEKILPFALDLD 408

Query: 1130 SGSLSDKQWRLHLHCKEMVLPNIHATLQHAKMITDCSFEE---LKFEAPLPSHMQQSWDI 1300
            SGS+S+K  RLHLHCK+MVLP++   LQ  ++ +D  F +   LKF+APLP +M++SWDI
Sbjct: 409  SGSISEKHPRLHLHCKQMVLPDVSKALQDVQLSSDYDFSQLASLKFDAPLPPYMKKSWDI 468


>XP_011001179.1 PREDICTED: RNA pseudouridine synthase 4, mitochondrial isoform X2
            [Populus euphratica]
          Length = 471

 Score =  471 bits (1212), Expect = e-160
 Identities = 241/417 (57%), Positives = 305/417 (73%), Gaps = 12/417 (2%)
 Frame = +2

Query: 86   KEEGWYRLPEFRLSIDGASVGKAIANS--NNITTNPSAIKWVFRCCPELPTSLVHKLFRL 259
            K   W+ LP +  +I+G+ +GKA++        +  +A+KWV RCCPELP +LV KLFRL
Sbjct: 54   KRGKWFTLPPYTSTINGSVLGKALSTRIPAKSASETTALKWVLRCCPELPRNLVQKLFRL 113

Query: 260  RQVRKQSCHFHLDN-------PKLNRVAAKDSLEVGDRIFLPISVQKILPLEPKVLVFND 418
            RQVR++S      N        +L RVAAKDS++VGDRIFLPISV K LP E +    ++
Sbjct: 114  RQVRRESSVMESCNLGDQGQEHRLKRVAAKDSMDVGDRIFLPISV-KALPAEKQDCHCSE 172

Query: 419  EEMKFIRSLLLYKDSAVIVINKPPGLPVQGGIGIKKSIDNLATKYLKYEYQDSPRLVHRL 598
            EE  FIR L LYKD A+IV+NKPPG+PVQGGIGIK+S+D L+      +Y + PRLVHRL
Sbjct: 173  EETNFIRGLELYKDDAIIVVNKPPGMPVQGGIGIKRSLDELSASCFSSDYSEPPRLVHRL 232

Query: 599  DRDCSGVLVMGRTQLTASALHSIFREKTSALSNGDINHKKQIIQKKYWALVIGSPRRDKG 778
            DRDCSG+LVMGRTQ +A+ LH+IFREKT A SN D+  K++I+Q+KYWALVIGSPRR KG
Sbjct: 233  DRDCSGILVMGRTQTSATVLHAIFREKTLAASNDDVGDKRRILQRKYWALVIGSPRRQKG 292

Query: 779  LISAPLGKVIVGDGKSELIQIRDNIESSGAQYAVTEYRVIGSSNHGFTWLELCPLTGRKH 958
            LISAPLGKV+V +GKS+ I + +N ++  +Q+AVT+YRVI SS HGFTWLEL PLTGRKH
Sbjct: 293  LISAPLGKVVVDNGKSDRITVVENSQNLSSQHAVTQYRVIESS-HGFTWLELSPLTGRKH 351

Query: 959  QLRVHCAEFLGTPIVGDFKYGWQAHRNLEHLSCIARSVSQQDKSPKPVIDPFDLDLESGS 1138
            QLRVHCAE LGTPIVGD+KY WQAHRN + L       +  +KS    I PF LDL+SG 
Sbjct: 352  QLRVHCAEVLGTPIVGDYKYAWQAHRNWKQLPWSNIEDNSNEKSRSEKILPFALDLDSGG 411

Query: 1139 LSDKQWRLHLHCKEMVLPNIHATLQHAKMITDCSFEE---LKFEAPLPSHMQQSWDI 1300
            +S+K  RLHLHCK+MVLP++   LQ   + +D  F +   LKF+APLP +M++SWDI
Sbjct: 412  ISEKHPRLHLHCKQMVLPDVSKALQDVHLSSDYDFSQLASLKFDAPLPPYMKRSWDI 468


>XP_011092538.1 PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Sesamum
            indicum]
          Length = 454

 Score =  468 bits (1204), Expect = e-159
 Identities = 239/414 (57%), Positives = 298/414 (71%), Gaps = 5/414 (1%)
 Frame = +2

Query: 80   GKKEEGWYRLPEFRLSIDGASVGKAIANSNNITTNPSAIKWVFRCCPELPTSLVHKLFRL 259
            GK +  W  LP F  ++DG+S+GK +       ++ +A+KW+ +CCP LP SLV KLFRL
Sbjct: 43   GKNDSRWLMLPPFDPAVDGSSIGKKLCGEPT-DSSMTALKWIVKCCPHLPRSLVQKLFRL 101

Query: 260  RQVRKQSCHFHLDNPKLNRVAAKDSLEVGDRIFLPISVQKILPLEPKVLV-FNDEE-MKF 433
            RQVRK+  +      +  R+ AKD +++GDRI LP SV    P    V   F+DEE +K 
Sbjct: 102  RQVRKECSNIETKEQRPRRIGAKDLMDIGDRILLPKSVDGKSPSTTAVSQSFSDEEELKL 161

Query: 434  IRSLLLYKDSAVIVINKPPGLPVQGGIGIKKSIDNLATKYLKYEYQDSPRLVHRLDRDCS 613
            ++SL LYKD A+IVINKPPG+PVQGGIGIK+S+D LA KYLKY+Y +SPRLVHRLDRD S
Sbjct: 162  VKSLELYKDPAIIVINKPPGMPVQGGIGIKRSLDELAAKYLKYDYAESPRLVHRLDRDSS 221

Query: 614  GVLVMGRTQLTASALHSIFREKTSALSNGDINHKKQIIQKKYWALVIGSPRRDKGLISAP 793
            G+LVMGRTQLTA+ LHSIFREKT   S+ D+   K+I+QK+YWALVIGSPRR +GLIS P
Sbjct: 222  GILVMGRTQLTATILHSIFREKTFGASD-DVPDSKKILQKRYWALVIGSPRRREGLISVP 280

Query: 794  LGKVIVGDGKSELIQIRDNIESSGAQYAVTEYRVIGSSNHGFTWLELCPLTGRKHQLRVH 973
            LGKV++ +GKSE I + D  ++  AQ+AVTEYRVI SS  G+TWLEL PLTGRKHQLRVH
Sbjct: 281  LGKVVIDNGKSERITVVDTTKTVSAQHAVTEYRVIASSPCGYTWLELLPLTGRKHQLRVH 340

Query: 974  CAEFLGTPIVGDFKYGWQAHRNLEHLSCIARSVSQQDKSPKPVIDPFDLDLESGSLSDKQ 1153
            CAE LGTPIVGD+KYGWQAH+ L      A  +   +K  +   D    D E GS+SDKQ
Sbjct: 341  CAEVLGTPIVGDYKYGWQAHKRLGSRLVYASDLRWHNKISEVQHDTVGFDSEIGSISDKQ 400

Query: 1154 WRLHLHCKEMVLPNIHATLQHAKMITD---CSFEELKFEAPLPSHMQQSWDIFH 1306
             RLHLHCKEM+LPNI   LQH   I+D    + E +K  APLP+HMQ+SWD+ +
Sbjct: 401  LRLHLHCKEMILPNISLALQHRNGISDLDTAATESIKLVAPLPAHMQRSWDLLN 454


>XP_017639587.1 PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Gossypium
            arboreum]
          Length = 479

 Score =  469 bits (1206), Expect = e-159
 Identities = 239/429 (55%), Positives = 309/429 (72%), Gaps = 20/429 (4%)
 Frame = +2

Query: 83   KKEEGWYRLPEFRLSIDGASVGKAIANSNNI---------TTNPSAIKWVFRCCPELPTS 235
            KKE  W+ LP F  ++  + +G  +A  N++         T   +A+KWV +CCPELP +
Sbjct: 52   KKESKWFTLPPFAKTVSASELGAKLARKNHLKSATSAETSTYKTTALKWVLKCCPELPRN 111

Query: 236  LVHKLFRLRQVRKQSCHFHLDNP-------KLNRVAAKDSLEVGDRIFLPISVQKILPLE 394
            LV KLFRLRQVR++S    + +        +L RV AKDSL +GD+IFLPISV+++ P E
Sbjct: 112  LVQKLFRLRQVRRESIAMEVTDDGCQVQKIQLKRVGAKDSLNIGDKIFLPISVREV-PEE 170

Query: 395  PKVLVFNDEEMKFIRSLLLYKDSAVIVINKPPGLPVQGGIGIKKSIDNLATKYLKYEYQD 574
                   DEE  FIRSL LYKD+A+IV+NKPPG+PVQGGIGIK S+D LA  +L+Y+Y +
Sbjct: 171  KHEHDCTDEESNFIRSLELYKDTAIIVLNKPPGMPVQGGIGIKWSLDELAAAWLRYDYSE 230

Query: 575  SPRLVHRLDRDCSGVLVMGRTQLTASALHSIFREKTSALSNGDINHKKQIIQKKYWALVI 754
            SPRLVHRLDRDCSG+LVMGRTQ++A+ LHS+FRE+T   S  D +++K+++QK+YWALVI
Sbjct: 231  SPRLVHRLDRDCSGILVMGRTQMSAAILHSVFREETLGASKHDSDNEKRVLQKRYWALVI 290

Query: 755  GSPRRDKGLISAPLGKVIVGDGKSELIQI-RDNIESSGAQYAVTEYRVIGSSNHGFTWLE 931
            GSPRR KG ISAPL KV+V DGKS+ I +   N     +Q A+TEYRVI +S HGFTWLE
Sbjct: 291  GSPRRPKGTISAPLRKVVVDDGKSDRITVFEHNKTILSSQRAITEYRVIKTSTHGFTWLE 350

Query: 932  LCPLTGRKHQLRVHCAEFLGTPIVGDFKYGWQAHRNLEHLSCIARSVSQQDKSPKPVIDP 1111
            L PLTGRKHQLRVHCAE LGTPIVGD+KYGWQAHR L++L+      +  +K  K  + P
Sbjct: 351  LSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRRLQNLAESDLRKNSNEKVAKENMLP 410

Query: 1112 FDLDLESGSLSDKQWRLHLHCKEMVLPNIHATLQHAKMITDCSFEELK---FEAPLPSHM 1282
            F L+++SGS+S+KQ RLHLHC+EM+L N+   LQ+ K  TD    +LK     APLPS+M
Sbjct: 411  FGLNMDSGSISEKQLRLHLHCREMILLNVSQVLQNPKSFTDDDLSKLKSLEIVAPLPSYM 470

Query: 1283 QQSWDIFHS 1309
            Q+SWDI +S
Sbjct: 471  QKSWDILNS 479


>XP_012450617.1 PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Gossypium
            raimondii] KJB12280.1 hypothetical protein
            B456_002G009500 [Gossypium raimondii]
          Length = 479

 Score =  468 bits (1204), Expect = e-158
 Identities = 237/429 (55%), Positives = 309/429 (72%), Gaps = 20/429 (4%)
 Frame = +2

Query: 83   KKEEGWYRLPEFRLSIDGASVGKAIANSNNITTNPSA---------IKWVFRCCPELPTS 235
            KKE  W+ LP F  +++ + +G  +A  N++ +  SA         +KWV +CCPELP +
Sbjct: 52   KKESKWFTLPPFAKTVNASELGAKLARKNHLKSATSAETSAYETTALKWVLKCCPELPRN 111

Query: 236  LVHKLFRLRQVRKQSCHFHLDNP-------KLNRVAAKDSLEVGDRIFLPISVQKILPLE 394
            LV KLFRLRQVR++S    + +        +L RV AKDSL +GD+IFLPISV+++ P E
Sbjct: 112  LVQKLFRLRQVRRESIAMEVTDDGCQVQKIQLKRVGAKDSLNIGDKIFLPISVREV-PEE 170

Query: 395  PKVLVFNDEEMKFIRSLLLYKDSAVIVINKPPGLPVQGGIGIKKSIDNLATKYLKYEYQD 574
                   DEE  FIRSL LYKD+A+IV+NKPPG+PVQGGIGIK S+D LA  +L+Y+Y +
Sbjct: 171  KHEHDCTDEESNFIRSLELYKDTAIIVLNKPPGMPVQGGIGIKWSLDELAAAWLRYDYSE 230

Query: 575  SPRLVHRLDRDCSGVLVMGRTQLTASALHSIFREKTSALSNGDINHKKQIIQKKYWALVI 754
            SPRLVHRLDRDCSG+LVMGRTQ++A+ LHS+FRE+T   S  D +++K+++QK+YWALVI
Sbjct: 231  SPRLVHRLDRDCSGILVMGRTQMSAAILHSVFREETLGASKHDSDNEKRVLQKRYWALVI 290

Query: 755  GSPRRDKGLISAPLGKVIVGDGKSELIQI-RDNIESSGAQYAVTEYRVIGSSNHGFTWLE 931
            GSPRR KG ISAPL KV+V DGKS+ I +   N     +Q A+TEYRVI +S HGFTWLE
Sbjct: 291  GSPRRPKGTISAPLRKVVVDDGKSDRITVFEHNNTILSSQRAITEYRVIKTSTHGFTWLE 350

Query: 932  LCPLTGRKHQLRVHCAEFLGTPIVGDFKYGWQAHRNLEHLSCIARSVSQQDKSPKPVIDP 1111
            L PLTGRKHQLRVHCAE LGTPIVGD+KYGWQAHR  ++L+      +  +K  K  + P
Sbjct: 351  LSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRRFQNLAESDLRKNSNEKVAKENMLP 410

Query: 1112 FDLDLESGSLSDKQWRLHLHCKEMVLPNIHATLQHAKMITD---CSFEELKFEAPLPSHM 1282
            F L+++SGS+S+K  RLHLHC+EM+LPN+   L++ K  TD      + LK  APLPS+M
Sbjct: 411  FGLNMDSGSISEKHLRLHLHCREMILPNVSQVLRNPKSFTDDDLSKLKSLKIVAPLPSYM 470

Query: 1283 QQSWDIFHS 1309
            Q+SWDI +S
Sbjct: 471  QKSWDILNS 479


>XP_008236380.1 PREDICTED: RNA pseudouridine synthase 4, mitochondrial [Prunus mume]
          Length = 483

 Score =  468 bits (1204), Expect = e-158
 Identities = 245/440 (55%), Positives = 315/440 (71%), Gaps = 31/440 (7%)
 Frame = +2

Query: 83   KKEEGWYRLPEFRLSIDGASVGKAI--------------ANSNNITTNPSAIKWVFRCCP 220
            K+ E W+ LP F  +I+G+++GK +              A ++  +T  +A+KWV RCCP
Sbjct: 45   KRGEKWFTLPPFTATINGSALGKELSRNRSYGRDVITKTATTSTTSTTTTALKWVTRCCP 104

Query: 221  ELPTSLVHKLFRLRQVRKQSCHFH--------LDNPKLNRVAAKDSLEVGDRIFLPISVQ 376
            ELP SLV KLFRLRQVR++SC           L+ P L RVAAKDS+ VGDRI LPISVQ
Sbjct: 105  ELPRSLVQKLFRLRQVRRESCDMECSGEGVEALERP-LKRVAAKDSMNVGDRIHLPISVQ 163

Query: 377  KI------LPLEPKVLVFNDEEMKFIRSLLLYKDSAVIVINKPPGLPVQGGIGIKKSIDN 538
            +       LP + K    ++EE+ FIRSL LYKD A+IVINKPPG+PVQGGIGIK+S+D 
Sbjct: 164  EFPNDKQELPNDKKECHCSEEEVTFIRSLELYKDPAIIVINKPPGMPVQGGIGIKRSLDE 223

Query: 539  LATKYLKYEYQDSPRLVHRLDRDCSGVLVMGRTQLTASALHSIFREKTSALSNGDINHKK 718
            LA   L Y++ +SPRLVHRLDRD SG+LVMGRTQ +A+ LHSIFREKT   SN  I+  K
Sbjct: 224  LAAACLSYDFSESPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFGASNDVIDDAK 283

Query: 719  QIIQKKYWALVIGSPRRDKGLISAPLGKVIVGDGKSELIQIRDNIESSGAQYAVTEYRVI 898
            +I+Q++YWALVIGSPR+ KGLISAPLGKV+V +GKS+ I I ++ ++  +Q+A+T+Y+VI
Sbjct: 284  RILQRRYWALVIGSPRQRKGLISAPLGKVVVDNGKSDRITIVNDSQTLPSQHAITKYKVI 343

Query: 899  GSSNHGFTWLELCPLTGRKHQLRVHCAEFLGTPIVGDFKYGWQAHRNLEHLSCIARSVSQ 1078
            GS   G+TWLEL PLTGRKHQLRVHCAE L TPIVGD+KYGWQ HRN + L+        
Sbjct: 344  GSPCPGYTWLELTPLTGRKHQLRVHCAEVLQTPIVGDYKYGWQTHRNWKPLAWSNNECHS 403

Query: 1079 QDKSPKPVIDPFDLDLESGSLSDKQWRLHLHCKEMVLPNIHATLQHAKMITD---CSFEE 1249
             ++ PK    PFDL++ESGS+S+K  RLHLHCK+MVLPN++  LQ+ K+ +D      E 
Sbjct: 404  DEEFPKTKNLPFDLNMESGSVSEKNPRLHLHCKQMVLPNVNLALQNVKLHSDSDLSELES 463

Query: 1250 LKFEAPLPSHMQQSWDIFHS 1309
            L+  APLPS MQ+SW+I +S
Sbjct: 464  LELVAPLPSFMQRSWNITNS 483


>XP_016722007.1 PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like
            [Gossypium hirsutum]
          Length = 479

 Score =  468 bits (1203), Expect = e-158
 Identities = 238/429 (55%), Positives = 309/429 (72%), Gaps = 20/429 (4%)
 Frame = +2

Query: 83   KKEEGWYRLPEFRLSIDGASVGKAIANSNNITTNPSA---------IKWVFRCCPELPTS 235
            KKE  W+ LP F  ++  + +G  +A  N++ +  SA         +KWV +CCPELP +
Sbjct: 52   KKESKWFTLPPFAKTVSASELGAKLARKNHLKSATSAETSAYKTTALKWVLKCCPELPRN 111

Query: 236  LVHKLFRLRQVRKQSCHFHLDNP-------KLNRVAAKDSLEVGDRIFLPISVQKILPLE 394
            LV KLFRLRQVR++S    + +        +L RV AKDSL +GD+IFLPISV+++ P E
Sbjct: 112  LVQKLFRLRQVRRESIAMEVTDDGCQVQKIQLKRVGAKDSLNIGDKIFLPISVREV-PEE 170

Query: 395  PKVLVFNDEEMKFIRSLLLYKDSAVIVINKPPGLPVQGGIGIKKSIDNLATKYLKYEYQD 574
                   +EE  FIRSL LYKD+A+IV+NKPPG+PVQGGIGIK S+D LA  +L+Y+Y +
Sbjct: 171  KHEHDCTNEESNFIRSLELYKDTAIIVLNKPPGMPVQGGIGIKWSLDELAAAWLRYDYSE 230

Query: 575  SPRLVHRLDRDCSGVLVMGRTQLTASALHSIFREKTSALSNGDINHKKQIIQKKYWALVI 754
            SPRLVHRLDRDCSG+LVMGRTQ++A+ LHS+FRE+T   S  D +++K+++QK+YWALVI
Sbjct: 231  SPRLVHRLDRDCSGILVMGRTQMSAAILHSVFREETLGASKHDSDNEKRVLQKRYWALVI 290

Query: 755  GSPRRDKGLISAPLGKVIVGDGKSELIQI-RDNIESSGAQYAVTEYRVIGSSNHGFTWLE 931
            GSPRR KG ISAPL KV+V DGKS+ I +   N     +Q A+TEYRVI +S HGFTWLE
Sbjct: 291  GSPRRPKGTISAPLRKVVVDDGKSDRITVFEHNNTILSSQRAITEYRVIKTSTHGFTWLE 350

Query: 932  LCPLTGRKHQLRVHCAEFLGTPIVGDFKYGWQAHRNLEHLSCIARSVSQQDKSPKPVIDP 1111
            L PLTGRKHQLRVHCAE LGTPIVGD+KYGWQAHR L++L+      +  +K  K  + P
Sbjct: 351  LSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRRLQNLAESDLRKNSNEKVAKENMLP 410

Query: 1112 FDLDLESGSLSDKQWRLHLHCKEMVLPNIHATLQHAKMITDCSFEELK---FEAPLPSHM 1282
            F L+++SGS+ +KQ RLHLHC+EM+LPN+   LQ+ K  TD    +LK     APLPS+M
Sbjct: 411  FGLNMDSGSILEKQLRLHLHCREMILPNVSQVLQNPKSFTDDDLSKLKSLEIVAPLPSYM 470

Query: 1283 QQSWDIFHS 1309
            Q+SWDI +S
Sbjct: 471  QKSWDILNS 479