BLASTX 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum23_contig00005797
         (1772 letters)

Database: ./nr 
           115,041,592 sequences; 42,171,959,267 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GAU26746.1 hypothetical protein TSUD_317440 [Trifolium subterran...   352   e-162
CAN65188.1 hypothetical protein VITISV_004365 [Vitis vinifera]        332   e-161
KYP74877.1 Retrovirus-related Pol polyprotein from transposon TN...   348   e-158
GAU51371.1 hypothetical protein TSUD_247260 [Trifolium subterran...   367   e-154
JAU80060.1 Retrovirus-related Pol polyprotein from transposon TN...   333   e-150
GAU36545.1 hypothetical protein TSUD_277510 [Trifolium subterran...   352   e-145
KYP63625.1 Retrovirus-related Pol polyprotein from transposon TN...   352   e-141
GAU44223.1 hypothetical protein TSUD_399870 [Trifolium subterran...   322   e-140
GAU27637.1 hypothetical protein TSUD_125830 [Trifolium subterran...   308   e-138
CAN72600.1 hypothetical protein VITISV_036712 [Vitis vinifera]        242   e-137
CAN79845.1 hypothetical protein VITISV_027568 [Vitis vinifera]        281   e-134
CAN81839.1 hypothetical protein VITISV_033739 [Vitis vinifera]        241   e-133
GAU15733.1 hypothetical protein TSUD_235460 [Trifolium subterran...   360   e-122
GAU43961.1 hypothetical protein TSUD_283880 [Trifolium subterran...   361   e-122
KYP43087.1 Retrovirus-related Pol polyprotein from transposon TN...   376   e-122
GAU47763.1 hypothetical protein TSUD_193000 [Trifolium subterran...   370   e-117
KYP57183.1 Retrovirus-related Pol polyprotein from transposon TN...   370   e-114
GAU16533.1 hypothetical protein TSUD_167640 [Trifolium subterran...   374   e-114
GAU51653.1 hypothetical protein TSUD_414750 [Trifolium subterran...   367   e-113
JAU09122.1 Retrovirus-related Pol polyprotein from transposon TN...   351   e-113

>GAU26746.1 hypothetical protein TSUD_317440 [Trifolium subterraneum]
          Length = 1608

 Score =  352 bits (904), Expect(3) = e-162
 Identities = 161/289 (55%), Positives = 217/289 (75%)
 Frame = +1

Query: 1    QAMLWHQRYVHLNFKGLKTLKDKEMVSGLPKFKTQEITCADCLNGKQTRNSMPKHNNWRA 180
            +  LWH R+ HLN+KGL TL +K+MV GLP  K+ +  C  CL GKQ R S+PK ++WRA
Sbjct: 432  ETQLWHSRFGHLNYKGLNTLSNKKMVIGLPSLKSPKKICTTCLIGKQHRESIPKKSSWRA 491

Query: 181  SKVLELIHSDICGPINPVSSTGKKYFLTFINDFSRKGWVFLLTNKSEAFNCFKEFKHSVE 360
            SK L+L+H+DICGPI P S++ K+Y L+FI+DF+RK W++ L  KSEAF  FK FK  VE
Sbjct: 492  SKKLQLVHADICGPITPSSNSNKRYILSFIDDFTRKAWIYFLHEKSEAFGRFKNFKACVE 551

Query: 361  KESGEVIKSLRTDRGGEYLSDAFIEYCKNYGIKRQLTTTYTPQQNRVAERRNRTIMNMVR 540
            KE G  I  LRTDRGGE++S+ F E+CK+ GI RQLT +YTPQQN VAER+NRTIMN VR
Sbjct: 552  KEVGAFITCLRTDRGGEFISNEFEEFCKDQGICRQLTASYTPQQNGVAERKNRTIMNAVR 611

Query: 541  SLLSTKKMPKFLWTEAVVWSVNVLNRCPTLSVKEKTPQEAWNGKKPVVDHMKVWGCIAHA 720
            ++L+ +++P+  W EAV W V+V NR PT +V   TP+EAW G +P VD+ +++GC+AHA
Sbjct: 612  AVLNERQVPRVFWPEAVKWCVHVQNRSPTSAVDHITPEEAWTGVRPSVDYFRIFGCVAHA 671

Query: 721  HVPKVNRGKLDNRSVKCVLLGMSEGTKGYRLYNTETKKIIITKDVVFEE 867
            HVP   R KLD++S +CV LG+S+ +K Y+L++   KK+I+ +DVVFEE
Sbjct: 672  HVPDQKRSKLDDKSKRCVFLGVSDESKAYKLFDPIEKKVIVNRDVVFEE 720



 Score =  146 bits (369), Expect(3) = e-162
 Identities = 63/96 (65%), Positives = 87/96 (90%)
 Frame = +1

Query: 1483 RMDTVRLIISIAAQKGWKLYQLDVKSAFLYGELEEEVYIEQPRGYEKKGEEHKVYKLHEV 1662
            R+DTVR+++++AAQ+GW+++QLDVKSAFL+GEL+EEV+++QP G+ KKGEE+KVYKL + 
Sbjct: 916  RLDTVRVLLALAAQRGWEVFQLDVKSAFLHGELKEEVFVQQPEGFVKKGEENKVYKLKKA 975

Query: 1663 LYGLKQAPRAWFSKIERHFLNEGFQECTSENTLFTK 1770
            LYGLKQAPRAW++KIE +F  E F+ C+SE+TLFTK
Sbjct: 976  LYGLKQAPRAWYNKIEAYFAKENFERCSSEHTLFTK 1011



 Score =  124 bits (312), Expect(3) = e-162
 Identities = 77/207 (37%), Positives = 111/207 (53%), Gaps = 4/207 (1%)
 Frame = +3

Query: 873  AFDWEKEHEKQIEAELEWEDDMLAKEVTQLHQNGNIDHEDNQKGNQEXXXXXXXXXXXXX 1052
            ++DW +  E+     L+WE++   +E  + H     + E++   NQ              
Sbjct: 723  SWDWGRTEEECKVDVLDWEEN---EEDGEDHGTAQNEEENSGDINQGASPSSL------- 772

Query: 1053 XXXXGNDQGRAINTKIQTSQDG-QSSKRTHKRPAWMTDYESGNELSDDEVNLVQVEED-- 1223
                 N  G   N      Q+  + + R+ +RP W+ D+E    LS++E  +V +  +  
Sbjct: 773  -----NKTGSPTNETNDVEQEFLERAARSRRRPGWLVDFEEDPNLSEEESLMVMMTAENG 827

Query: 1224 -DLVYFEATVKSVKLREAMDMEISSIVKNNTWSLTELPQKSKKIRVKWIYKIKKDENGVV 1400
             D   FE   KS K REAM+ME+ +I KN TW LT+ P+  K I VKWI+K K +E+G V
Sbjct: 828  SDPYLFEEAFKSAKWREAMNMEMKAIEKNKTWVLTDAPRGVKPIGVKWIFKTKLNESGKV 887

Query: 1401 IKHKARLVAKGYAQKEGIDYNEVFAPV 1481
             K KARLVAKGYAQ+ G+DY EVFAPV
Sbjct: 888  EKFKARLVAKGYAQQYGVDYTEVFAPV 914


>CAN65188.1 hypothetical protein VITISV_004365 [Vitis vinifera]
          Length = 1265

 Score =  332 bits (851), Expect(3) = e-161
 Identities = 163/286 (56%), Positives = 204/286 (71%)
 Frame = +1

Query: 10   LWHQRYVHLNFKGLKTLKDKEMVSGLPKFKTQEITCADCLNGKQTRNSMPKHNNWRASKV 189
            LWH RY HL+FKGLKTL+ K+MV+GLP+ K+    C DCL GKQ R S P  + WRAS++
Sbjct: 412  LWHCRYGHLSFKGLKTLQQKKMVNGLPQLKSPLRLCKDCLVGKQQRYSFPWKSTWRASQI 471

Query: 190  LELIHSDICGPINPVSSTGKKYFLTFINDFSRKGWVFLLTNKSEAFNCFKEFKHSVEKES 369
            L L+H+DI GPI P+S++ K+Y +TF +DFSRK WV+ L  KSEAF  FK FK  VEKE+
Sbjct: 472  LXLVHADIXGPIKPISNSKKRYLITFTDDFSRKTWVYFLIEKSEAFVVFKRFKIHVEKET 531

Query: 370  GEVIKSLRTDRGGEYLSDAFIEYCKNYGIKRQLTTTYTPQQNRVAERRNRTIMNMVRSLL 549
               I++L TDRGGE+ S  F  +C   GI+RQLT  YTPQQN V ER+NRTIMNMVRS++
Sbjct: 532  NSFIRALXTDRGGEFTSXEFTNFCDVNGIRRQLTAAYTPQQNXVXERKNRTIMNMVRSMI 591

Query: 550  STKKMPKFLWTEAVVWSVNVLNRCPTLSVKEKTPQEAWNGKKPVVDHMKVWGCIAHAHVP 729
            S KK+PK  W EAV W+V+VLNR PTL+V+ KTP EAW+G KP V+H +V+GCI+H HVP
Sbjct: 592  SEKKIPKPFWPEAVNWTVHVLNRSPTLAVQNKTPXEAWSGVKPSVEHFRVFGCISHVHVP 651

Query: 730  KVNRGKLDNRSVKCVLLGMSEGTKGYRLYNTETKKIIITKDVVFEE 867
               R KLD++S+ CVLLG+SEG                  DVVFEE
Sbjct: 652  DNKRTKLDDKSLSCVLLGVSEG------------------DVVFEE 679



 Score =  152 bits (385), Expect(3) = e-161
 Identities = 85/204 (41%), Positives = 119/204 (58%), Gaps = 2/204 (0%)
 Frame = +3

Query: 876  FDWEKEHEKQIEAELEWEDDMLAKEVTQLHQNGNIDHEDNQKGNQEXXXXXXXXXXXXXX 1055
            +DW+K +EK I  +LEW D  L +E T   +N     E+  + + E              
Sbjct: 683  WDWDKTYEKSIVCDLEWGD--LEEEATMFDEN-----EEGTESDLEADIE---------- 725

Query: 1056 XXXGNDQGRAINTKIQTSQDGQSSKRTHKRPAWMTDYESGNELS--DDEVNLVQVEEDDL 1229
                 +   + ++  + S    +++R  + PAWM DY+ G  LS  D+E +L      D 
Sbjct: 726  ---AEEDNFSSDSLTEDSSPSSTAERIRRPPAWMRDYDIGEGLSEEDNEAHLAMFAAADP 782

Query: 1230 VYFEATVKSVKLREAMDMEISSIVKNNTWSLTELPQKSKKIRVKWIYKIKKDENGVVIKH 1409
            ++FE  VKS K ++AMD+E+++I KN TW LTELP+  KKI VKWIYK K +ENG V K+
Sbjct: 783  IHFEDAVKSEKWKKAMDLELAAINKNGTWELTELPEGGKKIGVKWIYKTKFNENGEVDKY 842

Query: 1410 KARLVAKGYAQKEGIDYNEVFAPV 1481
            KARLVAKGY Q+ G+DY EVFAPV
Sbjct: 843  KARLVAKGYTQQHGVDYTEVFAPV 866



 Score =  138 bits (347), Expect(3) = e-161
 Identities = 61/96 (63%), Positives = 80/96 (83%)
 Frame = +1

Query: 1483 RMDTVRLIISIAAQKGWKLYQLDVKSAFLYGELEEEVYIEQPRGYEKKGEEHKVYKLHEV 1662
            RM+T+RL++++AAQ+ W +YQLDVKSAFL+GEL EEV++EQP GY +KG E KVYKL + 
Sbjct: 868  RMETIRLVVALAAQRKWTIYQLDVKSAFLHGELNEEVFVEQPCGYVQKGHEQKVYKLKKA 927

Query: 1663 LYGLKQAPRAWFSKIERHFLNEGFQECTSENTLFTK 1770
            LYGLKQAP AW+S IE +F+ EGF++C  E+TLF K
Sbjct: 928  LYGLKQAPXAWYSXIEAYFMKEGFEKCDYEHTLFIK 963


>KYP74877.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 1232

 Score =  348 bits (894), Expect(3) = e-158
 Identities = 166/288 (57%), Positives = 215/288 (74%)
 Frame = +1

Query: 4    AMLWHQRYVHLNFKGLKTLKDKEMVSGLPKFKTQEITCADCLNGKQTRNSMPKHNNWRAS 183
            + LWH R  HL++ GLKTL  K+MV+GL    T +  C  CL GKQ RN+MPK + WRAS
Sbjct: 332  SQLWHNRLGHLSYDGLKTLVSKQMVTGLSAIITPQEICTHCLAGKQHRNTMPKKSLWRAS 391

Query: 184  KVLELIHSDICGPINPVSSTGKKYFLTFINDFSRKGWVFLLTNKSEAFNCFKEFKHSVEK 363
            K L+LIH+D+CGPI P S++ KKY L+FI+D SRK WV+ L+ KSE F+ FK FK  VEK
Sbjct: 392  KRLQLIHADLCGPIQPTSNSNKKYILSFIDDLSRKTWVYFLSEKSETFSLFKGFKALVEK 451

Query: 364  ESGEVIKSLRTDRGGEYLSDAFIEYCKNYGIKRQLTTTYTPQQNRVAERRNRTIMNMVRS 543
            E+GE I  LRTDRGGE+ S AF E+C++ GIKRQLT  YTPQQN VAER+NRTIMNMVRS
Sbjct: 452  EAGESIICLRTDRGGEFSSKAFEEFCRSQGIKRQLTAAYTPQQNGVAERKNRTIMNMVRS 511

Query: 544  LLSTKKMPKFLWTEAVVWSVNVLNRCPTLSVKEKTPQEAWNGKKPVVDHMKVWGCIAHAH 723
            +L  +++PK  W EA  W V++LNR PT  V+++TP+EAW+G KP V + +V+GC+AH H
Sbjct: 512  MLIGRQVPKIFWPEATKWCVHILNRSPTAVVQDQTPEEAWSGVKPSVGYFRVFGCLAHVH 571

Query: 724  VPKVNRGKLDNRSVKCVLLGMSEGTKGYRLYNTETKKIIITKDVVFEE 867
                 R KLD++S +CVL G+S+ +K YRL++   KKIII+KDV+FEE
Sbjct: 572  TLDQQRIKLDDKSKQCVLFGVSDESKAYRLFDPVNKKIIISKDVIFEE 619



 Score =  138 bits (348), Expect(3) = e-158
 Identities = 60/96 (62%), Positives = 82/96 (85%)
 Frame = +1

Query: 1483 RMDTVRLIISIAAQKGWKLYQLDVKSAFLYGELEEEVYIEQPRGYEKKGEEHKVYKLHEV 1662
            ++DT+R+I+S+AAQ GW ++QLDVKSAFL+GEL+EE+Y++QP  + KKG+E KVYKL + 
Sbjct: 810  KVDTIRIILSMAAQNGWIIFQLDVKSAFLHGELKEEIYVQQPAEFIKKGKEEKVYKLRKA 869

Query: 1663 LYGLKQAPRAWFSKIERHFLNEGFQECTSENTLFTK 1770
            LYGLKQAPRAW+++IE +FL  GF+ C  E+TLFTK
Sbjct: 870  LYGLKQAPRAWYNRIEAYFLQNGFERCFCEHTLFTK 905



 Score =  124 bits (311), Expect(3) = e-158
 Identities = 78/205 (38%), Positives = 108/205 (52%), Gaps = 2/205 (0%)
 Frame = +3

Query: 873  AFDWEKEH-EKQIEAELEWEDDMLAKEVTQLHQNGNIDHEDNQKGNQEXXXXXXXXXXXX 1049
            +++WE+   E Q+E  +EWE+          H+  + + +   K N E            
Sbjct: 622  SWNWEQNKAENQLEI-VEWEE----------HEGNSTEIQFEDKSNNEEQQGTESQSAGT 670

Query: 1050 XXXXXGNDQGRAINTKIQTSQDGQSSKRTHKRPAWMTDYESGNELSD-DEVNLVQVEEDD 1226
                  + Q   I TK +       ++R  + P WMTDYE G  LS  +  + + V E D
Sbjct: 671  NVRNKSHTQILEIPTKGR-------ARRHRREPVWMTDYEKGEGLSYINNTSAMLVTETD 723

Query: 1227 LVYFEATVKSVKLREAMDMEISSIVKNNTWSLTELPQKSKKIRVKWIYKIKKDENGVVIK 1406
             V  E  VKS K R+AM  E+ +I +N TW LT++P+  K I VKW++K K  ENG + K
Sbjct: 724  PVTVEEAVKSKKWRDAMVKEMEAIERNQTWELTDVPKGVKPIGVKWVFKTKHKENGEIDK 783

Query: 1407 HKARLVAKGYAQKEGIDYNEVFAPV 1481
             KARLVAKGYAQ  G+DY EVFAPV
Sbjct: 784  FKARLVAKGYAQHYGVDYTEVFAPV 808


>GAU51371.1 hypothetical protein TSUD_247260 [Trifolium subterraneum]
          Length = 1980

 Score =  367 bits (942), Expect(3) = e-154
 Identities = 176/288 (61%), Positives = 218/288 (75%)
 Frame = +1

Query: 4    AMLWHQRYVHLNFKGLKTLKDKEMVSGLPKFKTQEITCADCLNGKQTRNSMPKHNNWRAS 183
            A LWH+R+ HL++KGLKTL+ K MV GLP F   EI C +CL GKQ R+ + + + WRAS
Sbjct: 430  AHLWHRRFGHLSYKGLKTLQTKNMVRGLPSFSVGEIVCTNCLKGKQHRDVISRRSTWRAS 489

Query: 184  KVLELIHSDICGPINPVSSTGKKYFLTFINDFSRKGWVFLLTNKSEAFNCFKEFKHSVEK 363
            + LEL+H+DICGPI+P S   K+YF+ FI+D+SRK WV+ L  KS+AF  FK FK  VEK
Sbjct: 490  EKLELVHADICGPISPFSEGNKRYFICFIDDYSRKAWVYFLAYKSDAFTTFKLFKALVEK 549

Query: 364  ESGEVIKSLRTDRGGEYLSDAFIEYCKNYGIKRQLTTTYTPQQNRVAERRNRTIMNMVRS 543
            E+G  IK LRTDRGGE+ S+ F EYCK  GIKRQLT  YTPQQN VAER+NRT+MNMVRS
Sbjct: 550  ETGLSIKCLRTDRGGEFTSNEFKEYCKMNGIKRQLTVAYTPQQNGVAERKNRTVMNMVRS 609

Query: 544  LLSTKKMPKFLWTEAVVWSVNVLNRCPTLSVKEKTPQEAWNGKKPVVDHMKVWGCIAHAH 723
            LL  K +P+  W EAV W+  VLNRCPT SVKE TP EAW G KP V H++V+GCIA+AH
Sbjct: 610  LLVEKNVPRKFWVEAVNWAFYVLNRCPTSSVKEMTPVEAWYGMKPSVGHLRVFGCIAYAH 669

Query: 724  VPKVNRGKLDNRSVKCVLLGMSEGTKGYRLYNTETKKIIITKDVVFEE 867
            VP   R KL+++S  CVL G+SE +K YRLY+  +K+III++DVVFEE
Sbjct: 670  VPDARRTKLEDKSRCCVLFGVSEESKAYRLYDPTSKRIIISRDVVFEE 717



 Score =  139 bits (351), Expect(3) = e-154
 Identities = 78/207 (37%), Positives = 110/207 (53%), Gaps = 5/207 (2%)
 Frame = +3

Query: 876  FDWEKEHEKQIEAELEWEDDMLAKEVTQLHQNGNIDHEDNQKGNQEXXXXXXXXXXXXXX 1055
            ++WEK+ E+  + + EWED+             + + E++  GN+E              
Sbjct: 721  WNWEKKSEEDNKFDTEWEDEK------------SEEREESSDGNEEENATDG-------- 760

Query: 1056 XXXGNDQGRAINTKIQTSQDGQSSKRTHKRPAWMTDYESGNELSDDEVN-----LVQVEE 1220
                 D+      + + +    +  R  + P W+ DY SG  LSD+EV            
Sbjct: 761  ---NEDENATDGNEDENTASPVTEHRNRRAPGWVNDYVSGEGLSDEEVQTQLVLFAHAVH 817

Query: 1221 DDLVYFEATVKSVKLREAMDMEISSIVKNNTWSLTELPQKSKKIRVKWIYKIKKDENGVV 1400
             D   F+  VK VK R AMD E+ SI KN TW LTELP++++KI VKW+YK K +E G V
Sbjct: 818  SDPTSFDEAVKEVKWRAAMDAEMKSIEKNGTWDLTELPKEARKIGVKWVYKTKLNELGEV 877

Query: 1401 IKHKARLVAKGYAQKEGIDYNEVFAPV 1481
             K+KARLVAKGYAQ+ G+DY EV+APV
Sbjct: 878  EKYKARLVAKGYAQEYGVDYEEVYAPV 904



 Score = 90.5 bits (223), Expect(3) = e-154
 Identities = 39/59 (66%), Positives = 52/59 (88%)
 Frame = +1

Query: 1483 RMDTVRLIISIAAQKGWKLYQLDVKSAFLYGELEEEVYIEQPRGYEKKGEEHKVYKLHE 1659
            RMDTVR+I+++AAQ+GW ++Q DVKSAFL+G+L E VY+EQPRGYE K EEHK Y+L++
Sbjct: 906  RMDTVRMILALAAQRGWCVFQQDVKSAFLHGKLAENVYVEQPRGYEIKNEEHKAYRLYD 964



 Score =  145 bits (367), Expect(3) = 3e-72
 Identities = 67/96 (69%), Positives = 83/96 (86%)
 Frame = +1

Query: 1483 RMDTVRLIISIAAQKGWKLYQLDVKSAFLYGELEEEVYIEQPRGYEKKGEEHKVYKLHEV 1662
            RMDTVR+I+++AAQ+GW ++QLDVKS FL+G+L E VY+EQPRGYE K EEHKVYKL++ 
Sbjct: 1178 RMDTVRMILALAAQRGWCVFQLDVKSTFLHGKLAENVYVEQPRGYEIKNEEHKVYKLNKA 1237

Query: 1663 LYGLKQAPRAWFSKIERHFLNEGFQECTSENTLFTK 1770
            LYGLKQAPRAWFS+IE +F  EGF++  SE TLFTK
Sbjct: 1238 LYGLKQAPRAWFSRIESYFRKEGFEKEDSEQTLFTK 1273



 Score =  142 bits (357), Expect(3) = 3e-72
 Identities = 79/208 (37%), Positives = 114/208 (54%), Gaps = 6/208 (2%)
 Frame = +3

Query: 876  FDWEKEHEKQIEAELEWEDDMLAKEVTQLHQNGNIDHEDNQ-KGNQEXXXXXXXXXXXXX 1052
            ++WEK+ E+    + EWED+    +  +  ++ +++ E+N  +GN+E             
Sbjct: 984  WNWEKKSEEDNNFDTEWEDE----KSEEREESSDVNEEENAAEGNEEENATDG------- 1032

Query: 1053 XXXXGNDQGRAINTKIQTSQDGQSSKRTHKRPAWMTDYESGNELSDDEVN-----LVQVE 1217
                  D+      + + +    +  R  + P W  DY SG  LSD+EV           
Sbjct: 1033 ----NEDENATDGNEDENTASPVTEHRNRRAPGWTNDYVSGEGLSDEEVQTQLVLFAHAV 1088

Query: 1218 EDDLVYFEATVKSVKLREAMDMEISSIVKNNTWSLTELPQKSKKIRVKWIYKIKKDENGV 1397
              D   F+  VK VK R AMD E+ SI KN TW LTELP++++KI VKW+YK K +E G 
Sbjct: 1089 HSDPTSFDEAVKEVKWRAAMDAEMKSIEKNGTWDLTELPKEARKIGVKWVYKTKLNELGE 1148

Query: 1398 VIKHKARLVAKGYAQKEGIDYNEVFAPV 1481
            V K+KARLVAKGYAQ+ G+DY EV+APV
Sbjct: 1149 VEKYKARLVAKGYAQEYGVDYEEVYAPV 1176



 Score = 36.2 bits (82), Expect(3) = 3e-72
 Identities = 16/27 (59%), Positives = 22/27 (81%)
 Frame = +1

Query: 787  SEGTKGYRLYNTETKKIIITKDVVFEE 867
            +E  K YRLY+  +K+III++DVVFEE
Sbjct: 954  NEEHKAYRLYDPTSKRIIISRDVVFEE 980


>JAU80060.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Noccaea
            caerulescens] JAU98220.1 Retrovirus-related Pol
            polyprotein from transposon TNT 1-94 [Noccaea
            caerulescens]
          Length = 1165

 Score =  333 bits (855), Expect(3) = e-150
 Identities = 155/288 (53%), Positives = 215/288 (74%), Gaps = 2/288 (0%)
 Frame = +1

Query: 10   LWHQRYVHLNFKGLKTLKDKEMVSGLPKFKTQE--ITCADCLNGKQTRNSMPKHNNWRAS 183
            LWH+R+ HLN KGL++L DK+MV+GLPKF  +E    C  CL GKQ R S+P+ + W+++
Sbjct: 434  LWHKRFGHLNHKGLRSLADKKMVNGLPKFTHEEEIAVCEICLKGKQIRESIPRESLWKST 493

Query: 184  KVLELIHSDICGPINPVSSTGKKYFLTFINDFSRKGWVFLLTNKSEAFNCFKEFKHSVEK 363
            +VL+L+H+DICGPINP S +GK+Y L FI+DFSRK W +LL+ KSE F  FKEF+   E+
Sbjct: 494  QVLQLVHTDICGPINPTSESGKRYILNFIDDFSRKCWTYLLSEKSETFQFFKEFQAETER 553

Query: 364  ESGEVIKSLRTDRGGEYLSDAFIEYCKNYGIKRQLTTTYTPQQNRVAERRNRTIMNMVRS 543
            ESG+ +  LR+DRGGEY S  F E+CK +GIKRQLT  YTPQQN VAER+NR++MNM R 
Sbjct: 554  ESGQKLICLRSDRGGEYNSREFEEHCKEFGIKRQLTAAYTPQQNGVAERKNRSVMNMTRC 613

Query: 544  LLSTKKMPKFLWTEAVVWSVNVLNRCPTLSVKEKTPQEAWNGKKPVVDHMKVWGCIAHAH 723
            +L    +P+  W EAV ++V VLNR P+ ++ + TP+E W+  KP V+H+K++G +A+A 
Sbjct: 614  MLMEMSVPRKFWPEAVQYAVYVLNRSPSKALNDITPEEMWSNWKPSVEHLKIFGSLAYAL 673

Query: 724  VPKVNRGKLDNRSVKCVLLGMSEGTKGYRLYNTETKKIIITKDVVFEE 867
            VP   R KLD +S+KCV+ G+S+ +K YRLY  +T KI+I++DV F+E
Sbjct: 674  VPYQRRIKLDEKSIKCVMFGVSKESKAYRLYEPDTGKILISRDVHFDE 721



 Score =  135 bits (340), Expect(3) = e-150
 Identities = 60/96 (62%), Positives = 81/96 (84%)
 Frame = +1

Query: 1483 RMDTVRLIISIAAQKGWKLYQLDVKSAFLYGELEEEVYIEQPRGYEKKGEEHKVYKLHEV 1662
            + DT+RLI+++AA+K WK++QLDVKSAFL G+LEE+V++EQP+G+E + E  KVYKL + 
Sbjct: 909  KWDTIRLILALAAEKEWKIFQLDVKSAFLQGDLEEDVFVEQPKGFEVEDESSKVYKLKKA 968

Query: 1663 LYGLKQAPRAWFSKIERHFLNEGFQECTSENTLFTK 1770
            LYGLKQAPRAW+S+IE +F  EGFQ+C  E+TLF K
Sbjct: 969  LYGLKQAPRAWYSRIEGYFEKEGFQKCYCEHTLFVK 1004



 Score =  115 bits (288), Expect(3) = e-150
 Identities = 75/205 (36%), Positives = 107/205 (52%), Gaps = 5/205 (2%)
 Frame = +3

Query: 882  WEKEHEKQIEAELEWEDDMLAKEVTQLHQNGNIDHEDNQKGNQEXXXXXXXXXXXXXXXX 1061
            WE E +K +E EL W DD  +K   +     N + +   +G +E                
Sbjct: 725  WEWE-DKLLEQELVW-DDSESKPAEEAVPETNHNEQQVPEGIEEEAIEEET--------- 773

Query: 1062 XGNDQGRAINTKIQTSQDGQSSKRTHKRPAWMTDYESGNEL-----SDDEVNLVQVEEDD 1226
              + Q   + T++          R  + P WM DY +GN        +DE+  + +  DD
Sbjct: 774  --HQQPPPVETRVG---------RQRQHPVWMKDYVTGNAKILITEEEDEILALFIGPDD 822

Query: 1227 LVYFEATVKSVKLREAMDMEISSIVKNNTWSLTELPQKSKKIRVKWIYKIKKDENGVVIK 1406
              YFE  V+    ++AM+ EI+SI +NNTW L ELP+ +K I +KWI+K K +E G V K
Sbjct: 823  PEYFEDAVELDVWKKAMEAEITSIEENNTWELMELPEGAKVIGLKWIFKTKFNEKGEVDK 882

Query: 1407 HKARLVAKGYAQKEGIDYNEVFAPV 1481
             KARLVAKGY Q+ G+D+ EVFAPV
Sbjct: 883  FKARLVAKGYHQRYGVDFYEVFAPV 907


>GAU36545.1 hypothetical protein TSUD_277510 [Trifolium subterraneum]
          Length = 1139

 Score =  352 bits (903), Expect(3) = e-145
 Identities = 163/289 (56%), Positives = 217/289 (75%)
 Frame = +1

Query: 4    AMLWHQRYVHLNFKGLKTLKDKEMVSGLPKFKTQEITCADCLNGKQTRNSMPKHNNWRAS 183
            + LWH RY HL+ KGL TL   +MV GLP  +     C DCL GKQ R  +PK   WRAS
Sbjct: 380  SQLWHMRYGHLSIKGLNTLVKMDMVRGLPDLEDFSEKCIDCLTGKQHREVIPKQAKWRAS 439

Query: 184  KVLELIHSDICGPINPVSSTGKKYFLTFINDFSRKGWVFLLTNKSEAFNCFKEFKHSVEK 363
              L+L+HSDICGPINP S+ G +YF+TF +D +RK WV+ L  KS AF+ F  FK  VEK
Sbjct: 440  VKLDLVHSDICGPINPTSNGGNRYFITFTDDLTRKTWVYFLKEKSSAFDTFNNFKILVEK 499

Query: 364  ESGEVIKSLRTDRGGEYLSDAFIEYCKNYGIKRQLTTTYTPQQNRVAERRNRTIMNMVRS 543
            ESG V++ LRTDRGGE++S AF E+C+N+GIKRQLTTTYTPQQN V++R+NRT+M++VRS
Sbjct: 500  ESGCVVQCLRTDRGGEFVSTAFDEFCRNHGIKRQLTTTYTPQQNGVSKRKNRTLMDIVRS 559

Query: 544  LLSTKKMPKFLWTEAVVWSVNVLNRCPTLSVKEKTPQEAWNGKKPVVDHMKVWGCIAHAH 723
            +++ K +PK  W EAV W+ +++NR  TLSVK  TP+EAW+G KP V H +++GCIA+AH
Sbjct: 560  MIAGKNVPKVFWPEAVKWATHIMNRSSTLSVKNITPKEAWSGVKPSVTHFRIFGCIAYAH 619

Query: 724  VPKVNRGKLDNRSVKCVLLGMSEGTKGYRLYNTETKKIIITKDVVFEEQ 870
            VP   R KLD++SV CV LG+S+ +K Y+LY+ + K+I+I +DVVF+E+
Sbjct: 620  VPDSQRTKLDDKSVMCVHLGVSDESKAYKLYDPKKKRIMINRDVVFDER 668



 Score =  118 bits (296), Expect(3) = e-145
 Identities = 70/204 (34%), Positives = 97/204 (47%), Gaps = 1/204 (0%)
 Frame = +3

Query: 873  AFDWEKEHEKQI-EAELEWEDDMLAKEVTQLHQNGNIDHEDNQKGNQEXXXXXXXXXXXX 1049
            A+DW  E  K + +      DD     + + +Q       + +  N+             
Sbjct: 670  AWDWNNEGNKSVNQGTSNGIDDDTKANIVETNQANTQAINEKEINNEAENTLDQSDGKMY 729

Query: 1050 XXXXXGNDQGRAINTKIQTSQDGQSSKRTHKRPAWMTDYESGNELSDDEVNLVQVEEDDL 1229
                  +D+G ++          Q   R  K PA + DY  G++L D     + V  DD 
Sbjct: 730  VENTSSDDEGESV----------QLPPRIRKTPAKLGDYVIGSQLDDQHNLAIYVPSDDS 779

Query: 1230 VYFEATVKSVKLREAMDMEISSIVKNNTWSLTELPQKSKKIRVKWIYKIKKDENGVVIKH 1409
              F+   K    R+AMD E+ +I  NNTW LT LP  +  I VKWIYK K +E G + KH
Sbjct: 780  KSFDEAEKMEIWRKAMDQEMEAIENNNTWQLTTLPHGANVIGVKWIYKTKYNEKGEIEKH 839

Query: 1410 KARLVAKGYAQKEGIDYNEVFAPV 1481
            KARLV K Y+QK G+DYN+VFAPV
Sbjct: 840  KARLVVKRYSQKHGVDYNDVFAPV 863



 Score = 97.4 bits (241), Expect(3) = e-145
 Identities = 45/70 (64%), Positives = 57/70 (81%)
 Frame = +1

Query: 1483 RMDTVRLIISIAAQKGWKLYQLDVKSAFLYGELEEEVYIEQPRGYEKKGEEHKVYKLHEV 1662
            R +T+R I+++A  K WK+YQLDVKSAFL+GEL E++Y+EQP GY+ KG   KVYKL + 
Sbjct: 865  RWETIRAILALAPNKNWKVYQLDVKSAFLHGELNEDIYVEQPLGYQ-KGNGDKVYKLRKA 923

Query: 1663 LYGLKQAPRA 1692
            LYGLKQAPRA
Sbjct: 924  LYGLKQAPRA 933


>KYP63625.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 930

 Score =  352 bits (902), Expect(3) = e-141
 Identities = 168/288 (58%), Positives = 218/288 (75%)
 Frame = +1

Query: 4    AMLWHQRYVHLNFKGLKTLKDKEMVSGLPKFKTQEITCADCLNGKQTRNSMPKHNNWRAS 183
            A LWH R+ HL+FKGL+TL+ K MV GL   K     C D L GKQ R+S P  ++WRAS
Sbjct: 406  AQLWHCRFGHLSFKGLQTLQQKGMVEGLAMLKPPSKLCKDYLIGKQHRDSFPMKSSWRAS 465

Query: 184  KVLELIHSDICGPINPVSSTGKKYFLTFINDFSRKGWVFLLTNKSEAFNCFKEFKHSVEK 363
            ++L+L+H+DICGPI PVS++ K+Y LTFI+DFSRK WV+ L  KSEAF  FK FK  VEK
Sbjct: 466  QILQLVHADICGPIKPVSNSKKRYLLTFIDDFSRKTWVYFLAEKSEAFTVFKSFKLHVEK 525

Query: 364  ESGEVIKSLRTDRGGEYLSDAFIEYCKNYGIKRQLTTTYTPQQNRVAERRNRTIMNMVRS 543
             +   +K LRTD GGE+ S  F  +   +G++RQLT  Y+PQQN VAER+NRTIMN+VRS
Sbjct: 526  ATNMSLKGLRTDLGGEFTSREFNNFFHAHGVQRQLTAAYSPQQNGVAERKNRTIMNLVRS 585

Query: 544  LLSTKKMPKFLWTEAVVWSVNVLNRCPTLSVKEKTPQEAWNGKKPVVDHMKVWGCIAHAH 723
            +LS KK+PK  W EAV W+V+VLN CPTL+VKEKTP+EAW+G KP V H +V+GC+++AH
Sbjct: 586  MLSEKKVPKTFWPEAVNWAVHVLNHCPTLAVKEKTPEEAWSGIKPSVQHFRVFGCVSYAH 645

Query: 724  VPKVNRGKLDNRSVKCVLLGMSEGTKGYRLYNTETKKIIITKDVVFEE 867
            VP   R KLD +S+KCVLLG+S+ +K YRLY+  +++III++DVVF E
Sbjct: 646  VPDNLRSKLDAKSLKCVLLGISDESKAYRLYDPISQRIIISRDVVFAE 693



 Score =  116 bits (291), Expect(3) = e-141
 Identities = 74/210 (35%), Positives = 102/210 (48%), Gaps = 7/210 (3%)
 Frame = +3

Query: 873  AFDWEKEHEKQIEAELEWEDD-MLAKEVTQLHQNGNIDHEDNQKGNQEXXXXXXXXXXXX 1049
            A++W   HE     ELEWEDD  +  E + +    +   E++   NQ+            
Sbjct: 696  AWEWNN-HESTTICELEWEDDDKVVSEESPVEDVADAQPEESLTINQD------------ 742

Query: 1050 XXXXXGNDQGRAINTKIQTSQDGQSSKRTHKRPAWMTDYESGNELSDDEVNL------VQ 1211
                               + +G    R+ ++  W+ DY SG  L D+E         + 
Sbjct: 743  -------------------TSEGLMEGRSRRQSTWLRDYVSGEGLFDEEAVFYSAFFALY 783

Query: 1212 VEEDDLVYFEATVKSVKLREAMDMEISSIVKNNTWSLTELPQKSKKIRVKWIYKIKKDEN 1391
                + + FE  VK  K R AMD+EI +I KN TW L + P+ +K + VKW+YK K +E 
Sbjct: 784  TAGAEPLNFEEAVKIEKWRNAMDIEIEAIEKNGTWELIDRPKGAKVVGVKWVYKTKLNEK 843

Query: 1392 GVVIKHKARLVAKGYAQKEGIDYNEVFAPV 1481
            G V K KARLV KGYAQ+ GIDY EVFAPV
Sbjct: 844  GKVDKFKARLVVKGYAQQYGIDYTEVFAPV 873



 Score = 88.2 bits (217), Expect(3) = e-141
 Identities = 39/55 (70%), Positives = 50/55 (90%)
 Frame = +1

Query: 1486 MDTVRLIISIAAQKGWKLYQLDVKSAFLYGELEEEVYIEQPRGYEKKGEEHKVYK 1650
            M+TVRL+I+ AAQKGW ++QLDVKSAFL+GEL E+V++EQPRGY +KG+E KVYK
Sbjct: 876  METVRLVIAYAAQKGWAIHQLDVKSAFLHGELAEDVFVEQPRGYVQKGKEEKVYK 930


>GAU44223.1 hypothetical protein TSUD_399870 [Trifolium subterraneum]
          Length = 1182

 Score =  322 bits (825), Expect(3) = e-140
 Identities = 151/275 (54%), Positives = 196/275 (71%)
 Frame = +1

Query: 43   KGLKTLKDKEMVSGLPKFKTQEITCADCLNGKQTRNSMPKHNNWRASKVLELIHSDICGP 222
            K L ++  +EMV GLP  K  +  C+DC+   Q  +S PK  +WRA+  LELIH DICGP
Sbjct: 361  KNLLSIAKREMVKGLPMVKDIQTVCSDCVVSTQHIDSFPKDTSWRAATKLELIHLDICGP 420

Query: 223  INPVSSTGKKYFLTFINDFSRKGWVFLLTNKSEAFNCFKEFKHSVEKESGEVIKSLRTDR 402
            INP S+ G +YF+ F +D ++K W + L +K  AF CFK FK  VEKES   +K LR DR
Sbjct: 421  INPTSNGGNRYFIAFTDDLTKKTWTYPLKDKESAFECFKMFKALVEKESNCAVKCLRIDR 480

Query: 403  GGEYLSDAFIEYCKNYGIKRQLTTTYTPQQNRVAERRNRTIMNMVRSLLSTKKMPKFLWT 582
            G E+ S  F E+C  +GIKRQLT TYTPQQN V+ER+NRT++NMVRS+L+ K +PK  W 
Sbjct: 481  GEEFTSSNFDEFCSEHGIKRQLTATYTPQQNGVSERKNRTLLNMVRSMLAGKNVPKRFWP 540

Query: 583  EAVVWSVNVLNRCPTLSVKEKTPQEAWNGKKPVVDHMKVWGCIAHAHVPKVNRGKLDNRS 762
            EAVVW+  V+NR PTLSV + TP+EAW+  KP+V H KV+GCI + H+P   R KLD + 
Sbjct: 541  EAVVWATYVINRSPTLSVNDMTPEEAWSSTKPLVSHFKVFGCIGYVHIPDTQRKKLDPKG 600

Query: 763  VKCVLLGMSEGTKGYRLYNTETKKIIITKDVVFEE 867
            +KCVLLG+SE +K Y+LY+   KKIII+KDVVF+E
Sbjct: 601  IKCVLLGVSEESKAYKLYDPLQKKIIISKDVVFDE 635



 Score =  117 bits (294), Expect(3) = e-140
 Identities = 76/188 (40%), Positives = 103/188 (54%), Gaps = 3/188 (1%)
 Frame = +3

Query: 927  EDDMLAKEVTQLHQNGNIDHEDNQKGNQEXXXXXXXXXXXXXXXXXGNDQGRAINTKIQT 1106
            EDD   +E T + +N   ++E+N + N +                        +NT I+ 
Sbjct: 668  EDDQQREEHTPIDEN---EYEENYEDNGD------------------------VNTTIR- 699

Query: 1107 SQDGQSSKRTHKRPAWMTDYESGNELSDDEV--NLVQVEED-DLVYFEATVKSVKLREAM 1277
                Q   R  K P W+ DY +  E +D E   NLV   +D D   +E   K    R+AM
Sbjct: 700  ----QLPPRARKPPGWVQDYVTNIEDNDIEAMQNLVVFRDDSDPHNYEEASKMTVWRKAM 755

Query: 1278 DMEISSIVKNNTWSLTELPQKSKKIRVKWIYKIKKDENGVVIKHKARLVAKGYAQKEGID 1457
            D EI SI +NN W L  LP+++K+I VKWI+K K +ENG V K+KARLVAKGY+Q+ GID
Sbjct: 756  DQEIESIERNNPWELVFLPKEAKRIGVKWIFKTKYNENGEVEKYKARLVAKGYSQQYGID 815

Query: 1458 YNEVFAPV 1481
            +NEVFAPV
Sbjct: 816  FNEVFAPV 823



 Score =  112 bits (280), Expect(3) = e-140
 Identities = 53/91 (58%), Positives = 70/91 (76%)
 Frame = +1

Query: 1483 RMDTVRLIISIAAQKGWKLYQLDVKSAFLYGELEEEVYIEQPRGYEKKGEEHKVYKLHEV 1662
            R D++R I+ +AA +GW +YQ DVKSAFL+GEL+E VY++QP GY KK  +  VYKL + 
Sbjct: 825  RWDSIRAILVVAASQGWYVYQFDVKSAFLHGELQENVYVDQPPGYFKK--DGMVYKLRKA 882

Query: 1663 LYGLKQAPRAWFSKIERHFLNEGFQECTSEN 1755
            LYGLKQAPRAW+SKIE +FL E F + + E+
Sbjct: 883  LYGLKQAPRAWYSKIESYFLQENFVKYSHEH 913


>GAU27637.1 hypothetical protein TSUD_125830 [Trifolium subterraneum]
          Length = 1199

 Score =  308 bits (790), Expect(3) = e-138
 Identities = 147/257 (57%), Positives = 182/257 (70%)
 Frame = +1

Query: 25   YVHLNFKGLKTLKDKEMVSGLPKFKTQEITCADCLNGKQTRNSMPKHNNWRASKVLELIH 204
            Y HL+FKGL  L  +EMV GLP  K  +  C DC+  KQ R+S PK  +WRA+  LELIH
Sbjct: 334  YGHLSFKGLNALAKREMVKGLPVIKDNQSVCLDCVVSKQHRDSFPKGTSWRAATKLELIH 393

Query: 205  SDICGPINPVSSTGKKYFLTFINDFSRKGWVFLLTNKSEAFNCFKEFKHSVEKESGEVIK 384
            SDICGPINP S+ G +YF+TF +D +RK W++ L  K+ AF CFK+FK  VEKES  VIK
Sbjct: 394  SDICGPINPTSNGGNRYFITFTDDLTRKTWIYPLKYKASAFECFKKFKALVEKESNCVIK 453

Query: 385  SLRTDRGGEYLSDAFIEYCKNYGIKRQLTTTYTPQQNRVAERRNRTIMNMVRSLLSTKKM 564
             LRTDRGGE+ S  F E+C  +GIKRQL   YTPQQN V+ER+NRTI+NMVRS+LS K +
Sbjct: 454  CLRTDRGGEFTSSNFDEFCSEHGIKRQLPAAYTPQQNGVSERKNRTILNMVRSMLSGKNV 513

Query: 565  PKFLWTEAVVWSVNVLNRCPTLSVKEKTPQEAWNGKKPVVDHMKVWGCIAHAHVPKVNRG 744
            PK  W EAVVW+  V+NR PTL VK+ TP+EAW+  KP V H KV+GCI +AH+    R 
Sbjct: 514  PKRFWPEAVVWATYVINRSPTLFVKDMTPEEAWSSTKPSVSHFKVFGCIGYAHISDTQRK 573

Query: 745  KLDNRSVKCVLLGMSEG 795
            KLD + +K V+   S G
Sbjct: 574  KLDPKGIKDVVFDESNG 590



 Score =  118 bits (296), Expect(3) = e-138
 Identities = 54/96 (56%), Positives = 74/96 (77%)
 Frame = +1

Query: 1483 RMDTVRLIISIAAQKGWKLYQLDVKSAFLYGELEEEVYIEQPRGYEKKGEEHKVYKLHEV 1662
            R DT+R+I++I A +GW +YQ DVKS FL+GEL+E VY++QP GY KK  +  VYKL + 
Sbjct: 777  RWDTIRVILAITASQGWYVYQFDVKSVFLHGELQENVYVDQPPGYCKK--DGMVYKLRKA 834

Query: 1663 LYGLKQAPRAWFSKIERHFLNEGFQECTSENTLFTK 1770
            LYGLKQA +AW++KIE +F+ E F +C+ E+TLF K
Sbjct: 835  LYGLKQAQKAWYNKIESYFMQENFVKCSHEHTLFVK 870



 Score =  118 bits (295), Expect(3) = e-138
 Identities = 78/208 (37%), Positives = 112/208 (53%), Gaps = 3/208 (1%)
 Frame = +3

Query: 867  TTAFDWEKEHEKQIEAELEWEDDMLAKEVTQLHQNGNIDHEDNQKGNQEXXXXXXXXXXX 1046
            +  ++W+++ + Q    +E        E    H +  I  E++Q+G++            
Sbjct: 588  SNGWNWDEKTKNQSPQVIE--------ETISEHSDQGITVEEDQQGDEHTPIDENEYEED 639

Query: 1047 XXXXXXGNDQGRAINTKIQTSQDGQSSKRTHKRPAWMTDYESGNELSDDEV--NL-VQVE 1217
                    D G  +NT I+     Q   R  K P W+ DY +  E SD E   NL V  +
Sbjct: 640  Y------EDNGD-VNTTIR-----QLPPRARKPPGWVQDYVTNIEDSDIEAMHNLAVFCD 687

Query: 1218 EDDLVYFEATVKSVKLREAMDMEISSIVKNNTWSLTELPQKSKKIRVKWIYKIKKDENGV 1397
            ++D   +E   K    R+AMD EI SI +NNTW L  LP+++K+I VKWI+K K +EN  
Sbjct: 688  DNDPHNYEEASKMTVWRKAMDQEIESIERNNTWKLVSLPKEAKRIGVKWIFKTKYNENEE 747

Query: 1398 VIKHKARLVAKGYAQKEGIDYNEVFAPV 1481
            V K+KARLVAKGY+Q+ GID+NEVFAPV
Sbjct: 748  VEKYKARLVAKGYSQQYGIDFNEVFAPV 775


>CAN72600.1 hypothetical protein VITISV_036712 [Vitis vinifera]
          Length = 1246

 Score =  242 bits (618), Expect(3) = e-137
 Identities = 122/272 (44%), Positives = 162/272 (59%)
 Frame = +1

Query: 52   KTLKDKEMVSGLPKFKTQEITCADCLNGKQTRNSMPKHNNWRASKVLELIHSDICGPINP 231
            K  K++ MV GLP      + C DCLNGKQ R+ +PK + WRA+K L+LIH++ICGP+ P
Sbjct: 414  KQEKNENMVHGLPHLLPTTLVCTDCLNGKQHRDPIPKKSAWRATKKLQLIHANICGPVTP 473

Query: 232  VSSTGKKYFLTFINDFSRKGWVFLLTNKSEAFNCFKEFKHSVEKESGEVIKSLRTDRGGE 411
             S+  K+Y L FI+DFSRK WV+ L  KS+A N FK FK  VEKE+G  IK LRTDRG  
Sbjct: 474  TSNGKKRYALCFIDDFSRKTWVYFLVEKSKALNSFKCFKRLVEKETGMYIKCLRTDRG-- 531

Query: 412  YLSDAFIEYCKNYGIKRQLTTTYTPQQNRVAERRNRTIMNMVRSLLSTKKMPKFLWTEAV 591
                                                            KK+PK  W EAV
Sbjct: 532  -----------------------------------------------EKKIPKTFWPEAV 544

Query: 592  VWSVNVLNRCPTLSVKEKTPQEAWNGKKPVVDHMKVWGCIAHAHVPKVNRGKLDNRSVKC 771
             W++ VLNR P ++VK  TP+EAW+G KP V+H +V+ C+AH HVP   R KLDN+S++C
Sbjct: 545  NWTMYVLNRSPIVAVKNVTPEEAWSGVKPTVEHFRVFECVAHVHVPDAKRTKLDNKSLEC 604

Query: 772  VLLGMSEGTKGYRLYNTETKKIIITKDVVFEE 867
            VLLG S+ +KGY+LY+   K ++ ++D+VFEE
Sbjct: 605  VLLGFSDESKGYKLYDPVAKNVVTSRDIVFEE 636



 Score =  160 bits (406), Expect(3) = e-137
 Identities = 70/96 (72%), Positives = 87/96 (90%)
 Frame = +1

Query: 1483 RMDTVRLIISIAAQKGWKLYQLDVKSAFLYGELEEEVYIEQPRGYEKKGEEHKVYKLHEV 1662
            RMDTVR+I+++ AQ+GW +YQLDVKSAFL GEL E+VY++QP+GYEKKG EHKVYKLH+ 
Sbjct: 837  RMDTVRMIVALTAQRGWTIYQLDVKSAFLNGELNEDVYVDQPKGYEKKGSEHKVYKLHKA 896

Query: 1663 LYGLKQAPRAWFSKIERHFLNEGFQECTSENTLFTK 1770
            LYGLKQAPRAWFS+IE +F++EGFQ+C +E TLFTK
Sbjct: 897  LYGLKQAPRAWFSRIEAYFISEGFQKCPNEQTLFTK 932



 Score =  137 bits (344), Expect(3) = e-137
 Identities = 82/207 (39%), Positives = 118/207 (57%), Gaps = 5/207 (2%)
 Frame = +3

Query: 876  FDWEKEHEKQIEAELEWEDDMLAKEVTQLHQNGNIDHEDNQKGNQEXXXXXXXXXXXXXX 1055
            ++W+  +E+Q+  +LEW DD   K  T+ ++ G+ + E   +GN+E              
Sbjct: 640  WEWDTSYEEQVLVDLEWGDD--DKNDTEDNE-GDENLEAASEGNEEAEGNENQAA----- 691

Query: 1056 XXXGNDQGRAINTKIQTSQDGQSS---KRTHKRPAWMTDYESGNELSDDEV--NLVQVEE 1220
                ND G A  T    +    S    ++  + P WM DY SG  LS+ E+  N+  V  
Sbjct: 692  ---ANDAGDATATDASDAPAEGSDAMERKVRRAPIWMEDYISGKGLSEGEIELNMALVAS 748

Query: 1221 DDLVYFEATVKSVKLREAMDMEISSIVKNNTWSLTELPQKSKKIRVKWIYKIKKDENGVV 1400
             D + +E  V S K R AMD EI+SI KN TW LT+LP  +K I VKWIYK K +E G V
Sbjct: 749  TDPINYEEVVMSSKWRLAMDSEINSIEKNQTWKLTDLPTGAKTIGVKWIYKTKLNELGEV 808

Query: 1401 IKHKARLVAKGYAQKEGIDYNEVFAPV 1481
             K+KARLVAKGY+Q++G+D+ +++APV
Sbjct: 809  DKYKARLVAKGYSQQQGVDFTKIYAPV 835


>CAN79845.1 hypothetical protein VITISV_027568 [Vitis vinifera]
          Length = 1226

 Score =  281 bits (718), Expect(3) = e-134
 Identities = 144/286 (50%), Positives = 190/286 (66%)
 Frame = +1

Query: 10   LWHQRYVHLNFKGLKTLKDKEMVSGLPKFKTQEITCADCLNGKQTRNSMPKHNNWRASKV 189
            LWH RY HL+F+GL+TL+ ++MV+GLP+F+     C DCL GKQ R+S+PK +NWRA+++
Sbjct: 371  LWHCRYGHLSFQGLQTLQQRKMVNGLPQFQPPSKLCKDCLVGKQHRSSIPKKSNWRAAEI 430

Query: 190  LELIHSDICGPINPVSSTGKKYFLTFINDFSRKGWVFLLTNKSEAFNCFKEFKHSVEKES 369
            L L+H+DICGPINP+S++ K           RK  V+ L  KSEAF  FK FK  VEKE+
Sbjct: 431  LLLVHADICGPINPISNSKK-----------RKIGVYFLVEKSEAFAVFKSFKTYVEKET 479

Query: 370  GEVIKSLRTDRGGEYLSDAFIEYCKNYGIKRQLTTTYTPQQNRVAERRNRTIMNMVRSLL 549
                                           +LT  YTPQ N VAER+NRTIMNMVRS+L
Sbjct: 480  -------------------------------KLTAAYTPQXNGVAERKNRTIMNMVRSML 508

Query: 550  STKKMPKFLWTEAVVWSVNVLNRCPTLSVKEKTPQEAWNGKKPVVDHMKVWGCIAHAHVP 729
            S KK+PK  W EAV W+V+ LNR PT +V+ KTP+EAW   KP VD+ +V+GC++H HVP
Sbjct: 509  SAKKLPKTFWPEAVNWTVHGLNRSPTFAVQNKTPEEAWGKLKPSVDYFRVFGCLSHVHVP 568

Query: 730  KVNRGKLDNRSVKCVLLGMSEGTKGYRLYNTETKKIIITKDVVFEE 867
               R KLD++S  CVLLG+SE +K Y LY+  ++KIII+++VVFEE
Sbjct: 569  DSKRTKLDDKSFSCVLLGVSEESKAYXLYDPISQKIIISRNVVFEE 614



 Score =  134 bits (336), Expect(3) = e-134
 Identities = 58/96 (60%), Positives = 80/96 (83%)
 Frame = +1

Query: 1483 RMDTVRLIISIAAQKGWKLYQLDVKSAFLYGELEEEVYIEQPRGYEKKGEEHKVYKLHEV 1662
            RM+T+RL++++AAQ+GW +YQLDVKSAFL+GEL + V++EQP GY +K  E KVYKL + 
Sbjct: 801  RMETIRLVVALAAQRGWSIYQLDVKSAFLHGELNKXVFVEQPCGYVQKXNEQKVYKLKKA 860

Query: 1663 LYGLKQAPRAWFSKIERHFLNEGFQECTSENTLFTK 1770
            LYGLKQAPRAW+++IE +F+ E F++C  E+TLF K
Sbjct: 861  LYGLKQAPRAWYNRIEAYFMKEVFEKCDYEHTLFIK 896



 Score =  117 bits (292), Expect(3) = e-134
 Identities = 69/207 (33%), Positives = 101/207 (48%), Gaps = 5/207 (2%)
 Frame = +3

Query: 876  FDWEKEHEKQIEAELEWEDDMLAKEVTQLHQNGNID---HEDNQKGNQEXXXXXXXXXXX 1046
            +DW+K++E+ I  +LEW DD     V +   + N+D    ED  + N             
Sbjct: 618  WDWDKKYEEAIVCDLEWGDDGEEATVNEEKSDSNLDADIEEDTXENNATATATESDAAVT 677

Query: 1047 XXXXXXGNDQGRAINTKIQTSQDGQSSKRTHKRPAWMTDYESGNELSDDE--VNLVQVEE 1220
                   N          + +    ++ R  + P W +DYE+G  +S++E  V L     
Sbjct: 678  ASHLLIQN----------RDNPSNSNAARNRRPPVWTSDYETGEGISEEEHEVQLAMFAA 727

Query: 1221 DDLVYFEATVKSVKLREAMDMEISSIVKNNTWSLTELPQKSKKIRVKWIYKIKKDENGVV 1400
             D +YFE  VKS K R  MD+E+ +I KN+TW LT+LP+  K I VKW+YK K +ENG  
Sbjct: 728  ADPIYFEEAVKSEKWRTTMDVEMEAIKKNDTWELTDLPKGGKTIGVKWVYKTKFNENG-- 785

Query: 1401 IKHKARLVAKGYAQKEGIDYNEVFAPV 1481
                         ++ G+DY EVFAPV
Sbjct: 786  -------------ERFGVDYTEVFAPV 799


>CAN81839.1 hypothetical protein VITISV_033739 [Vitis vinifera]
          Length = 1088

 Score =  241 bits (615), Expect(3) = e-133
 Identities = 113/183 (61%), Positives = 146/183 (79%)
 Frame = +1

Query: 319 EAFNCFKEFKHSVEKESGEVIKSLRTDRGGEYLSDAFIEYCKNYGIKRQLTTTYTPQQNR 498
           EA+  FK +K  VEKE+G  I+SLRTDRGGE+ S+ F  +C   GI RQLT  YTPQQN 
Sbjct: 290 EAYATFKTYKAKVEKETGAFIRSLRTDRGGEFTSNEFTSFCNENGILRQLTAAYTPQQNG 349

Query: 499 VAERRNRTIMNMVRSLLSTKKMPKFLWTEAVVWSVNVLNRCPTLSVKEKTPQEAWNGKKP 678
           VAER+NRTIMNMVRS+LS K++PK  W EAV W+V+VLNR PTL+VK KTP+EAW+G+KP
Sbjct: 350 VAERKNRTIMNMVRSMLSEKQIPKTFWPEAVNWTVHVLNRSPTLAVKNKTPEEAWSGRKP 409

Query: 679 VVDHMKVWGCIAHAHVPKVNRGKLDNRSVKCVLLGMSEGTKGYRLYNTETKKIIITKDVV 858
            VDH +++GCI+H HVP   R KLD +S++C+LLG+SE +K YRL++  ++KIII++DVV
Sbjct: 410 SVDHFRIFGCISHVHVPDHKRVKLDAKSLRCILLGVSEESKAYRLFDPISQKIIISRDVV 469

Query: 859 FEE 867
           FEE
Sbjct: 470 FEE 472



 Score =  143 bits (361), Expect(3) = e-133
 Identities = 62/96 (64%), Positives = 83/96 (86%)
 Frame = +1

Query: 1483 RMDTVRLIISIAAQKGWKLYQLDVKSAFLYGELEEEVYIEQPRGYEKKGEEHKVYKLHEV 1662
            R++T+R++IS+AAQK W +YQLDVKSAFL+GE+ EE ++EQP GYE+KG+E KVY+L + 
Sbjct: 664  RLETIRIVISLAAQKDWMIYQLDVKSAFLHGEIHEEXFVEQPPGYEQKGKESKVYRLKKA 723

Query: 1663 LYGLKQAPRAWFSKIERHFLNEGFQECTSENTLFTK 1770
            LYGLKQAPRAW+S+IE +F+ EGF +C  E+TLFTK
Sbjct: 724  LYGLKQAPRAWYSRIESYFIKEGFNKCPYEHTLFTK 759



 Score =  142 bits (358), Expect(3) = e-133
 Identities = 87/206 (42%), Positives = 110/206 (53%), Gaps = 6/206 (2%)
 Frame = +3

Query: 882  WEKEHEKQIEAELEWEDDMLAKEVTQLHQNGNIDHED--NQKGNQEXXXXXXXXXXXXXX 1055
            W+  HE  I A+LEWE D    E T    +GN +  +     GN E              
Sbjct: 478  WDNSHEPAILADLEWESD----EETDTEDDGNEEEPEAGEDMGNSE-------------- 519

Query: 1056 XXXGNDQGRAINTKIQTSQDGQSSKRTHKRPAWMTDYESGNELSDDE-VNLVQVE---ED 1223
                ND     N +           RT + P WM DYE+G  LSD+E VNL Q+    + 
Sbjct: 520  ---SNDSDSFENGETTYEDSTPHEGRTRRPPTWMQDYETGAGLSDEESVNLAQLALFTDS 576

Query: 1224 DLVYFEATVKSVKLREAMDMEISSIVKNNTWSLTELPQKSKKIRVKWIYKIKKDENGVVI 1403
            D   ++  V+S K R AM+ EI +I +NNTW LT+LP   K I VKWI+K K +ENG V 
Sbjct: 577  DPTTYDDAVRSEKWRLAMNQEIEAIERNNTWELTDLPSGGKTIGVKWIFKTKLNENGEVD 636

Query: 1404 KHKARLVAKGYAQKEGIDYNEVFAPV 1481
            K+KARLVAKGY+Q+ G DY EVFAPV
Sbjct: 637  KYKARLVAKGYSQQYGXDYVEVFAPV 662


>GAU15733.1 hypothetical protein TSUD_235460 [Trifolium subterraneum]
          Length = 1067

 Score =  360 bits (924), Expect(2) = e-122
 Identities = 169/289 (58%), Positives = 215/289 (74%)
 Frame = +1

Query: 1    QAMLWHQRYVHLNFKGLKTLKDKEMVSGLPKFKTQEITCADCLNGKQTRNSMPKHNNWRA 180
            Q  LWH RY HL+  GLK L  K+MV GLP  +     C DCL GKQ R  +PK   WRA
Sbjct: 419  QTQLWHNRYGHLSVNGLKLLSSKDMVKGLPAIREMSERCIDCLIGKQQREVIPKQAKWRA 478

Query: 181  SKVLELIHSDICGPINPVSSTGKKYFLTFINDFSRKGWVFLLTNKSEAFNCFKEFKHSVE 360
            +  L+LIHSDICGPINP S+ GK+YFLT  +DFSRK WV++L  KSEAF  FK FK  VE
Sbjct: 479  NTKLQLIHSDICGPINPCSNGGKRYFLTLTDDFSRKTWVYVLKEKSEAFETFKNFKALVE 538

Query: 361  KESGEVIKSLRTDRGGEYLSDAFIEYCKNYGIKRQLTTTYTPQQNRVAERRNRTIMNMVR 540
             ESG VI+ LRTDRGGE+ S+ F E+CK  GIKRQLTT YTPQQN V+ER+NRT++N+VR
Sbjct: 539  IESGCVIQMLRTDRGGEFTSNVFNEFCKTKGIKRQLTTAYTPQQNGVSERKNRTLLNIVR 598

Query: 541  SLLSTKKMPKFLWTEAVVWSVNVLNRCPTLSVKEKTPQEAWNGKKPVVDHMKVWGCIAHA 720
            S+L+ + +PK  W EA+ W+  V+NR PT SV++ TP+EAW+G KP V H + + C+A+A
Sbjct: 599  SVLACRNVPKSFWPEALKWAAYVMNRSPTSSVRDMTPEEAWSGVKPSVKHFRTFDCLAYA 658

Query: 721  HVPKVNRGKLDNRSVKCVLLGMSEGTKGYRLYNTETKKIIITKDVVFEE 867
            HVP  +R KLDN+S+KCVLLG+S+ +K Y+LYN   KKI+I++DVVF+E
Sbjct: 659  HVPDSHRKKLDNKSIKCVLLGISDESKAYKLYNPVDKKIVISRDVVFDE 707



 Score =  110 bits (274), Expect(2) = e-122
 Identities = 71/207 (34%), Positives = 100/207 (48%), Gaps = 6/207 (2%)
 Frame = +3

Query: 867  TTAFDWE-KEHEKQIEAELEWEDDML---AKEVTQLHQNGNIDHEDNQKGNQEXXXXXXX 1034
            T  +DWE KE  K I  +    DD +   A  VT   + G I  + +     +       
Sbjct: 708  TKGWDWENKEKIKVINTDYNLLDDSITEAATPVTPTIEEGAISDDSSTDAEAQG------ 761

Query: 1035 XXXXXXXXXXGNDQGRAINTKIQTSQDGQSSKRTHKRPAWMTDYESGNELSDDEV--NLV 1208
                             I +   +  D     R  K P+ + D+  G E  +++   NL 
Sbjct: 762  ----------ATSSEEIIVSDTSSDDDAVLGPRIRKTPSHLRDFVIGKEAEEEQQLHNLA 811

Query: 1209 QVEEDDLVYFEATVKSVKLREAMDMEISSIVKNNTWSLTELPQKSKKIRVKWIYKIKKDE 1388
                 D   +E   KS K ++AMD+EI +I  NNTW L++LP+ +K I VKW+YK K +E
Sbjct: 812  VYSSSDPETYEEASKSQKWKQAMDVEIEAIEANNTWELSDLPKGAKAIGVKWVYKTKYNE 871

Query: 1389 NGVVIKHKARLVAKGYAQKEGIDYNEV 1469
             G V K+KARLV KGY+QK GIDYNE+
Sbjct: 872  IGQVDKYKARLVVKGYSQKYGIDYNEI 898


>GAU43961.1 hypothetical protein TSUD_283880 [Trifolium subterraneum]
          Length = 1273

 Score =  361 bits (926), Expect(2) = e-122
 Identities = 169/289 (58%), Positives = 216/289 (74%)
 Frame = +1

Query: 1    QAMLWHQRYVHLNFKGLKTLKDKEMVSGLPKFKTQEITCADCLNGKQTRNSMPKHNNWRA 180
            +  LWH RY HL+ KGLK L  K+MV GLP        C DCL GKQ R  +PK   WRA
Sbjct: 419  KTQLWHNRYGHLSVKGLKILNSKDMVKGLPALGEMNERCTDCLIGKQQREVIPKQAKWRA 478

Query: 181  SKVLELIHSDICGPINPVSSTGKKYFLTFINDFSRKGWVFLLTNKSEAFNCFKEFKHSVE 360
            +  L+LIHSDICGPINP S+ GK+YFLT  +DFSRK WV++L  KSEAF  F+ FK  VE
Sbjct: 479  TTKLQLIHSDICGPINPCSNGGKRYFLTLTDDFSRKTWVYILKEKSEAFETFRNFKAMVE 538

Query: 361  KESGEVIKSLRTDRGGEYLSDAFIEYCKNYGIKRQLTTTYTPQQNRVAERRNRTIMNMVR 540
             +SG VI+ LRTDRGGE+ S+AF E+CK+ GIKRQLTT YTPQQN V+ER+NRT++N+VR
Sbjct: 539  LKSGCVIQMLRTDRGGEFTSNAFNEFCKSKGIKRQLTTAYTPQQNGVSERKNRTLLNIVR 598

Query: 541  SLLSTKKMPKFLWTEAVVWSVNVLNRCPTLSVKEKTPQEAWNGKKPVVDHMKVWGCIAHA 720
            S+L+ + +PK  W EA+ W+  V+NR PT SV++ TP+EAW+G KP V H + +GC+A+A
Sbjct: 599  SMLACRNVPKSFWPEALKWAAYVMNRSPTSSVRDMTPEEAWSGVKPSVKHFRTFGCLAYA 658

Query: 721  HVPKVNRGKLDNRSVKCVLLGMSEGTKGYRLYNTETKKIIITKDVVFEE 867
            HVP   R KLDNRS+ CVLLG+S+ +K Y+LYN   KKI+I++DVVF+E
Sbjct: 659  HVPYSQRRKLDNRSITCVLLGISDESKAYKLYNPVDKKIVISRDVVFDE 707



 Score =  108 bits (271), Expect(2) = e-122
 Identities = 71/201 (35%), Positives = 103/201 (51%), Gaps = 4/201 (1%)
 Frame = +3

Query: 876  FDWE-KEHEKQIEAELEWEDDMLAKEVTQLHQNGNIDHEDNQKGNQEXXXXXXXXXXXXX 1052
            +DWE KE  K I  + ++ DD + +            +E     N+E             
Sbjct: 711  WDWENKEKLKDISTDYDFLDDSVIEPAA---------NETVTPTNEETSTRDDSSTYVEV 761

Query: 1053 XXXXGNDQGRAINTKIQTSQDG-QSSKRTHKRPAWMTDYESGNELSDDEV--NLVQVEED 1223
                 +++    +T+   S DG +   R  K P+ + D+  G E  +++   NL      
Sbjct: 762  QRDASSEEIIVSDTR---SDDGIELGPRIKKTPSHLRDFVIGKEAEEEQQLHNLDVYSNG 818

Query: 1224 DLVYFEATVKSVKLREAMDMEISSIVKNNTWSLTELPQKSKKIRVKWIYKIKKDENGVVI 1403
            D   +E   KS K ++AMD EI +I  NNTW L++LP+ +K I VKW+YK K +ENG + 
Sbjct: 819  DPETYEEASKSHKWKQAMDTEIEAIKANNTWELSDLPKGAKAIGVKWVYKTKYNENGKID 878

Query: 1404 KHKARLVAKGYAQKEGIDYNE 1466
            KHKARLV KGY+QK GIDYNE
Sbjct: 879  KHKARLVVKGYSQKYGIDYNE 899



 Score =  102 bits (254), Expect = 6e-19
 Identities = 51/92 (55%), Positives = 72/92 (78%), Gaps = 1/92 (1%)
 Frame = +1

Query: 1498 RLIISIAAQKGWKLYQLDV-KSAFLYGELEEEVYIEQPRGYEKKGEEHKVYKLHEVLYGL 1674
            RL++   +QK    Y +D  +SAFL+G+LEE++Y+EQP GY++ G+ +KVYKL + LYGL
Sbjct: 883  RLVVKGYSQK----YGIDYNESAFLHGDLEEDIYVEQPLGYQQ-GDTNKVYKLKKALYGL 937

Query: 1675 KQAPRAWFSKIERHFLNEGFQECTSENTLFTK 1770
            +QAPRAW+SKIE +FL EGF++C  E+TLF K
Sbjct: 938  RQAPRAWYSKIEAYFLCEGFKKCPVEHTLFVK 969


>KYP43087.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94
           [Cajanus cajan]
          Length = 551

 Score =  376 bits (965), Expect(2) = e-122
 Identities = 179/287 (62%), Positives = 222/287 (77%), Gaps = 1/287 (0%)
 Frame = +1

Query: 10  LWHQRYVHLNFKGLKTLKDKEMVSGLPK-FKTQEITCADCLNGKQTRNSMPKHNNWRASK 186
           LWH+RY HL+ KGL+ L+ K MV GLP    T E  C DC+ GKQ R+ +PK + WRA +
Sbjct: 124 LWHRRYAHLSHKGLRILQSKGMVRGLPSSLSTTEKVCEDCMKGKQHRDPIPKKSQWRAKQ 183

Query: 187 VLELIHSDICGPINPVSSTGKKYFLTFINDFSRKGWVFLLTNKSEAFNCFKEFKHSVEKE 366
            LELIH+DICGPI P S++ K+YFL FI+D++RK W++ LT KSEAF+ F+ FK+ VEKE
Sbjct: 184 KLELIHADICGPIIPSSNSQKRYFLCFIDDYTRKAWIYFLTEKSEAFHYFQCFKNLVEKE 243

Query: 367 SGEVIKSLRTDRGGEYLSDAFIEYCKNYGIKRQLTTTYTPQQNRVAERRNRTIMNMVRSL 546
           SG +IK LRTDRGGE+ S  F E+C+  GIKRQLTT YTPQQN VAER+NRTIMN+VR+L
Sbjct: 244 SGLMIKCLRTDRGGEFTSSEFNEFCQKTGIKRQLTTAYTPQQNGVAERKNRTIMNLVRTL 303

Query: 547 LSTKKMPKFLWTEAVVWSVNVLNRCPTLSVKEKTPQEAWNGKKPVVDHMKVWGCIAHAHV 726
           LS KK+PK  W EAV W   VLNR PTL VK +TP+EAW+G KP V+H +V+GC+ H HV
Sbjct: 304 LSEKKLPKSFWPEAVNWVAYVLNRSPTLVVKNQTPEEAWSGVKPSVEHFRVFGCVTHVHV 363

Query: 727 PKVNRGKLDNRSVKCVLLGMSEGTKGYRLYNTETKKIIITKDVVFEE 867
           P   R KL+N+S KCVLLGMSE +KGYRLYN  T+KI+I++DVVFEE
Sbjct: 364 PDAGRTKLENKSCKCVLLGMSEESKGYRLYNPITRKIVISRDVVFEE 410



 Score = 93.6 bits (231), Expect(2) = e-122
 Identities = 59/169 (34%), Positives = 83/169 (49%), Gaps = 3/169 (1%)
 Frame = +3

Query: 870  TAFDWEKEHEKQIEAELEWEDDMLAKEVTQLHQNGNIDHEDN-QKGNQEXXXXXXXXXXX 1046
            T ++W   H ++  A+LE+ D    K   ++ +    D E N ++GNQ            
Sbjct: 412  TQWNWNVSHREEQFADLEYGD---TKNTAEVEEENTADGESNDEEGNQSQ---------- 458

Query: 1047 XXXXXXGNDQGRAINTKIQTSQDGQSSKRTHKRPAWMTDYESGNELSDDE--VNLVQVEE 1220
                   N++ + IN +           R    P WM DY  G E S+ E  +N+  ++ 
Sbjct: 459  -------NEENKVINDE---------RGRNRHPPGWMRDYVDGEEFSESEDAINMALIDC 502

Query: 1221 DDLVYFEATVKSVKLREAMDMEISSIVKNNTWSLTELPQKSKKIRVKWI 1367
             D   FE  VKS K R+AMD EI+SIVKN TW LT+LP  +KKI VKWI
Sbjct: 503  TDPESFEVVVKSSKWRQAMDAEINSIVKNGTWELTDLPVGAKKIGVKWI 551


>GAU47763.1 hypothetical protein TSUD_193000 [Trifolium subterraneum]
          Length = 622

 Score =  370 bits (951), Expect = e-117
 Identities = 167/289 (57%), Positives = 222/289 (76%)
 Frame = +1

Query: 1    QAMLWHQRYVHLNFKGLKTLKDKEMVSGLPKFKTQEITCADCLNGKQTRNSMPKHNNWRA 180
            ++ LWHQRY HL+ KGLK L +K +V GLP+ K  E  C DCL+GKQ + ++PK  NWRA
Sbjct: 305  ESSLWHQRYAHLSMKGLKILSNKHLVKGLPELKNIEDKCIDCLSGKQHKKNIPKQANWRA 364

Query: 181  SKVLELIHSDICGPINPVSSTGKKYFLTFINDFSRKGWVFLLTNKSEAFNCFKEFKHSVE 360
            S+ LEL+HSDICGPINP S+ G +YF+TF +D+SRK W + L  KS A + FK FK  VE
Sbjct: 365  SQKLELVHSDICGPINPKSNGGNRYFITFTDDYSRKTWTYFLHEKSSAIDVFKRFKALVE 424

Query: 361  KESGEVIKSLRTDRGGEYLSDAFIEYCKNYGIKRQLTTTYTPQQNRVAERRNRTIMNMVR 540
            KESG +++ LRTDRGGE+ S+ F E+C + GIKRQLTT YTP+QN V+ER+N+T++NMVR
Sbjct: 425  KESGCLVQCLRTDRGGEFTSNTFNEFCSSQGIKRQLTTAYTPEQNGVSERKNKTLLNMVR 484

Query: 541  SLLSTKKMPKFLWTEAVVWSVNVLNRCPTLSVKEKTPQEAWNGKKPVVDHMKVWGCIAHA 720
            S++S + +PK  W EAV W+  V+NR PT  VK+ TP+EAW+G KP V H +V+GC+AH 
Sbjct: 485  SMISARGVPKKFWPEAVNWATYVMNRYPTFVVKDMTPEEAWSGSKPYVHHFRVFGCLAHT 544

Query: 721  HVPKVNRGKLDNRSVKCVLLGMSEGTKGYRLYNTETKKIIITKDVVFEE 867
            HVP+ +R KLD RS+KCVLLG+SE +K Y+LY+   KKII+++DV+FEE
Sbjct: 545  HVPEAHRKKLDGRSIKCVLLGVSEESKAYKLYDPAEKKIIVSRDVIFEE 593


>KYP57183.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus
            cajan]
          Length = 884

 Score =  370 bits (950), Expect = e-114
 Identities = 176/287 (61%), Positives = 218/287 (75%)
 Frame = +1

Query: 10   LWHQRYVHLNFKGLKTLKDKEMVSGLPKFKTQEITCADCLNGKQTRNSMPKHNNWRASKV 189
            LWH RY HL+FKGLKTL +K MV GLPK       C DC+ GKQ R+S P    WRA ++
Sbjct: 407  LWHLRYGHLSFKGLKTLHEKNMVEGLPKINCPTEICEDCIVGKQHRDSFPHGKAWRAQQI 466

Query: 190  LELIHSDICGPINPVSSTGKKYFLTFINDFSRKGWVFLLTNKSEAFNCFKEFKHSVEKES 369
            L+L+HSDICGPINP S+  K+YF+ FI+D SRK WV+ L  KSEAF  FK FK  VEKES
Sbjct: 467  LQLVHSDICGPINPTSNGNKRYFIIFIDDHSRKTWVYFLQEKSEAFLIFKSFKSRVEKES 526

Query: 370  GEVIKSLRTDRGGEYLSDAFIEYCKNYGIKRQLTTTYTPQQNRVAERRNRTIMNMVRSLL 549
            G+ I+ LRTDRGGE+ S  F  +C+ +GI+RQLT  YTPQQN VAER+N+TIMNMVRS+L
Sbjct: 527  GKYIQILRTDRGGEFNSHNFASFCELHGIQRQLTAAYTPQQNGVAERKNQTIMNMVRSML 586

Query: 550  STKKMPKFLWTEAVVWSVNVLNRCPTLSVKEKTPQEAWNGKKPVVDHMKVWGCIAHAHVP 729
              K +PK  W EAV WSV++LNR PTL+VK  TPQ+AW+  KP VDH K++GCIA+AHVP
Sbjct: 587  VKKNIPKTFWPEAVNWSVHILNRSPTLAVKNITPQQAWSEVKPSVDHFKIFGCIAYAHVP 646

Query: 730  KVNRGKLDNRSVKCVLLGMSEGTKGYRLYNTETKKIIITKDVVFEEQ 870
               R KLD++SVKCV +G+SE +K YRLYN  TKKIII++DV+F+E+
Sbjct: 647  DEKRTKLDDKSVKCVFVGVSEESKAYRLYNPTTKKIIISRDVLFDEE 693



 Score =  126 bits (317), Expect = 9e-27
 Identities = 65/130 (50%), Positives = 85/130 (65%), Gaps = 5/130 (3%)
 Frame = +3

Query: 1107 SQDGQS---SKRTHKRPAWMTDYESGNELSDDEV--NLVQVEEDDLVYFEATVKSVKLRE 1271
            ++D QS    +R  KRP+WM DY SG+ELSD++   +       D + F   VK  K ++
Sbjct: 753  NEDQQSVLEPQRQRKRPSWMIDYVSGDELSDEDTAAHFALFTGSDPILFAEAVKEEKWKK 812

Query: 1272 AMDMEISSIVKNNTWSLTELPQKSKKIRVKWIYKIKKDENGVVIKHKARLVAKGYAQKEG 1451
            AMD+EI +I KN TW LT+LP+  K I VKW+YK K +E G + K KARLV KGY Q+ G
Sbjct: 813  AMDVEIQAIEKNGTWELTDLPKGQKTIGVKWVYKTKLNEKGEIDKFKARLVVKGYNQEHG 872

Query: 1452 IDYNEVFAPV 1481
            +DY EVFAPV
Sbjct: 873  VDYQEVFAPV 882


>GAU16533.1 hypothetical protein TSUD_167640 [Trifolium subterraneum]
          Length = 1103

 Score =  374 bits (961), Expect = e-114
 Identities = 176/287 (61%), Positives = 219/287 (76%)
 Frame = +1

Query: 10   LWHQRYVHLNFKGLKTLKDKEMVSGLPKFKTQEITCADCLNGKQTRNSMPKHNNWRASKV 189
            LWH RY HLN KGL+ L+ K MV GLPKF+     CADCL GKQ R S+PK +NW++SK 
Sbjct: 424  LWHCRYGHLNIKGLQNLQQKNMVIGLPKFEESNHVCADCLRGKQHRESIPKTSNWKSSKR 483

Query: 190  LELIHSDICGPINPVSSTGKKYFLTFINDFSRKGWVFLLTNKSEAFNCFKEFKHSVEKES 369
            LELIHSDICGPI PVS++ K+Y LTFI+D+SRK W + L+NKS+AF CFK+FK  VEKE+
Sbjct: 484  LELIHSDICGPITPVSNSNKRYVLTFIDDYSRKIWAYYLSNKSDAFECFKKFKCMVEKET 543

Query: 370  GEVIKSLRTDRGGEYLSDAFIEYCKNYGIKRQLTTTYTPQQNRVAERRNRTIMNMVRSLL 549
             E I  LRTDRGGE+ SD F E+C+  GIKRQLT  YTPQQN +AER+NRTIM M+R +L
Sbjct: 544  SETICCLRTDRGGEFNSDEFKEFCEVNGIKRQLTAAYTPQQNGIAERKNRTIMEMIRCML 603

Query: 550  STKKMPKFLWTEAVVWSVNVLNRCPTLSVKEKTPQEAWNGKKPVVDHMKVWGCIAHAHVP 729
            + K +PK  W EAV W++ VLNR PT ++K+ TP+E W+  KP V H K++GCIA+AHVP
Sbjct: 604  AGKSVPKAFWPEAVNWAIYVLNRSPTAAIKDMTPEEVWSSTKPSVKHFKIFGCIAYAHVP 663

Query: 730  KVNRGKLDNRSVKCVLLGMSEGTKGYRLYNTETKKIIITKDVVFEEQ 870
               R KLD++SVKCV  G+SE TK YRLYN  TK+III++DV F E+
Sbjct: 664  DAQRKKLDDKSVKCVFFGISEETKAYRLYNPITKRIIISRDVKFVEK 710



 Score =  142 bits (358), Expect(2) = 2e-58
 Identities = 63/96 (65%), Positives = 80/96 (83%)
 Frame = +1

Query: 1483 RMDTVRLIISIAAQKGWKLYQLDVKSAFLYGELEEEVYIEQPRGYEKKGEEHKVYKLHEV 1662
            R DT+R +++I+A +GW +YQLDVKSAFL+GEL+E VY+EQP GY K G+E KVYKLH+ 
Sbjct: 906  RWDTIRSLLAISASRGWNVYQLDVKSAFLHGELKETVYVEQPAGYVKSGKEDKVYKLHKA 965

Query: 1663 LYGLKQAPRAWFSKIERHFLNEGFQECTSENTLFTK 1770
            LYGLKQAPRAW+SKIE +F+ EGF +C  E+TLF K
Sbjct: 966  LYGLKQAPRAWYSKIEAYFIKEGFVKCPHEHTLFVK 1001



 Score =  114 bits (285), Expect(2) = 2e-58
 Identities = 65/124 (52%), Positives = 80/124 (64%), Gaps = 7/124 (5%)
 Frame = +3

Query: 1131 RTHKRPAWMTDYESG---NELSD-DEVNLVQV---EEDDLVYFEATVKSVKLREAMDMEI 1289
            RT K P W +DY++    +EL D D +N +       +D   FE  VKS   R AM+ EI
Sbjct: 781  RTRKPPFWHSDYDTTITEDELVDEDSMNFITFGPCTSEDPSSFEEAVKSSTWRLAMNKEI 840

Query: 1290 SSIVKNNTWSLTELPQKSKKIRVKWIYKIKKDENGVVIKHKARLVAKGYAQKEGIDYNEV 1469
             +I KN TW LT+LPQ +K I VKWIYK K +E G + K+KARLVAKGYAQ+ G DY EV
Sbjct: 841  EAIEKNKTWQLTDLPQGAKVIGVKWIYKTKLNEKGEIEKYKARLVAKGYAQRYGTDYKEV 900

Query: 1470 FAPV 1481
            FAPV
Sbjct: 901  FAPV 904


>GAU51653.1 hypothetical protein TSUD_414750 [Trifolium subterraneum]
          Length = 847

 Score =  367 bits (941), Expect = e-113
 Identities = 169/286 (59%), Positives = 221/286 (77%)
 Frame = +1

Query: 10   LWHQRYVHLNFKGLKTLKDKEMVSGLPKFKTQEITCADCLNGKQTRNSMPKHNNWRASKV 189
            LWH RY HL+FKGL TL  KEMV GLP  +  E T   CL  KQ R ++PK +NWRA+K+
Sbjct: 426  LWHCRYGHLSFKGLNTLVKKEMVKGLPHLQDMEDTFVSCLTSKQHREAIPKSSNWRATKL 485

Query: 190  LELIHSDICGPINPVSSTGKKYFLTFINDFSRKGWVFLLTNKSEAFNCFKEFKHSVEKES 369
            LEL+HSDICGPI P S+ G +YF+TF +DFSRK W +LL NK+ AF+ FK+FK  VEKES
Sbjct: 486  LELVHSDICGPITPQSNGGNRYFITFTDDFSRKTWTYLLANKACAFDEFKKFKALVEKES 545

Query: 370  GEVIKSLRTDRGGEYLSDAFIEYCKNYGIKRQLTTTYTPQQNRVAERRNRTIMNMVRSLL 549
               I  LRTDRGGE+ S+AF EYC  +GIKRQLTT YTPQQN V+ER+NRT++NMVRS+L
Sbjct: 546  NTQIMCLRTDRGGEFTSNAFNEYCSAHGIKRQLTTAYTPQQNGVSERKNRTLLNMVRSML 605

Query: 550  STKKMPKFLWTEAVVWSVNVLNRCPTLSVKEKTPQEAWNGKKPVVDHMKVWGCIAHAHVP 729
              K +PK  W EA+ W+  VLNR PTLSVK+ TP++AW+G KP V+H +V+GC+A  H+P
Sbjct: 606  DGKCVPKTFWPEALKWATYVLNRSPTLSVKDMTPEKAWSGSKPTVEHFRVFGCVAFVHIP 665

Query: 730  KVNRGKLDNRSVKCVLLGMSEGTKGYRLYNTETKKIIITKDVVFEE 867
               R KLD++S++C+LLG+SE +KGY+LY+  +K+II+++DV+F+E
Sbjct: 666  DSQRKKLDSKSIQCILLGLSEESKGYKLYDPVSKRIIVSRDVIFDE 711


>JAU09122.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94,
           partial [Noccaea caerulescens]
          Length = 357

 Score =  351 bits (900), Expect = e-113
 Identities = 162/289 (56%), Positives = 219/289 (75%)
 Frame = +1

Query: 1   QAMLWHQRYVHLNFKGLKTLKDKEMVSGLPKFKTQEITCADCLNGKQTRNSMPKHNNWRA 180
           +A LWH RY HL++KGL TL  KEMV GLP+ +  +  C  C+ GK  R   PK + WRA
Sbjct: 56  KAELWHHRYGHLSYKGLNTLCSKEMVVGLPEIEDVKTVCDACVRGKHHRVPFPKQSKWRA 115

Query: 181 SKVLELIHSDICGPINPVSSTGKKYFLTFINDFSRKGWVFLLTNKSEAFNCFKEFKHSVE 360
           ++ LELIHSD+CGPI+P S++  +Y ++FI+DFSRK W++ +  KSEAF+ FK FK  VE
Sbjct: 116 TERLELIHSDLCGPISPSSNSQIRYLISFIDDFSRKTWIYFVGEKSEAFDRFKTFKAFVE 175

Query: 361 KESGEVIKSLRTDRGGEYLSDAFIEYCKNYGIKRQLTTTYTPQQNRVAERRNRTIMNMVR 540
           K++G +IK LRTDRGGEY S+ F  +C+ +GIKRQLTT +TPQQN VAER+NRTIMNMVR
Sbjct: 176 KQTGLLIKGLRTDRGGEYNSNEFKGFCREHGIKRQLTTAFTPQQNGVAERKNRTIMNMVR 235

Query: 541 SLLSTKKMPKFLWTEAVVWSVNVLNRCPTLSVKEKTPQEAWNGKKPVVDHMKVWGCIAHA 720
           + L  K++PK  W +AV W  ++LNR PTL VK+KTP+EAW+GKKP V+H +V+GC+ + 
Sbjct: 236 AALLEKEVPKSFWPDAVQWVNHILNRSPTLVVKDKTPEEAWSGKKPSVEHFRVFGCVGYV 295

Query: 721 HVPKVNRGKLDNRSVKCVLLGMSEGTKGYRLYNTETKKIIITKDVVFEE 867
           H+P   R KLD++SVKCVLLG S  +K +++++  TKKI I++DV+FEE
Sbjct: 296 HIPDAKRSKLDDKSVKCVLLGFSSESKAFKMFDPATKKIHISRDVIFEE 344