BLASTX nr result
ID: Lithospermum22_contig00046853
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lithospermum22_contig00046853
(403 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containi... 184 8e-45
ref|XP_003624942.1| Pentatricopeptide repeat-containing protein ... 182 2e-44
gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula] 182 2e-44
ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containi... 170 1e-40
ref|XP_002518758.1| pentatricopeptide repeat-containing protein,... 169 3e-40
>ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Glycine max]
Length = 824
Score = 184 bits (466), Expect = 8e-45
Identities = 86/132 (65%), Positives = 107/132 (81%)
Frame = +1
Query: 4 EVAHRIFRDMPVRDTGCWNAVISGFCQNGKAFEALNILDEMTLGGFEMDAMTLSTILPIC 183
EVAH++F DMPVRD G WNA+ISGFCQNG EAL +LD M +MD +T+S++LPIC
Sbjct: 199 EVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMKTEEVKMDTVTVSSMLPIC 258
Query: 184 AQVDDILRGLSIHLYVIKQGLESDIFVSNALINMYAKFRELDKAKKIFNHMVVRDLVSWN 363
AQ +D++ G+ +HLYVIK GLESD+FVSNALINMY+KF L A+++F+ M VRDLVSWN
Sbjct: 259 AQSNDVVGGVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWN 318
Query: 364 SIIAAYEQNNQP 399
SIIAAYEQN+ P
Sbjct: 319 SIIAAYEQNDDP 330
Score = 99.0 bits (245), Expect = 4e-19
Identities = 50/132 (37%), Positives = 76/132 (57%), Gaps = 1/132 (0%)
Frame = +1
Query: 10 AHRIFRDMPVRDTGCWNAVISGFCQNGKAFEALNILDEMTLGGFEMDAMTLSTILPICAQ 189
A R+F M VRD WN++I+ + QN AL EM G D +T+ ++ I Q
Sbjct: 302 AQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLASIFGQ 361
Query: 190 VDDILRGLSIHLYVIK-QGLESDIFVSNALINMYAKFRELDKAKKIFNHMVVRDLVSWNS 366
+ D G ++H +V++ + LE DI + NAL+NMYAK +D A+ +F + RD++SWN+
Sbjct: 362 LSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVISWNT 421
Query: 367 IIAAYEQNNQPS 402
+I Y QN S
Sbjct: 422 LITGYAQNGLAS 433
Score = 79.3 bits (194), Expect = 3e-13
Identities = 38/124 (30%), Positives = 76/124 (61%), Gaps = 1/124 (0%)
Frame = +1
Query: 22 FRDMPVRDTGCWNAVISGFCQNGKAFEALNILDEM-TLGGFEMDAMTLSTILPICAQVDD 198
F+ + ++ WN+++S + + G+ ++++ + E+ +L G D T +L C + D
Sbjct: 106 FKHIQRKNIFSWNSMVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLAD 165
Query: 199 ILRGLSIHLYVIKQGLESDIFVSNALINMYAKFRELDKAKKIFNHMVVRDLVSWNSIIAA 378
G +H +V+K G E D++V+ +LI++Y++F ++ A K+F M VRD+ SWN++I+
Sbjct: 166 ---GEKMHCWVLKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISG 222
Query: 379 YEQN 390
+ QN
Sbjct: 223 FCQN 226
Score = 77.0 bits (188), Expect = 1e-12
Identities = 44/126 (34%), Positives = 69/126 (54%), Gaps = 1/126 (0%)
Frame = +1
Query: 4 EVAHRIFRDMPVRDTGCWNAVISGFCQNGKAFEALNILDEMTLGGFEMDAM-TLSTILPI 180
+ A +F +P RD WN +I+G+ QNG A EA++ + M G + T +ILP
Sbjct: 402 DCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYNMMEEGRTIVPNQGTWVSILPA 461
Query: 181 CAQVDDILRGLSIHLYVIKQGLESDIFVSNALINMYAKFRELDKAKKIFNHMVVRDLVSW 360
+ V + +G+ IH +IK L D+FV+ LI+MY K L+ A +F + V W
Sbjct: 462 YSHVGALQQGMKIHGRLIKNCLFLDVFVATCLIDMYGKCGRLEDAMSLFYEIPQETSVPW 521
Query: 361 NSIIAA 378
N+II++
Sbjct: 522 NAIISS 527
>ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499957|gb|AES81160.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 1092
Score = 182 bits (463), Expect = 2e-44
Identities = 84/133 (63%), Positives = 108/133 (81%)
Frame = +1
Query: 4 EVAHRIFRDMPVRDTGCWNAVISGFCQNGKAFEALNILDEMTLGGFEMDAMTLSTILPIC 183
+VAH++F DMPV+D G WNA+ISGFCQNG A AL +L+ M G +MD +T+++ILP+C
Sbjct: 173 DVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVC 232
Query: 184 AQVDDILRGLSIHLYVIKQGLESDIFVSNALINMYAKFRELDKAKKIFNHMVVRDLVSWN 363
AQ DD++ G+ IHL+V+K GL+SD+FVSNALINMY+KF L A+ +F+ M VRDLVSWN
Sbjct: 233 AQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWN 292
Query: 364 SIIAAYEQNNQPS 402
SIIAAYEQNN PS
Sbjct: 293 SIIAAYEQNNDPS 305
Score = 88.6 bits (218), Expect = 5e-16
Identities = 46/132 (34%), Positives = 74/132 (56%), Gaps = 1/132 (0%)
Frame = +1
Query: 10 AHRIFRDMPVRDTGCWNAVISGFCQNGKAFEALNILDEMTLGGFEMDAMTLSTILPICAQ 189
A +F M VRD WN++I+ + QN AL M LGG D +T+ ++ I +Q
Sbjct: 276 AQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQ 335
Query: 190 VDDILRGLSIHLYVIK-QGLESDIFVSNALINMYAKFRELDKAKKIFNHMVVRDLVSWNS 366
+ D SI +VI+ + L+ D+ + NAL+NMYAK ++ A +F+ + +D +SWN+
Sbjct: 336 LSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNT 395
Query: 367 IIAAYEQNNQPS 402
++ Y QN S
Sbjct: 396 LVTGYTQNGLAS 407
Score = 79.7 bits (195), Expect = 2e-13
Identities = 41/116 (35%), Positives = 68/116 (58%), Gaps = 4/116 (3%)
Frame = +1
Query: 55 WNAVISGFCQNGKAFEALNILDEMTL----GGFEMDAMTLSTILPICAQVDDILRGLSIH 222
WN++IS + + GK EA+N ++++ G D T IL C + D G +H
Sbjct: 88 WNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVD---GKKVH 144
Query: 223 LYVIKQGLESDIFVSNALINMYAKFRELDKAKKIFNHMVVRDLVSWNSIIAAYEQN 390
V K G E D+FV+ +L+++Y+++ LD A K+F M V+D+ SWN++I+ + QN
Sbjct: 145 CCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQN 200
Score = 76.3 bits (186), Expect = 2e-12
Identities = 42/124 (33%), Positives = 69/124 (55%), Gaps = 1/124 (0%)
Frame = +1
Query: 10 AHRIFRDMPVRDTGCWNAVISGFCQNGKAFEALNILDEMTLGGFEMDAM-TLSTILPICA 186
AH +F +P +DT WN +++G+ QNG A EA++ + M + T +I+P +
Sbjct: 378 AHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYS 437
Query: 187 QVDDILRGLSIHLYVIKQGLESDIFVSNALINMYAKFRELDKAKKIFNHMVVRDLVSWNS 366
V + +G+ IH +IK L D+FV+ LI++Y K L+ A +F + V WN+
Sbjct: 438 HVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNA 497
Query: 367 IIAA 378
IIA+
Sbjct: 498 IIAS 501
>gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 1083
Score = 182 bits (463), Expect = 2e-44
Identities = 84/133 (63%), Positives = 108/133 (81%)
Frame = +1
Query: 4 EVAHRIFRDMPVRDTGCWNAVISGFCQNGKAFEALNILDEMTLGGFEMDAMTLSTILPIC 183
+VAH++F DMPV+D G WNA+ISGFCQNG A AL +L+ M G +MD +T+++ILP+C
Sbjct: 173 DVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVC 232
Query: 184 AQVDDILRGLSIHLYVIKQGLESDIFVSNALINMYAKFRELDKAKKIFNHMVVRDLVSWN 363
AQ DD++ G+ IHL+V+K GL+SD+FVSNALINMY+KF L A+ +F+ M VRDLVSWN
Sbjct: 233 AQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWN 292
Query: 364 SIIAAYEQNNQPS 402
SIIAAYEQNN PS
Sbjct: 293 SIIAAYEQNNDPS 305
Score = 88.6 bits (218), Expect = 5e-16
Identities = 46/132 (34%), Positives = 74/132 (56%), Gaps = 1/132 (0%)
Frame = +1
Query: 10 AHRIFRDMPVRDTGCWNAVISGFCQNGKAFEALNILDEMTLGGFEMDAMTLSTILPICAQ 189
A +F M VRD WN++I+ + QN AL M LGG D +T+ ++ I +Q
Sbjct: 276 AQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQ 335
Query: 190 VDDILRGLSIHLYVIK-QGLESDIFVSNALINMYAKFRELDKAKKIFNHMVVRDLVSWNS 366
+ D SI +VI+ + L+ D+ + NAL+NMYAK ++ A +F+ + +D +SWN+
Sbjct: 336 LSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNT 395
Query: 367 IIAAYEQNNQPS 402
++ Y QN S
Sbjct: 396 LVTGYTQNGLAS 407
Score = 79.7 bits (195), Expect = 2e-13
Identities = 41/116 (35%), Positives = 68/116 (58%), Gaps = 4/116 (3%)
Frame = +1
Query: 55 WNAVISGFCQNGKAFEALNILDEMTL----GGFEMDAMTLSTILPICAQVDDILRGLSIH 222
WN++IS + + GK EA+N ++++ G D T IL C + D G +H
Sbjct: 88 WNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVD---GKKVH 144
Query: 223 LYVIKQGLESDIFVSNALINMYAKFRELDKAKKIFNHMVVRDLVSWNSIIAAYEQN 390
V K G E D+FV+ +L+++Y+++ LD A K+F M V+D+ SWN++I+ + QN
Sbjct: 145 CCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQN 200
Score = 76.3 bits (186), Expect = 2e-12
Identities = 42/124 (33%), Positives = 69/124 (55%), Gaps = 1/124 (0%)
Frame = +1
Query: 10 AHRIFRDMPVRDTGCWNAVISGFCQNGKAFEALNILDEMTLGGFEMDAM-TLSTILPICA 186
AH +F +P +DT WN +++G+ QNG A EA++ + M + T +I+P +
Sbjct: 378 AHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYS 437
Query: 187 QVDDILRGLSIHLYVIKQGLESDIFVSNALINMYAKFRELDKAKKIFNHMVVRDLVSWNS 366
V + +G+ IH +IK L D+FV+ LI++Y K L+ A +F + V WN+
Sbjct: 438 HVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNA 497
Query: 367 IIAA 378
IIA+
Sbjct: 498 IIAS 501
>ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33990-like [Vitis vinifera]
Length = 848
Score = 170 bits (430), Expect = 1e-40
Identities = 81/131 (61%), Positives = 101/131 (77%)
Frame = +1
Query: 7 VAHRIFRDMPVRDTGCWNAVISGFCQNGKAFEALNILDEMTLGGFEMDAMTLSTILPICA 186
+A +F DMP RD G WNA+ISG QNG A +AL++LDEM L G MD++T+++ILP+CA
Sbjct: 225 IARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCA 284
Query: 187 QVDDILRGLSIHLYVIKQGLESDIFVSNALINMYAKFRELDKAKKIFNHMVVRDLVSWNS 366
Q+ DI IHLYVIK GLE ++FVSNALINMYAKF L A+K+F M +RD+VSWNS
Sbjct: 285 QLGDISTATLIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNS 344
Query: 367 IIAAYEQNNQP 399
IIAAYEQN+ P
Sbjct: 345 IIAAYEQNDDP 355
Score = 96.7 bits (239), Expect = 2e-18
Identities = 48/132 (36%), Positives = 79/132 (59%), Gaps = 1/132 (0%)
Frame = +1
Query: 10 AHRIFRDMPVRDTGCWNAVISGFCQNGKAFEALNILDEMTLGGFEMDAMTLSTILPICAQ 189
A ++F+ M +RD WN++I+ + QN A +M L G E D +TL ++ I AQ
Sbjct: 327 AQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQ 386
Query: 190 VDDILRGLSIHLYVIKQG-LESDIFVSNALINMYAKFRELDKAKKIFNHMVVRDLVSWNS 366
D S+H +++++G L + + NA+++MYAK +D A K+FN + V+D+VSWN+
Sbjct: 387 SRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNT 446
Query: 367 IIAAYEQNNQPS 402
+I+ Y QN S
Sbjct: 447 LISGYTQNGLAS 458
Score = 78.6 bits (192), Expect = 5e-13
Identities = 44/125 (35%), Positives = 69/125 (55%), Gaps = 1/125 (0%)
Frame = +1
Query: 10 AHRIFRDMPVRDTGCWNAVISGFCQNGKAFEALNILDEMT-LGGFEMDAMTLSTILPICA 186
AH++F +PV+D WN +ISG+ QNG A EA+ + M +++ T +IL A
Sbjct: 429 AHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYA 488
Query: 187 QVDDILRGLSIHLYVIKQGLESDIFVSNALINMYAKFRELDKAKKIFNHMVVRDLVSWNS 366
V + +G+ IH ++IK L D+FV LI++Y K L A +F + V WN+
Sbjct: 489 HVGALQQGMRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPWNA 548
Query: 367 IIAAY 381
II+ +
Sbjct: 549 IISCH 553
Score = 76.3 bits (186), Expect = 2e-12
Identities = 42/124 (33%), Positives = 71/124 (57%), Gaps = 1/124 (0%)
Frame = +1
Query: 22 FRDMPVRDTGCWNAVISGFCQNGKAFEALNILDEMTL-GGFEMDAMTLSTILPICAQVDD 198
F + +D WN++IS + +NG EA++ ++ L F+ D T +L C + D
Sbjct: 131 FDQIQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTLVD 190
Query: 199 ILRGLSIHLYVIKQGLESDIFVSNALINMYAKFRELDKAKKIFNHMVVRDLVSWNSIIAA 378
G IH +V K G + D+FV+ +LI+MY++F + A+ +F+ M RD+ SWN++I+
Sbjct: 191 ---GRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISG 247
Query: 379 YEQN 390
QN
Sbjct: 248 LIQN 251
>ref|XP_002518758.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223542139|gb|EEF43683.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 379
Score = 169 bits (427), Expect = 3e-40
Identities = 80/128 (62%), Positives = 101/128 (78%)
Frame = +1
Query: 10 AHRIFRDMPVRDTGCWNAVISGFCQNGKAFEALNILDEMTLGGFEMDAMTLSTILPICAQ 189
A ++F +MP+RD G WNA+ISG+CQNG E L+I+DEM G MDA +++ILP+CA+
Sbjct: 11 ARKLFDEMPIRDCGSWNAMISGYCQNGNVVEVLDIVDEMRKDGVAMDAFAVASILPVCAK 70
Query: 190 VDDILRGLSIHLYVIKQGLESDIFVSNALINMYAKFRELDKAKKIFNHMVVRDLVSWNSI 369
++D+L G IHL VIK GLE D FVSNALI MYAKF L A+K+F+HMVVRD+VSWNSI
Sbjct: 71 LNDVLSGKLIHLLVIKLGLEFDSFVSNALIAMYAKFGSLGLAQKVFDHMVVRDIVSWNSI 130
Query: 370 IAAYEQNN 393
IAAYEQN+
Sbjct: 131 IAAYEQND 138
Score = 92.0 bits (227), Expect = 4e-17
Identities = 46/133 (34%), Positives = 77/133 (57%), Gaps = 1/133 (0%)
Frame = +1
Query: 7 VAHRIFRDMPVRDTGCWNAVISGFCQNGKAFEALNILDEMTLGGFEMDAMTLSTILPICA 186
+A ++F M VRD WN++I+ + QN A A + D+M G D +T+ ++ I A
Sbjct: 111 LAQKVFDHMVVRDIVSWNSIIAAYEQNDDAATARSFFDKMRQIGVRPDLLTVLSLASIVA 170
Query: 187 QVDDILRGLSIHLYVIKQG-LESDIFVSNALINMYAKFRELDKAKKIFNHMVVRDLVSWN 363
Q++D SIH +V ++G D + NA+++MYAK + A+ +F + V+D++SWN
Sbjct: 171 QLNDHQNSRSIHGFVTRRGWFMKDTVIGNAVVDMYAKLGATESARAVFERLPVKDVISWN 230
Query: 364 SIIAAYEQNNQPS 402
++I Y QN S
Sbjct: 231 TLITGYAQNGLAS 243
Score = 83.6 bits (205), Expect = 2e-14
Identities = 45/128 (35%), Positives = 71/128 (55%), Gaps = 1/128 (0%)
Frame = +1
Query: 1 SEVAHRIFRDMPVRDTGCWNAVISGFCQNGKAFEALNILDEMT-LGGFEMDAMTLSTILP 177
+E A +F +PV+D WN +I+G+ QNG A EA+ + + M T +ILP
Sbjct: 211 TESARAVFERLPVKDVISWNTLITGYAQNGLASEAIEVYNMMEECKEVSPTQGTWVSILP 270
Query: 178 ICAQVDDILRGLSIHLYVIKQGLESDIFVSNALINMYAKFRELDKAKKIFNHMVVRDLVS 357
+ + + +G+ H +VIK L D+FV LI+MY K +LD A +F + +D V
Sbjct: 271 AYSHLGALHQGMRTHGHVIKNSLHLDVFVGTCLIDMYGKCGKLDDAMSLFYEVPRKDAVP 330
Query: 358 WNSIIAAY 381
WN+II+ +
Sbjct: 331 WNAIISCH 338