BLASTX nr result

ID: Lithospermum22_contig00046573 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00046573
         (262 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002332211.1| predicted protein [Populus trichocarpa] gi|2...    77   1e-12
ref|XP_002329612.1| predicted protein [Populus trichocarpa] gi|2...    77   1e-12
ref|XP_002313562.1| predicted protein [Populus trichocarpa] gi|2...    77   1e-12
ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|2...    77   2e-12
ref|NP_567266.1| RNA-directed DNA polymerase (reverse transcript...    71   1e-10

>ref|XP_002332211.1| predicted protein [Populus trichocarpa] gi|222874875|gb|EEF12006.1|
            predicted protein [Populus trichocarpa]
          Length = 1386

 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
 Frame = -1

Query: 259  ECIGWAHVAWHAKAIPRHSFIVWMLYSRRLCTRDRLINWGMIDSNECVFC-----GAEHL 95
            + + W  + W   A+PRHSF++WM   ++L T+D+L  +G+   N C  C        HL
Sbjct: 1211 QMVEWHDIVWFKNAVPRHSFLLWMAVQQKLTTQDKLYRFGIHGPNRCSLCLRNNEDHNHL 1270

Query: 94   FFECGYSACIWRHVLQRMNKYRAVKGW 14
            FFEC Y+  IW  V  R +  R  KGW
Sbjct: 1271 FFECSYTKAIWWDVCDRCDIPRMTKGW 1297


>ref|XP_002329612.1| predicted protein [Populus trichocarpa] gi|222870351|gb|EEF07482.1|
            predicted protein [Populus trichocarpa]
          Length = 1046

 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
 Frame = -1

Query: 259  ECIGWAHVAWHAKAIPRHSFIVWMLYSRRLCTRDRLINWGMIDSNECVFC-----GAEHL 95
            + + W  + W   A+PRHSF++WM+  ++L T+D+L  +G+   N C  C        HL
Sbjct: 871  QLVEWHDIVWFKNAVPRHSFLLWMVVQQKLTTQDKLHRFGIHGPNRCSLCLRNNEDHNHL 930

Query: 94   FFECGYSACIWRHVLQRMNKYRAVKGW 14
            FFEC Y+  IW  V  R +  R  KGW
Sbjct: 931  FFECSYTKAIWWDVCDRCDIPRMTKGW 957


>ref|XP_002313562.1| predicted protein [Populus trichocarpa] gi|222849970|gb|EEE87517.1|
           predicted protein [Populus trichocarpa]
          Length = 331

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
 Frame = -1

Query: 253 IGWAHVAWHAKAIPRHSFIVWMLYSRRLCTRDRLINWGMIDSNECVFC-----GAEHLFF 89
           + W  + W   A+PRHSF++WM+  ++L T+D+L  +G+   N C  C        HLFF
Sbjct: 158 VEWHDIVWFKNAVPRHSFLLWMVVQQKLTTQDKLHRFGIHGPNRCSLCLRNNEDHNHLFF 217

Query: 88  ECGYSACIWRHVLQRMNKYRAVKGW 14
           EC Y+  IW  V  R +  R  KGW
Sbjct: 218 ECSYTKAIWWDVCDRCDIPRMTKGW 242


>ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|222873039|gb|EEF10170.1|
           predicted protein [Populus trichocarpa]
          Length = 517

 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 33/87 (37%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
 Frame = -1

Query: 259 ECIGWAHVAWHAKAIPRHSFIVWMLYSRRLCTRDRLINWGMIDSNECVFC-----GAEHL 95
           + + W  + W   A+PRHSF++WM   ++L T+D+L  +G+   N C  C        HL
Sbjct: 338 QMVEWHDIVWFKNAVPRHSFLLWMAVQQKLTTQDKLHRFGIHGPNRCSLCLRNNEDHNHL 397

Query: 94  FFECGYSACIWRHVLQRMNKYRAVKGW 14
           FFEC Y+  IW  V  R +  R  KGW
Sbjct: 398 FFECSYTKAIWWDVCDRCDIPRMTKGW 424


>ref|NP_567266.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
           protein [Arabidopsis thaliana]
           gi|5732057|gb|AAD48956.1|AF149414_5 contains similarity
           to a family of Arabidopsis thaliana predicted proteins,
           which have similarity to reverse transcriptases; see
           T14P8.10 (GB:AF069298) [Arabidopsis thaliana]
           gi|7267223|emb|CAB80830.1| AT4g04650 [Arabidopsis
           thaliana] gi|332657009|gb|AEE82409.1| RNA-directed DNA
           polymerase (reverse transcriptase)-related family
           protein [Arabidopsis thaliana]
          Length = 332

 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
 Frame = -1

Query: 253 IGWAHVAWHAKAIPRHSFIVWMLYSRRLCTRDRLINWGMIDSNECVFCGAE-----HLFF 89
           + W    W    +P+H+FI W++   RL TRDRL NWG+    EC+ C A      HLFF
Sbjct: 127 VPWHKAVWFKNHVPKHAFICWVVAWNRLHTRDRLQNWGLSIPAECLLCNAHDDSRAHLFF 186

Query: 88  ECGYSACIWR 59
           EC +S  +WR
Sbjct: 187 ECQFSGVVWR 196


Top