BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00046360
         (380 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADD31152.1| RNA polymerase beta'' subunit protein [Ehretia ac...   205   3e-51
ref|YP_004891590.1| rpoC2 gene product (chloroplast) [Nicotiana ...   202   2e-50
gb|ADO13878.1| RNA polymerase beta subunit [Ilex crenata]             199   1e-49
gb|ADD31153.1| RNA polymerase beta'' subunit protein [Ilex cornuta]   198   3e-49
gb|ABD93759.1| RNA polymerase beta chain [Ilex sp. Qiu 94038]         198   3e-49

>gb|ADD31152.1| RNA polymerase beta'' subunit protein [Ehretia acuminata]
          Length = 1381

 Score =  205 bits (522), Expect = 3e-51
 Identities = 100/126 (79%), Positives = 108/126 (85%)
 Frame = +2

Query: 2   WSTDVYHAPEFIYGNVHLLPKTSHLWILLGGPCSSSLVSPSLHKDQDQINANSPYVKRGE 181
           WSTDVYHAPEF YGNVHLLPKTSHLWILLGGP  SSLV  SLHKDQDQ+NA+S  VK G+
Sbjct: 454 WSTDVYHAPEFTYGNVHLLPKTSHLWILLGGPYRSSLVFLSLHKDQDQMNAHSLSVKGGD 513

Query: 182 TSNLLVTNNRAIHKFFSSDFSGKEEGRIVDYSDLNRIICVDSCNIIYSPILHDNSDLLSK 361
           TSN  VTN++  HKFFSSDFSGK+E +I DYSDLNRIIC  SCN+IY  ILHDNSDLLSK
Sbjct: 514 TSNRSVTNDQVRHKFFSSDFSGKKEDKIPDYSDLNRIICTGSCNLIYPAILHDNSDLLSK 573

Query: 362 RRRNRF 379
           RRRNRF
Sbjct: 574 RRRNRF 579


>ref|YP_004891590.1| rpoC2 gene product (chloroplast) [Nicotiana undulata]
           gi|347453891|gb|AEO95549.1| RNA polymerase beta''
           subunit (chloroplast) [Nicotiana undulata]
           gi|347454002|gb|AEO95659.1| RNA polymerase beta''
           subunit [synthetic construct]
          Length = 1392

 Score =  202 bits (514), Expect = 2e-50
 Identities = 98/126 (77%), Positives = 108/126 (85%)
 Frame = +2

Query: 2   WSTDVYHAPEFIYGNVHLLPKTSHLWILLGGPCSSSLVSPSLHKDQDQINANSPYVKRGE 181
           WSTDVYHAPEF YGNVHLLPKTSHLWILLGGPC SSLV  S+HKDQDQ+NA+S   KR  
Sbjct: 454 WSTDVYHAPEFTYGNVHLLPKTSHLWILLGGPCRSSLVYLSIHKDQDQMNAHSLSGKRRY 513

Query: 182 TSNLLVTNNRAIHKFFSSDFSGKEEGRIVDYSDLNRIICVDSCNIIYSPILHDNSDLLSK 361
           TSNL VTN++A  KFFSSDFSGK+E RI DYSDLNRIIC    N++YSPILH+NSDLLSK
Sbjct: 514 TSNLSVTNDQARQKFFSSDFSGKKEDRISDYSDLNRIICAGQYNLVYSPILHENSDLLSK 573

Query: 362 RRRNRF 379
           RRRN+F
Sbjct: 574 RRRNKF 579


>gb|ADO13878.1| RNA polymerase beta subunit [Ilex crenata]
          Length = 1182

 Score =  199 bits (507), Expect = 1e-49
 Identities = 97/126 (76%), Positives = 105/126 (83%)
 Frame = +2

Query: 2   WSTDVYHAPEFIYGNVHLLPKTSHLWILLGGPCSSSLVSPSLHKDQDQINANSPYVKRGE 181
           WSTDVYHAPEF YGNVHLLPKTSHLWILLG PC SSLVSPSLHKDQDQ+NA+S  VKR  
Sbjct: 440 WSTDVYHAPEFTYGNVHLLPKTSHLWILLGQPCRSSLVSPSLHKDQDQMNAHSLSVKRRY 499

Query: 182 TSNLLVTNNRAIHKFFSSDFSGKEEGRIVDYSDLNRIICVDSCNIIYSPILHDNSDLLSK 361
            SNL VTNN+  HKFF SDFSGK+E RI DYS+LNRIIC   CN+IY  IL +NSDLL+K
Sbjct: 500 ISNLSVTNNQVRHKFFRSDFSGKKEDRIPDYSELNRIICTGRCNLIYPAILPENSDLLAK 559

Query: 362 RRRNRF 379
            RRNRF
Sbjct: 560 SRRNRF 565


>gb|ADD31153.1| RNA polymerase beta'' subunit protein [Ilex cornuta]
          Length = 1384

 Score =  198 bits (504), Expect = 3e-49
 Identities = 97/126 (76%), Positives = 104/126 (82%)
 Frame = +2

Query: 2   WSTDVYHAPEFIYGNVHLLPKTSHLWILLGGPCSSSLVSPSLHKDQDQINANSPYVKRGE 181
           WSTDVYHAPEF YGNVHLLPKTSHLWILLG PC SSLVSPSLHKDQDQ+NA S  VKR  
Sbjct: 454 WSTDVYHAPEFTYGNVHLLPKTSHLWILLGQPCRSSLVSPSLHKDQDQMNAYSLSVKRRY 513

Query: 182 TSNLLVTNNRAIHKFFSSDFSGKEEGRIVDYSDLNRIICVDSCNIIYSPILHDNSDLLSK 361
            SNL VTNN+  HKFF SDFSGK+E RI DYS+LNRIIC   CN+IY  IL +NSDLL+K
Sbjct: 514 ISNLSVTNNQVRHKFFRSDFSGKKEDRIPDYSELNRIICTGRCNLIYPAILPENSDLLAK 573

Query: 362 RRRNRF 379
            RRNRF
Sbjct: 574 SRRNRF 579


>gb|ABD93759.1| RNA polymerase beta chain [Ilex sp. Qiu 94038]
          Length = 866

 Score =  198 bits (504), Expect = 3e-49
 Identities = 97/126 (76%), Positives = 104/126 (82%)
 Frame = +2

Query: 2   WSTDVYHAPEFIYGNVHLLPKTSHLWILLGGPCSSSLVSPSLHKDQDQINANSPYVKRGE 181
           WSTDVYHAPEF YGNVHLLPKTSHLWILLG PC SSLVSPSLHKDQDQ+NA S  VKR  
Sbjct: 5   WSTDVYHAPEFTYGNVHLLPKTSHLWILLGQPCRSSLVSPSLHKDQDQMNAYSLSVKRRY 64

Query: 182 TSNLLVTNNRAIHKFFSSDFSGKEEGRIVDYSDLNRIICVDSCNIIYSPILHDNSDLLSK 361
            SNL VTNN+  HKFF SDFSGK+E RI DYS+LNRIIC   CN+IY  IL +NSDLL+K
Sbjct: 65  ISNLSVTNNQVRHKFFRSDFSGKKEDRIPDYSELNRIICTGRCNLIYPAILPENSDLLAK 124

Query: 362 RRRNRF 379
            RRNRF
Sbjct: 125 SRRNRF 130