BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00046317
         (359 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAO73529.1| gag-pol polyprotein [Glycine max]                       86   2e-15
gb|AAC64917.1| gag-pol polyprotein [Glycine max]                       86   3e-15
gb|AAO73525.1| gag-pol polyprotein [Glycine max]                       85   5e-15
ref|NP_001235160.1| gag-protease polyprotein [Glycine max] gi|74...    85   7e-15
gb|AAO73521.1| gag-pol polyprotein [Glycine max]                       82   3e-14

>gb|AAO73529.1| gag-pol polyprotein [Glycine max]
          Length = 1577

 Score = 86.3 bits (212), Expect = 2e-15
 Identities = 59/158 (37%), Positives = 80/158 (50%), Gaps = 43/158 (27%)
 Frame = -2

Query: 349 LGEKMSEEKIVRKILRSFPKRFNSKVVVMEEANDISIIRVDEVFGSFITFELSLDDRRCK 170
           LGE+M++EK+VRKILRS PKRF+ KV  +EEA DI  +RVDE+ GS  TFEL L DR   
Sbjct: 162 LGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGSLQTFELGLSDR--T 219

Query: 169 DKKFSNIV------------EPEVSDSLFNS-----------------RYLP-----DTN 92
           +KK  N+             + +  + L N+                 R  P       +
Sbjct: 220 EKKSKNLAFVSNDEGEEDEYDLDTDEGLTNAVVFLGKQFNKVLNRMDRRQKPHVRNISLD 279

Query: 91  VEKGLDQQ---------TIEIQCQGCEGYGHNQIQYPT 5
           + KG + Q         +  IQC+GCEGYGH + + PT
Sbjct: 280 IRKGSEYQRKSDEKPSHSKGIQCRGCEGYGHIKAECPT 317


>gb|AAC64917.1| gag-pol polyprotein [Glycine max]
          Length = 1550

 Score = 85.9 bits (211), Expect = 3e-15
 Identities = 59/159 (37%), Positives = 80/159 (50%), Gaps = 44/159 (27%)
 Frame = -2

Query: 349 LGEKMSEEKIVRKILRSFPKRFNSKVVVMEEANDISIIRVDEVFGSFITFELSLDDRRCK 170
           LGE+M++EK+VRKILRS PKRF+ KV  +EEA DI  +RVDE+ GS  TFEL L DR   
Sbjct: 135 LGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGSLQTFELGLSDR--T 192

Query: 169 DKKFSNIV------------EPEVSDSLFNS-----------------------RYLPDT 95
           +KK  N+             + +  + L N+                       R +P  
Sbjct: 193 EKKSKNLAFVSNDEGEEDEYDLDTDEGLTNAVVLLGKQFNKVLNRMDRRQKPHVRNIP-F 251

Query: 94  NVEKGLDQQ---------TIEIQCQGCEGYGHNQIQYPT 5
           ++ KG + Q         +  IQC GCEGYGH + + PT
Sbjct: 252 DIRKGSEYQKRSDEKPSHSKGIQCHGCEGYGHIKAECPT 290


>gb|AAO73525.1| gag-pol polyprotein [Glycine max]
          Length = 1576

 Score = 85.1 bits (209), Expect = 5e-15
 Identities = 58/158 (36%), Positives = 78/158 (49%), Gaps = 43/158 (27%)
 Frame = -2

Query: 349 LGEKMSEEKIVRKILRSFPKRFNSKVVVMEEANDISIIRVDEVFGSFITFELSLDDRRCK 170
           LGE+M++EK+VRKILRS PKRF+ KV  +EEA DI  +RVDE+ GS  TFEL L DR  K
Sbjct: 163 LGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGSLQTFELGLSDRNEK 222

Query: 169 ---------------------------------DKKFSNIV-------EPEVSDSLFNSR 110
                                             K+F+ ++       +P V +  F+ R
Sbjct: 223 KSKNLAFVSNDEGEEDEYDLDTDEGLTNAVGLLGKQFNKVLNRMDRRQKPHVRNIPFDIR 282

Query: 109 YLPDTNVEKGLDQQTIE---IQCQGCEGYGHNQIQYPT 5
               +   K  D++      IQC GCEGYGH + + PT
Sbjct: 283 --KGSEYHKKSDEKPSHSKGIQCHGCEGYGHIKAECPT 318


>ref|NP_001235160.1| gag-protease polyprotein [Glycine max] gi|7488678|pir||T06419
           gag-proteinase polyprotein - soybean retrovirus-like
           element gi|905361|gb|AAC18777.1| gag-protease
           polyprotein [Glycine max]
          Length = 640

 Score = 84.7 bits (208), Expect = 7e-15
 Identities = 58/159 (36%), Positives = 79/159 (49%), Gaps = 44/159 (27%)
 Frame = -2

Query: 349 LGEKMSEEKIVRKILRSFPKRFNSKVVVMEEANDISIIRVDEVFGSFITFELSLDDRRCK 170
           LGE+M++EK+VRKILRS PKRF+ KV  +EEA DI  +RVDE+ GS  TFEL L DR   
Sbjct: 162 LGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDICNLRVDELIGSLQTFELGLSDR--T 219

Query: 169 DKKFSNIV------------EPEVSDSLFNS-----------------------RYLPDT 95
           +KK  N+             + +  + L N+                       R +P  
Sbjct: 220 EKKSKNLAFVSNDEGEEDEYDLDTDEGLTNAVVLLGKQFNKVLNRMDRRQKPHVRNIP-F 278

Query: 94  NVEKGLDQQ---------TIEIQCQGCEGYGHNQIQYPT 5
           ++ KG + Q         +   QC GCEGYGH + + PT
Sbjct: 279 DIRKGSEYQKRSDEKPSHSKGFQCHGCEGYGHIKAECPT 317


>gb|AAO73521.1| gag-pol polyprotein [Glycine max]
          Length = 1574

 Score = 82.4 bits (202), Expect = 3e-14
 Identities = 57/159 (35%), Positives = 79/159 (49%), Gaps = 44/159 (27%)
 Frame = -2

Query: 349 LGEKMSEEKIVRKILRSFPKRFNSKVVVMEEANDISIIRVDEVFGSFITFELSLDDRRCK 170
           LGE++++EK+VRKILRS PKRF+ KV  +EEA DI  +RVDE+ GS  TFEL L DR  K
Sbjct: 162 LGERITDEKLVRKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGSLQTFELGLSDRAEK 221

Query: 169 ---------------------------------DKKFSNIV-------EPEVSDSLFN-- 116
                                             K+F+ ++       +P V +  F+  
Sbjct: 222 KSKNLAFVSNDEGEEDEYDLNTDEGLTNAVVLLGKQFNKVLNRMDKRQKPHVQNIPFDIR 281

Query: 115 --SRYLPDTNVEKGLDQQTIEIQCQGCEGYGHNQIQYPT 5
             S+Y   ++V+      +  IQC GCEGYGH   + PT
Sbjct: 282 KGSKYQKKSDVK---PSHSKGIQCHGCEGYGHIIAECPT 317