BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00046075
         (600 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003544295.1| PREDICTED: zinc finger CCCH domain-containin...    77   2e-12
ref|NP_197389.1| RNA-directed DNA polymerase (reverse transcript...    64   2e-08
gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata sub...    63   3e-08
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta...    63   4e-08
ref|XP_002329612.1| predicted protein [Populus trichocarpa] gi|2...    61   1e-07

>ref|XP_003544295.1| PREDICTED: zinc finger CCCH domain-containing protein 66-like
           [Glycine max]
          Length = 1089

 Score = 77.4 bits (189), Expect = 2e-12
 Identities = 44/128 (34%), Positives = 63/128 (49%), Gaps = 3/128 (2%)
 Frame = +3

Query: 72  VWWWKIPWFKGYVPKFISTTWMLCLGRLPTGNSLVAWKIIKDDKCHYRQEKKTNQHLFFL 251
           V W K+ +     P+ +   W+ C  RL T   L  + I+ D +C + +E +T QHL F 
Sbjct: 249 VSWRKVFFNNEARPRALFILWLACHNRLATKERLYRFGIVNDARCAFCEEVETVQHLLFE 308

Query: 252 SSHSAAI*RKLLMYLNELHQPQNYNNELQWIITKGVGKNFKSRL---CFSAVIYHIWIAR 422
                AI +K+L +LN  H+P  +  EL WI     GKN+KSR     F   +Y  W  R
Sbjct: 309 CGEMYAIWKKVLDWLNVDHEPAGWLQELDWIEDTSKGKNWKSRFLKTSFVETVYRCWKYR 368

Query: 423 NRAIFENI 446
           N  I E +
Sbjct: 369 NNKIHEKV 376


>ref|NP_197389.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
           protein [Arabidopsis thaliana]
           gi|332005241|gb|AED92624.1| RNA-directed DNA polymerase
           (reverse transcriptase)-related family protein
           [Arabidopsis thaliana]
          Length = 295

 Score = 64.3 bits (155), Expect = 2e-08
 Identities = 44/152 (28%), Positives = 66/152 (43%), Gaps = 3/152 (1%)
 Frame = +3

Query: 78  WWKIPWFKGYVPKFISTTWMLCLGRLPTGNSLVAWKI-IKDDKCHYRQEKKTNQHLFFLS 254
           W K+ WFK Y+P+F   TWM  L RLPT + L  W + I           +T+ HLFF  
Sbjct: 127 WAKVVWFKEYIPRFSLITWMSFLERLPTRDRLRGWGMNIPSSWVLCSNGDETHAHLFFEC 186

Query: 255 SHSAAI*RKLLMYLNELHQPQNYNNELQWIITKGVGKNFKS--RLCFSAVIYHIWIARNR 428
           S S AI             P        WI+   +  +  +  +L   + +YH+W  RN 
Sbjct: 187 SFSLAIWEFFASKFRP-SPPFGLPAASSWILQLPLRSHSTTILKLLLQSAVYHVWKERNA 245

Query: 429 AIFENIRNDVAHIVATCVTTITYRMNSWSKVD 524
            IF +I +  + +      T+  R+ S+   D
Sbjct: 246 RIFTSISSSASSLRLAIDRTMRNRLLSFPSAD 277


>gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata subsp. lyrata]
          Length = 441

 Score = 63.2 bits (152), Expect = 3e-08
 Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 3/119 (2%)
 Frame = +3

Query: 78  WWKIPWFKGYVPKFISTTWMLCLGRLPTGNSLVAWKIIKDDKCHYRQEK-KTNQHLFFLS 254
           W++  WF    PK+   TW+    RL TG+ +++W    +  C + QE+ +T  HLFF  
Sbjct: 275 WYQGIWFSHATPKYSFITWLATKNRLSTGDRMMSWNAGVNLSCVFCQEQTETRNHLFFTC 334

Query: 255 SHSAAI*RKLLMYLNELHQPQNYNNELQWIITKGVGKN--FKSRLCFSAVIYHIWIARN 425
            +S  +   L   L   H   ++   L+ +  K +G N  F  R  F  ++Y IW  RN
Sbjct: 335 RYSREVWSGLTSKLLTRHYSTDWTTILKLLTDKTLGNNRLFLLRYAFQILVYSIWKERN 393


>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1529

 Score = 62.8 bits (151), Expect = 4e-08
 Identities = 44/170 (25%), Positives = 75/170 (44%), Gaps = 5/170 (2%)
 Frame = +3

Query: 78   WWKIPWFKGYVPKFISTTWMLCLGRLPTGNSLVAW---KIIKDDKCHYRQEKKTNQHLFF 248
            W+K  WF    PK+    W+    RL TG+ + AW   +++    C+  +E  T  HLFF
Sbjct: 1354 WYKGVWFPYSTPKYSFLLWLTVQNRLSTGDRIKAWNSGQLVTCTLCNNAEE--TRDHLFF 1411

Query: 249  LSSHSAAI*RKLLMYLNELHQPQNYNNELQWIITKGVGKN--FKSRLCFSAVIYHIWIAR 422
               +++ +   L   L   +  +++N     + T  + ++  F  R  F A IYHIW  R
Sbjct: 1412 SCQYTSYVWEALTQRLLSTNYSRDWNRLFTLLCTSNLPRDHLFLFRYVFQASIYHIWRER 1471

Query: 423  NRAIFENIRNDVAHIVATCVTTITYRMNSWSKVDRS*ANWKLCIDWGFSL 572
            N      I +    ++     T+  R++S    D    N+  C+   FS+
Sbjct: 1472 NARRHGEISSPTNRLIKLIDKTVRNRISSIR--DTGDHNYNDCMQLWFSM 1519


>ref|XP_002329612.1| predicted protein [Populus trichocarpa] gi|222870351|gb|EEF07482.1|
            predicted protein [Populus trichocarpa]
          Length = 1046

 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 4/129 (3%)
 Frame = +3

Query: 72   VWWWKIPWFKGYVPKFISTTWMLCLGRLPTGNSLVAWKIIKDDKCHY-RQEKKTNQHLFF 248
            V W  I WFK  VP+     WM+   +L T + L  + I   ++C    +  + + HLFF
Sbjct: 873  VEWHDIVWFKNAVPRHSFLLWMVVQQKLTTQDKLHRFGIHGPNRCSLCLRNNEDHNHLFF 932

Query: 249  LSSHSAAI*RKLLMYLNELHQPQNYNNELQWIITKGVGK---NFKSRLCFSAVIYHIWIA 419
              S++ AI   +    +     + ++  ++W      GK   NF  +L F+A +YH+W  
Sbjct: 933  ECSYTKAIWWDVCDRCDIPRMTKGWDEWIRWATVSWHGKSFINFSRKLSFAATVYHVWQE 992

Query: 420  RNRAIFENI 446
            RN  IF  +
Sbjct: 993  RNARIFAGL 1001