BLASTX nr result

ID: Lithospermum22_contig00046016 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00046016
         (307 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002312197.1| dicer-like protein [Populus trichocarpa] gi|...   127   9e-28
gb|AFD22619.1| dicer-like 2 protein [Nicotiana attenuata]             124   8e-27
emb|CAN77284.1| hypothetical protein VITISV_043738 [Vitis vinifera]   121   5e-26
ref|XP_002269915.2| PREDICTED: endoribonuclease Dicer homolog 2-...   119   3e-25
emb|CBI17597.3| unnamed protein product [Vitis vinifera]              119   3e-25

>ref|XP_002312197.1| dicer-like protein [Populus trichocarpa]
           gi|222852017|gb|EEE89564.1| dicer-like protein [Populus
           trichocarpa]
          Length = 1468

 Score =  127 bits (319), Expect = 9e-28
 Identities = 57/102 (55%), Positives = 80/102 (78%), Gaps = 1/102 (0%)
 Frame = +1

Query: 4   KVRKFLASGETMRKDVLSNASVPCEPL-DLCKEVYYKVEATGAIVSLTSSIALLNFYCSR 180
           ++  +LASG+ MR++ L +AS+PC PL D   + +Y+VE TGA+VSL+SS++L+ FYCSR
Sbjct: 561 RLENYLASGDIMRRESLRHASIPCSPLLDELDDEFYRVEGTGAVVSLSSSVSLIYFYCSR 620

Query: 181 LPSDGYFKPRPRCVIDEVNGSCTMHLPKSCPIPRVIVQEDIK 306
           LPSDGYFKP PRC+ID+   +CT+HLPKS P+  + VQ +IK
Sbjct: 621 LPSDGYFKPAPRCIIDKETMTCTLHLPKSSPVQTICVQGNIK 662


>gb|AFD22619.1| dicer-like 2 protein [Nicotiana attenuata]
          Length = 1403

 Score =  124 bits (311), Expect = 8e-27
 Identities = 55/97 (56%), Positives = 78/97 (80%), Gaps = 2/97 (2%)
 Frame = +1

Query: 4   KVRKFLASGETMRKDVLSNASVPCEPLD--LCKEVYYKVEATGAIVSLTSSIALLNFYCS 177
           +++ ++ SGE MR++ L +AS+PC PLD  L  E YYKVE TGA+V+L+SS++LL FYCS
Sbjct: 509 RMQNYMQSGEIMRQESLRHASIPCSPLDDELHDEPYYKVETTGAVVTLSSSVSLLYFYCS 568

Query: 178 RLPSDGYFKPRPRCVIDEVNGSCTMHLPKSCPIPRVI 288
           RLPSDGY+KP PRC I++   +CT++LPK+CP+ +VI
Sbjct: 569 RLPSDGYYKPSPRCAIEKETETCTLYLPKNCPLQKVI 605


>emb|CAN77284.1| hypothetical protein VITISV_043738 [Vitis vinifera]
          Length = 1296

 Score =  121 bits (304), Expect = 5e-26
 Identities = 61/103 (59%), Positives = 79/103 (76%), Gaps = 2/103 (1%)
 Frame = +1

Query: 4   KVRKFLASGETMRKDVLSNASVPCEPL--DLCKEVYYKVEATGAIVSLTSSIALLNFYCS 177
           ++R +L SG+ MR++ L NAS+PC PL   L  E +Y VE+T AIV+L+SSI LL FYCS
Sbjct: 413 RLRTYLDSGKVMREESLRNASLPCAPLKSSLDDEEFYWVESTRAIVTLSSSIGLLYFYCS 472

Query: 178 RLPSDGYFKPRPRCVIDEVNGSCTMHLPKSCPIPRVIVQEDIK 306
           RLPSDGYFKP PRC I++  G+CT++LPKSCPI  V V+ +IK
Sbjct: 473 RLPSDGYFKPTPRCSINQDMGTCTIYLPKSCPIQTVSVRGNIK 515


>ref|XP_002269915.2| PREDICTED: endoribonuclease Dicer homolog 2-like [Vitis vinifera]
          Length = 1394

 Score =  119 bits (297), Expect = 3e-25
 Identities = 60/103 (58%), Positives = 78/103 (75%), Gaps = 2/103 (1%)
 Frame = +1

Query: 4   KVRKFLASGETMRKDVLSNASVPCEPL--DLCKEVYYKVEATGAIVSLTSSIALLNFYCS 177
           ++R +L SG+ MR++ L NAS+PC PL   L  E +Y VE+T AIV+L+SSI LL FYCS
Sbjct: 511 RLRTYLDSGKVMREESLRNASLPCAPLKSSLDDEEFYWVESTRAIVTLSSSIGLLYFYCS 570

Query: 178 RLPSDGYFKPRPRCVIDEVNGSCTMHLPKSCPIPRVIVQEDIK 306
           RLPSDGYFKP PRC I++  G+CT++ PKSCPI  V V+ +IK
Sbjct: 571 RLPSDGYFKPTPRCSINQDMGTCTIYHPKSCPIQTVSVRGNIK 613


>emb|CBI17597.3| unnamed protein product [Vitis vinifera]
          Length = 1340

 Score =  119 bits (297), Expect = 3e-25
 Identities = 60/103 (58%), Positives = 78/103 (75%), Gaps = 2/103 (1%)
 Frame = +1

Query: 4   KVRKFLASGETMRKDVLSNASVPCEPL--DLCKEVYYKVEATGAIVSLTSSIALLNFYCS 177
           ++R +L SG+ MR++ L NAS+PC PL   L  E +Y VE+T AIV+L+SSI LL FYCS
Sbjct: 457 RLRTYLDSGKVMREESLRNASLPCAPLKSSLDDEEFYWVESTRAIVTLSSSIGLLYFYCS 516

Query: 178 RLPSDGYFKPRPRCVIDEVNGSCTMHLPKSCPIPRVIVQEDIK 306
           RLPSDGYFKP PRC I++  G+CT++ PKSCPI  V V+ +IK
Sbjct: 517 RLPSDGYFKPTPRCSINQDMGTCTIYHPKSCPIQTVSVRGNIK 559


Top