BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00044833
         (397 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002521253.1| pentatricopeptide repeat-containing protein,...   154   9e-36
ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containi...   152   2e-35
ref|XP_002306200.1| predicted protein [Populus trichocarpa] gi|2...   152   4e-35
ref|NP_195239.1| pentatricopeptide repeat-containing protein [Ar...   135   3e-30
ref|XP_002867090.1| pentatricopeptide repeat-containing protein ...   135   5e-30

>ref|XP_002521253.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223539521|gb|EEF41109.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 484

 Score =  154 bits (388), Expect = 9e-36
 Identities = 76/131 (58%), Positives = 95/131 (72%)
 Frame = +1

Query: 1   NDNIVPDTITLINLLPSCSKLGELKLGKSIHALAIRRGYCPHLVLETTLIDMYGSCQRVK 180
           +DN++PD IT+INLLPSCS+ G L  GK IH  AIR+ + PHLVLET L+DMYG C  ++
Sbjct: 4   DDNLIPDVITMINLLPSCSQSGALSNGKCIHGYAIRKMFLPHLVLETALVDMYGKCGELE 63

Query: 181 EANLMFIRMKDRNLISWNAMISAYVQNGHGRVAFELFHDLLNEPFVPDEMTITSILPAYA 360
            A  +F ++ ++NL+SWN MI+AYVQNG    A ELF+ L NEP  PD +TI SILPAYA
Sbjct: 64  LAKRVFSQIDEKNLVSWNTMIAAYVQNGLNMEALELFNCLWNEPPKPDAVTIASILPAYA 123

Query: 361 EFALPKEGKQI 393
           E A   E KQI
Sbjct: 124 ELASVSECKQI 134



 Score = 78.6 bits (192), Expect = 5e-13
 Identities = 39/128 (30%), Positives = 69/128 (53%)
 Frame = +1

Query: 1   NDNIVPDTITLINLLPSCSKLGELKLGKSIHALAIRRGYCPHLVLETTLIDMYGSCQRVK 180
           N+   PD +T+ ++LP+ ++L  +   K IH+  I+     H ++   ++ MY  C  +K
Sbjct: 105 NEPPKPDAVTIASILPAYAELASVSECKQIHSYIIKIELSSHTIISNAIVYMYAKCGDLK 164

Query: 181 EANLMFIRMKDRNLISWNAMISAYVQNGHGRVAFELFHDLLNEPFVPDEMTITSILPAYA 360
            A  +F  M  +N++SWN MI AY  +G G ++ +LF ++      P+E T  S+L + +
Sbjct: 165 TARRIFDGMLCKNVVSWNTMIMAYGIHGFGTMSIQLFSEMRENGIKPNESTFVSLLSSCS 224

Query: 361 EFALPKEG 384
              L  EG
Sbjct: 225 ITGLVDEG 232


>ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
           chloroplastic [Vitis vinifera]
           gi|297744563|emb|CBI37825.3| unnamed protein product
           [Vitis vinifera]
          Length = 802

 Score =  152 bits (385), Expect = 2e-35
 Identities = 73/126 (57%), Positives = 91/126 (72%)
 Frame = +1

Query: 16  PDTITLINLLPSCSKLGELKLGKSIHALAIRRGYCPHLVLETTLIDMYGSCQRVKEANLM 195
           PD IT+INLLP C++L  + LGKS+H  AIR G+ PHLVLET L+DMYG C ++K A  +
Sbjct: 327 PDWITMINLLPPCAQLEAILLGKSVHGFAIRNGFLPHLVLETALVDMYGECGKLKPAECL 386

Query: 196 FIRMKDRNLISWNAMISAYVQNGHGRVAFELFHDLLNEPFVPDEMTITSILPAYAEFALP 375
           F +M +RNLISWNAMI++Y +NG  R A  LF DL N+   PD  TI SILPAYAE A  
Sbjct: 387 FGQMNERNLISWNAMIASYTKNGENRKAMTLFQDLCNKTLKPDATTIASILPAYAELASL 446

Query: 376 KEGKQI 393
           +E +QI
Sbjct: 447 REAEQI 452



 Score = 79.3 bits (194), Expect = 3e-13
 Identities = 39/128 (30%), Positives = 70/128 (54%)
 Frame = +1

Query: 1   NDNIVPDTITLINLLPSCSKLGELKLGKSIHALAIRRGYCPHLVLETTLIDMYGSCQRVK 180
           N  + PD  T+ ++LP+ ++L  L+  + IH    +     +  +  +++ MYG C  + 
Sbjct: 423 NKTLKPDATTIASILPAYAELASLREAEQIHGYVTKLKLDSNTFVSNSIVFMYGKCGNLL 482

Query: 181 EANLMFIRMKDRNLISWNAMISAYVQNGHGRVAFELFHDLLNEPFVPDEMTITSILPAYA 360
            A  +F RM  +++ISWN +I AY  +G GR++ ELF ++  + F P+  T  S+L + +
Sbjct: 483 RAREIFDRMTFKDVISWNTVIMAYAIHGFGRISIELFSEMREKGFEPNGSTFVSLLLSCS 542

Query: 361 EFALPKEG 384
              L  EG
Sbjct: 543 VAGLVNEG 550



 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 38/126 (30%), Positives = 67/126 (53%), Gaps = 1/126 (0%)
 Frame = +1

Query: 19  DTITLINLLPSCSKLGELKLGKSIHALAIRRGYCPHLVLETTLIDMYGSCQRVKEANLMF 198
           D  ++I +L +CS  G L+ GK IH   +R      ++++T+L+DMY  C R+  A  +F
Sbjct: 226 DRFSVIGILGACSLEGFLRNGKEIHCQMMRSRLELDVMVQTSLVDMYAKCGRMDYAERLF 285

Query: 199 IRMKDRNLISWNAMISAYVQNGHGRVAFELFHDLL-NEPFVPDEMTITSILPAYAEFALP 375
            ++ D+++++WNAMI  Y  N     +F     +       PD +T+ ++LP  A+    
Sbjct: 286 DQITDKSIVAWNAMIGGYSLNAQSFESFAYVRKMQEGGKLHPDWITMINLLPPCAQLEAI 345

Query: 376 KEGKQI 393
             GK +
Sbjct: 346 LLGKSV 351



 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 36/125 (28%), Positives = 61/125 (48%)
 Frame = +1

Query: 19  DTITLINLLPSCSKLGELKLGKSIHALAIRRGYCPHLVLETTLIDMYGSCQRVKEANLMF 198
           D  T   ++ +C  L +L  G+ +H   I+ G    + +  +LI MY     ++ A ++F
Sbjct: 125 DNFTYPFVIKACGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIGCIESAEMVF 184

Query: 199 IRMKDRNLISWNAMISAYVQNGHGRVAFELFHDLLNEPFVPDEMTITSILPAYAEFALPK 378
             M  R+L+SWN+MIS YV  G G  +   F ++       D  ++  IL A +     +
Sbjct: 185 REMPVRDLVSWNSMISGYVSVGDGWRSLSCFREMQASGIKLDRFSVIGILGACSLEGFLR 244

Query: 379 EGKQI 393
            GK+I
Sbjct: 245 NGKEI 249


>ref|XP_002306200.1| predicted protein [Populus trichocarpa] gi|222849164|gb|EEE86711.1|
           predicted protein [Populus trichocarpa]
          Length = 784

 Score =  152 bits (383), Expect = 4e-35
 Identities = 71/131 (54%), Positives = 95/131 (72%)
 Frame = +1

Query: 1   NDNIVPDTITLINLLPSCSKLGELKLGKSIHALAIRRGYCPHLVLETTLIDMYGSCQRVK 180
           +D ++PD IT+INLLPSCS+ G L  GKSIH  AIR+ + P+LVLET L+DMYG C  +K
Sbjct: 304 DDKVIPDVITMINLLPSCSQSGALLEGKSIHGFAIRKMFLPYLVLETALVDMYGKCGELK 363

Query: 181 EANLMFIRMKDRNLISWNAMISAYVQNGHGRVAFELFHDLLNEPFVPDEMTITSILPAYA 360
            A  +F +M ++N++SWN M++AYVQN   + A ++F  +LNEP  PD +TI S+LPA A
Sbjct: 364 LAEHVFNQMNEKNMVSWNTMVAAYVQNEQYKEALKMFQHILNEPLKPDAITIASVLPAVA 423

Query: 361 EFALPKEGKQI 393
           E A   EGKQI
Sbjct: 424 ELASRSEGKQI 434



 Score = 78.6 bits (192), Expect = 5e-13
 Identities = 39/128 (30%), Positives = 69/128 (53%)
 Frame = +1

Query: 1   NDNIVPDTITLINLLPSCSKLGELKLGKSIHALAIRRGYCPHLVLETTLIDMYGSCQRVK 180
           N+ + PD IT+ ++LP+ ++L     GK IH+  ++ G   +  +   ++ MY  C  ++
Sbjct: 405 NEPLKPDAITIASVLPAVAELASRSEGKQIHSYIMKLGLGSNTFISNAIVYMYAKCGDLQ 464

Query: 181 EANLMFIRMKDRNLISWNAMISAYVQNGHGRVAFELFHDLLNEPFVPDEMTITSILPAYA 360
            A   F  M  ++++SWN MI AY  +G GR + + F ++  + F P+  T  S+L A +
Sbjct: 465 TAREFFDGMVCKDVVSWNTMIMAYAIHGFGRTSIQFFSEMRGKGFKPNGSTFVSLLTACS 524

Query: 361 EFALPKEG 384
              L  EG
Sbjct: 525 ISGLIDEG 532



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 38/125 (30%), Positives = 65/125 (52%)
 Frame = +1

Query: 19  DTITLINLLPSCSKLGELKLGKSIHALAIRRGYCPHLVLETTLIDMYGSCQRVKEANLMF 198
           D   +I+ L +CS    L+ G  IH   IR      ++++T+LIDMYG C +V  A  +F
Sbjct: 224 DRFGMISALGACSIEHCLRSGMEIHCQVIRSELELDIMVQTSLIDMYGKCGKVDYAERVF 283

Query: 199 IRMKDRNLISWNAMISAYVQNGHGRVAFELFHDLLNEPFVPDEMTITSILPAYAEFALPK 378
            R+  +N+++WNAMI    +               ++  +PD +T+ ++LP+ ++     
Sbjct: 284 NRIYSKNIVAWNAMIGGMQE---------------DDKVIPDVITMINLLPSCSQSGALL 328

Query: 379 EGKQI 393
           EGK I
Sbjct: 329 EGKSI 333



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 34/117 (29%), Positives = 58/117 (49%)
 Frame = +1

Query: 4   DNIVPDTITLINLLPSCSKLGELKLGKSIHALAIRRGYCPHLVLETTLIDMYGSCQRVKE 183
           + I  D  T   ++ +C +L  L +G+ +H   I+ G+   + +   LIDMY     ++ 
Sbjct: 118 EGIRSDNFTFPFVIKACGELLALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFIEL 177

Query: 184 ANLMFIRMKDRNLISWNAMISAYVQNGHGRVAFELFHDLLNEPFVPDEMTITSILPA 354
           A  +F  M  R+L+SWN+M+S Y  +G G  +   F ++L      D   + S L A
Sbjct: 178 AEKVFDEMPVRDLVSWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMISALGA 234


>ref|NP_195239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75098809|sp|O49619.1|PP350_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At4g35130, chloroplastic; Flags: Precursor
           gi|2924523|emb|CAA17777.1| putative protein [Arabidopsis
           thaliana] gi|7270464|emb|CAB80230.1| putative protein
           [Arabidopsis thaliana] gi|332661071|gb|AEE86471.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 804

 Score =  135 bits (341), Expect = 3e-30
 Identities = 68/130 (52%), Positives = 91/130 (70%)
 Frame = +1

Query: 4   DNIVPDTITLINLLPSCSKLGELKLGKSIHALAIRRGYCPHLVLETTLIDMYGSCQRVKE 183
           + + PD IT INLLP+ + L     G++IH  A+RRG+ PH+VLET LIDMYG C ++K 
Sbjct: 328 NGLQPDVITSINLLPASAILE----GRTIHGYAMRRGFLPHMVLETALIDMYGECGQLKS 383

Query: 184 ANLMFIRMKDRNLISWNAMISAYVQNGHGRVAFELFHDLLNEPFVPDEMTITSILPAYAE 363
           A ++F RM ++N+ISWN++I+AYVQNG    A ELF +L +   VPD  TI SILPAYAE
Sbjct: 384 AEVIFDRMAEKNVISWNSIIAAYVQNGKNYSALELFQELWDSSLVPDSTTIASILPAYAE 443

Query: 364 FALPKEGKQI 393
                EG++I
Sbjct: 444 SLSLSEGREI 453



 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 36/128 (28%), Positives = 75/128 (58%)
 Frame = +1

Query: 1   NDNIVPDTITLINLLPSCSKLGELKLGKSIHALAIRRGYCPHLVLETTLIDMYGSCQRVK 180
           + ++VPD+ T+ ++LP+ ++   L  G+ IHA  ++  Y  + ++  +L+ MY  C  ++
Sbjct: 424 DSSLVPDSTTIASILPAYAESLSLSEGREIHAYIVKSRYWSNTIILNSLVHMYAMCGDLE 483

Query: 181 EANLMFIRMKDRNLISWNAMISAYVQNGHGRVAFELFHDLLNEPFVPDEMTITSILPAYA 360
           +A   F  +  ++++SWN++I AY  +G GR++  LF +++     P++ T  S+L A +
Sbjct: 484 DARKCFNHILLKDVVSWNSIIMAYAVHGFGRISVWLFSEMIASRVNPNKSTFASLLAACS 543

Query: 361 EFALPKEG 384
              +  EG
Sbjct: 544 ISGMVDEG 551



 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 42/125 (33%), Positives = 68/125 (54%)
 Frame = +1

Query: 19  DTITLINLLPSCSKLGELKLGKSIHALAIRRGYCPHLVLETTLIDMYGSCQRVKEANLMF 198
           DT T   ++ S + +  L+ GK IHA+ I+ G+   + +  +LI +Y       +A  +F
Sbjct: 129 DTFTYPFVIKSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVF 188

Query: 199 IRMKDRNLISWNAMISAYVQNGHGRVAFELFHDLLNEPFVPDEMTITSILPAYAEFALPK 378
             M +R+++SWN+MIS Y+  G G  +  LF ++L   F PD  +  S L A +    PK
Sbjct: 189 EEMPERDIVSWNSMISGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPK 248

Query: 379 EGKQI 393
            GK+I
Sbjct: 249 MGKEI 253



 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 40/117 (34%), Positives = 63/117 (53%), Gaps = 2/117 (1%)
 Frame = +1

Query: 16  PDTITLINLLPSCSKLGELKLGKSIHALAIR-RGYCPHLVLETTLIDMYGSCQRVKEANL 192
           PD  + ++ L +CS +   K+GK IH  A+R R     +++ T+++DMY     V  A  
Sbjct: 229 PDRFSTMSALGACSHVYSPKMGKEIHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAER 288

Query: 193 MFIRMKDRNLISWNAMISAYVQNGHGRVAFELFHDLLNE-PFVPDEMTITSILPAYA 360
           +F  M  RN+++WN MI  Y +NG    AF  F  +  +    PD +T  ++LPA A
Sbjct: 289 IFNGMIQRNIVAWNVMIGCYARNGRVTDAFLCFQKMSEQNGLQPDVITSINLLPASA 345


>ref|XP_002867090.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297312926|gb|EFH43349.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 803

 Score =  135 bits (339), Expect = 5e-30
 Identities = 68/130 (52%), Positives = 91/130 (70%)
 Frame = +1

Query: 4   DNIVPDTITLINLLPSCSKLGELKLGKSIHALAIRRGYCPHLVLETTLIDMYGSCQRVKE 183
           + + PD ITLINLLP+C+ L     G++IH  A+RRG+ PH+VL+T LIDMYG   ++K 
Sbjct: 324 NGLQPDVITLINLLPACAILE----GRTIHGYAMRRGFLPHIVLDTALIDMYGEWGQLKS 379

Query: 184 ANLMFIRMKDRNLISWNAMISAYVQNGHGRVAFELFHDLLNEPFVPDEMTITSILPAYAE 363
           A ++F R+ ++NLISWN++I+AYVQNG    A ELF  L +   +PD  TI SILPAYAE
Sbjct: 380 AEVIFDRIAEKNLISWNSIIAAYVQNGKNYSALELFQKLWDSSLLPDSTTIASILPAYAE 439

Query: 364 FALPKEGKQI 393
                EG+QI
Sbjct: 440 SLSLSEGRQI 449



 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 35/128 (27%), Positives = 75/128 (58%)
 Frame = +1

Query: 1   NDNIVPDTITLINLLPSCSKLGELKLGKSIHALAIRRGYCPHLVLETTLIDMYGSCQRVK 180
           + +++PD+ T+ ++LP+ ++   L  G+ IHA  ++  Y  + ++  +L+ MY  C  ++
Sbjct: 420 DSSLLPDSTTIASILPAYAESLSLSEGRQIHAYIVKSRYGSNTIILNSLVHMYAMCGDLE 479

Query: 181 EANLMFIRMKDRNLISWNAMISAYVQNGHGRVAFELFHDLLNEPFVPDEMTITSILPAYA 360
           +A   F  +  ++++SWN++I AY  +G GR++  LF +++     P++ T  S+L A +
Sbjct: 480 DARKCFNHVLLKDVVSWNSIIMAYAVHGFGRISVCLFSEMIASKVDPNKSTFASLLAACS 539

Query: 361 EFALPKEG 384
              +  EG
Sbjct: 540 ISGMVDEG 547



 Score = 64.7 bits (156), Expect = 8e-09
 Identities = 37/125 (29%), Positives = 65/125 (52%)
 Frame = +1

Query: 19  DTITLINLLPSCSKLGELKLGKSIHALAIRRGYCPHLVLETTLIDMYGSCQRVKEANLMF 198
           D+ T   ++ S + +  L+ GK IHA+ I+  +   + +  +LI +Y       +A  +F
Sbjct: 125 DSFTYPFVIKSVTGISSLEEGKKIHAMVIKLRFVSDVYVCNSLISLYMKLGCSWDAEKVF 184

Query: 199 IRMKDRNLISWNAMISAYVQNGHGRVAFELFHDLLNEPFVPDEMTITSILPAYAEFALPK 378
             M +R+++SWN+MIS Y+    G  +  LF ++L   F PD  +  S L A +    P 
Sbjct: 185 EEMPERDIVSWNSMISGYLALEDGFRSLMLFKEMLKFGFKPDRFSTMSALGACSHVYSPN 244

Query: 379 EGKQI 393
            GK++
Sbjct: 245 MGKEL 249



 Score = 61.6 bits (148), Expect = 6e-08
 Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 2/117 (1%)
 Frame = +1

Query: 16  PDTITLINLLPSCSKLGELKLGKSIHALAIR-RGYCPHLVLETTLIDMYGSCQRVKEANL 192
           PD  + ++ L +CS +    +GK +H  A+R R     +++ T+++DMY     V  A  
Sbjct: 225 PDRFSTMSALGACSHVYSPNMGKELHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAER 284

Query: 193 MFIRMKDRNLISWNAMISAYVQNGHGRVAFELFHDLLNE-PFVPDEMTITSILPAYA 360
           +F  +  RN+++WN +I  Y +N     AF  F  +  +    PD +T+ ++LPA A
Sbjct: 285 IFKCIIQRNIVAWNVLIGCYARNSRVTDAFLCFQKMSEQNGLQPDVITLINLLPACA 341