BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00043879
         (239 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAB10743.1| retroelement pol polyprotein-like [Arabidopsis t...    77   2e-12
emb|CAA18107.1| LTR retrotransposon like protein [Arabidopsis th...    77   2e-12
gb|AAG50751.1|AC079733_19 polyprotein, putative [Arabidopsis tha...    76   2e-12
dbj|BAA97287.1| retroelement pol polyprotein-like [Arabidopsis t...    74   1e-11
gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsi...    72   4e-11

>dbj|BAB10743.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 1109

 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 39/79 (49%), Positives = 54/79 (68%)
 Frame = +1

Query: 1    LSQQKYVKDIIKDLNME*AKSVTTLLVQDWNTDDRTSPLLEDPLQYKRLVGRILYLNFTR 180
            LSQ+KYV DII ++ +  A+     L Q+      TSPLL D  +Y+RLVGR++YL  TR
Sbjct: 842  LSQRKYVLDIISEMGLLGARPSAFPLEQNHKLSLSTSPLLSDSSRYRRLVGRLIYLAVTR 901

Query: 181  PDLIFSIHHLSQFMQHPTQ 237
            P+L +S+H L+QFMQ+P Q
Sbjct: 902  PELSYSVHTLAQFMQNPRQ 920


>emb|CAA18107.1| LTR retrotransposon like protein [Arabidopsis thaliana]
            gi|7269049|emb|CAB79159.1| LTR retrotransposon like
            protein [Arabidopsis thaliana]
          Length = 1109

 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 39/79 (49%), Positives = 54/79 (68%)
 Frame = +1

Query: 1    LSQQKYVKDIIKDLNME*AKSVTTLLVQDWNTDDRTSPLLEDPLQYKRLVGRILYLNFTR 180
            LSQ+KYV DII ++ +  A+     L Q+      TSPLL D  +Y+RLVGR++YL  TR
Sbjct: 842  LSQRKYVLDIISEMGLLGARPSAFPLEQNHKLSLSTSPLLSDSSRYRRLVGRLIYLAVTR 901

Query: 181  PDLIFSIHHLSQFMQHPTQ 237
            P+L +S+H L+QFMQ+P Q
Sbjct: 902  PELSYSVHTLAQFMQNPRQ 920


>gb|AAG50751.1|AC079733_19 polyprotein, putative [Arabidopsis thaliana]
          Length = 1468

 Score = 76.3 bits (186), Expect = 2e-12
 Identities = 39/79 (49%), Positives = 54/79 (68%)
 Frame = +1

Query: 1    LSQQKYVKDIIKDLNME*AKSVTTLLVQDWNTDDRTSPLLEDPLQYKRLVGRILYLNFTR 180
            LSQ+KYV DII ++ +  A+     L Q+      TSPLL D  +Y+RLVGR++YL  TR
Sbjct: 1201 LSQRKYVLDIISEMGLLGARPSAFPLEQNHKLSLSTSPLLSDSSRYRRLVGRLIYLVVTR 1260

Query: 181  PDLIFSIHHLSQFMQHPTQ 237
            P+L +S+H L+QFMQ+P Q
Sbjct: 1261 PELSYSVHTLAQFMQNPRQ 1279


>dbj|BAA97287.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 1491

 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 39/79 (49%), Positives = 51/79 (64%)
 Frame = +1

Query: 1    LSQQKYVKDIIKDLNME*AKSVTTLLVQDWNTDDRTSPLLEDPLQYKRLVGRILYLNFTR 180
            LSQ+KY  DII D     A+   T L Q+ +      PLL+DP  ++RLVGR+LYL  TR
Sbjct: 1224 LSQRKYALDIISDSGTLGARPAYTPLEQNHHLASDDGPLLQDPKPFRRLVGRLLYLLHTR 1283

Query: 181  PDLIFSIHHLSQFMQHPTQ 237
            P+L +S+H LSQFMQ P +
Sbjct: 1284 PELSYSVHVLSQFMQAPRE 1302


>gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1501

 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 37/79 (46%), Positives = 51/79 (64%)
 Frame = +1

Query: 1    LSQQKYVKDIIKDLNME*AKSVTTLLVQDWNTDDRTSPLLEDPLQYKRLVGRILYLNFTR 180
            LSQ+KY  D+I D     ++   T L Q+ +      PLL DP  Y+RLVGR+LYL  TR
Sbjct: 1234 LSQRKYALDVIADSGNLGSRPAHTPLEQNHHLASDDGPLLSDPKPYRRLVGRLLYLLHTR 1293

Query: 181  PDLIFSIHHLSQFMQHPTQ 237
            P+L +S+H L+QFMQ+P +
Sbjct: 1294 PELSYSVHVLAQFMQNPRE 1312