BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00043440
         (445 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002512275.1| pentatricopeptide repeat-containing protein,...   207   7e-52
ref|XP_002278014.2| PREDICTED: pentatricopeptide repeat-containi...   203   1e-50
dbj|BAH19478.1| AT2G06000 [Arabidopsis thaliana]                      203   1e-50
ref|NP_178657.1| pentatricopeptide repeat-containing protein [Ar...   203   1e-50
ref|XP_002885810.1| pentatricopeptide repeat-containing protein ...   200   9e-50

>ref|XP_002512275.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223548236|gb|EEF49727.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 532

 Score =  207 bits (527), Expect = 7e-52
 Identities = 96/147 (65%), Positives = 119/147 (80%)
 Frame = +1

Query: 1   GNCRVGELGKGMKLLDDMDEKKLSPNLYTFSVLINALCRVNRLDEARQLLSKLQMREDII 180
           G CR G++  G+K+ D M  + +SPN+YT+SV+INALC+ NR+ EAR LL +L+   D+ 
Sbjct: 348 GYCRTGDIRLGLKVWDVMKARNVSPNIYTYSVIINALCKDNRIHEARDLLRQLKC-SDVF 406

Query: 181 PRPFIYNPVIDGFCKAGNVDEANIIVGEMEANRCPPDKLTYTILILGHCMKGRMSEAISI 360
           P+PFIYNPVIDGFCKAGNVDEAN+IV EME  RC PDK+T+TILI+GHCMKGRM EA+ I
Sbjct: 407 PKPFIYNPVIDGFCKAGNVDEANVIVTEMEEKRCRPDKVTFTILIIGHCMKGRMVEALDI 466

Query: 361 FNKMLPVGCAPDKITVSCIVCCLLKAG 441
           F KML +GCAPD IT+S +V CLLKAG
Sbjct: 467 FKKMLAIGCAPDNITISSLVACLLKAG 493



 Score = 95.1 bits (235), Expect = 5e-18
 Identities = 49/140 (35%), Positives = 76/140 (54%)
 Frame = +1

Query: 1   GNCRVGELGKGMKLLDDMDEKKLSPNLYTFSVLINALCRVNRLDEARQLLSKLQMREDII 180
           G CRVGE+ KG +L + M      P++ T++ LI+ LC+ N LD A  LL ++Q R D  
Sbjct: 207 GLCRVGEVEKGFELFNAMQSFGCLPDVVTYNTLISGLCKANELDRACDLLKEVQSRNDCS 266

Query: 181 PRPFIYNPVIDGFCKAGNVDEANIIVGEMEANRCPPDKLTYTILILGHCMKGRMSEAISI 360
           P    Y  +I GF K G ++ A+++  EM  +   P  +T+ +LI G    G M  A ++
Sbjct: 267 PDVMTYTSIISGFRKLGKLEAASVLFEEMIRSGIEPTVVTFNVLIDGFGKIGNMVAAEAM 326

Query: 361 FNKMLPVGCAPDKITVSCIV 420
             KM    C PD +T + ++
Sbjct: 327 HEKMASYSCIPDVVTFTSLI 346



 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 37/114 (32%), Positives = 60/114 (52%)
 Frame = +1

Query: 97  LINALCRVNRLDEARQLLSKLQMREDIIPRPFIYNPVIDGFCKAGNVDEANIIVGEMEAN 276
           L+ +  +  + D A++L+ ++Q  E  I   F+YN +++   K G V EA  +  E  A 
Sbjct: 134 LVTSFAQAGKFDLAKKLIIEVQGEEARISS-FVYNYLLNELVKGGKVHEAIFLFKENLAF 192

Query: 277 RCPPDKLTYTILILGHCMKGRMSEAISIFNKMLPVGCAPDKITVSCIVCCLLKA 438
             PP+  T+ ILI G C  G + +   +FN M   GC PD +T + ++  L KA
Sbjct: 193 HSPPNTWTFNILIRGLCRVGEVEKGFELFNAMQSFGCLPDVVTYNTLISGLCKA 246



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 35/145 (24%), Positives = 69/145 (47%), Gaps = 1/145 (0%)
 Frame = +1

Query: 10  RVGELGKGMKLLDDMDEKKLSPNLYTFSVLINALCRVNRLDEARQLLSKLQMREDIIPRP 189
           + G+     KL+ ++  ++   + + ++ L+N L +  ++ EA   L K  +     P  
Sbjct: 140 QAGKFDLAKKLIIEVQGEEARISSFVYNYLLNELVKGGKVHEAI-FLFKENLAFHSPPNT 198

Query: 190 FIYNPVIDGFCKAGNVDEANIIVGEMEANRCPPDKLTYTILILGHCMKGRMSEAISIFNK 369
           + +N +I G C+ G V++   +   M++  C PD +TY  LI G C    +  A  +  +
Sbjct: 199 WTFNILIRGLCRVGEVEKGFELFNAMQSFGCLPDVVTYNTLISGLCKANELDRACDLLKE 258

Query: 370 MLPVG-CAPDKITVSCIVCCLLKAG 441
           +     C+PD +T + I+    K G
Sbjct: 259 VQSRNDCSPDVMTYTSIISGFRKLG 283



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 33/144 (22%), Positives = 66/144 (45%)
 Frame = +1

Query: 10  RVGELGKGMKLLDDMDEKKLSPNLYTFSVLINALCRVNRLDEARQLLSKLQMREDIIPRP 189
           ++G+L     L ++M    + P + TF+VLI+   ++  +  A  +  K+      IP  
Sbjct: 281 KLGKLEAASVLFEEMIRSGIEPTVVTFNVLIDGFGKIGNMVAAEAMHEKMASYS-CIPDV 339

Query: 190 FIYNPVIDGFCKAGNVDEANIIVGEMEANRCPPDKLTYTILILGHCMKGRMSEAISIFNK 369
             +  +IDG+C+ G++     +   M+A    P+  TY+++I   C   R+ EA  +  +
Sbjct: 340 VTFTSLIDGYCRTGDIRLGLKVWDVMKARNVSPNIYTYSVIINALCKDNRIHEARDLLRQ 399

Query: 370 MLPVGCAPDKITVSCIVCCLLKAG 441
           +      P     + ++    KAG
Sbjct: 400 LKCSDVFPKPFIYNPVIDGFCKAG 423


>ref|XP_002278014.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Vitis vinifera]
          Length = 641

 Score =  203 bits (517), Expect = 1e-50
 Identities = 94/148 (63%), Positives = 120/148 (81%)
 Frame = +1

Query: 1   GNCRVGELGKGMKLLDDMDEKKLSPNLYTFSVLINALCRVNRLDEARQLLSKLQMREDII 180
           G+CR G++ + +KL  +++ + LSPN YTF++L NALC+ NRL EAR  L  L+ R  I+
Sbjct: 387 GHCRTGKVERSLKLWHELNARNLSPNEYTFAILTNALCKENRLHEARGFLRDLKWRH-IV 445

Query: 181 PRPFIYNPVIDGFCKAGNVDEANIIVGEMEANRCPPDKLTYTILILGHCMKGRMSEAISI 360
            +PF+YNPVIDGFCKAGNVDEAN+I+ EME  RC PDK+TYTILI+GHCMKGR+SEAISI
Sbjct: 446 AQPFMYNPVIDGFCKAGNVDEANVILAEMEEKRCKPDKITYTILIIGHCMKGRLSEAISI 505

Query: 361 FNKMLPVGCAPDKITVSCIVCCLLKAGM 444
           FN+ML  GCAPD IT++ ++ CLLKAGM
Sbjct: 506 FNRMLGTGCAPDSITMTSLISCLLKAGM 533



 Score =  103 bits (256), Expect = 2e-20
 Identities = 49/140 (35%), Positives = 82/140 (58%)
 Frame = +1

Query: 1   GNCRVGELGKGMKLLDDMDEKKLSPNLYTFSVLINALCRVNRLDEARQLLSKLQMREDII 180
           G CR+G++ K  +L ++M     SP++ T++ LIN  CRVN +D    LL +L  + D+ 
Sbjct: 246 GLCRIGKVDKAFELFNEMRGFGCSPDVITYNTLINGFCRVNEVDRGHDLLKELLSKNDLS 305

Query: 181 PRPFIYNPVIDGFCKAGNVDEANIIVGEMEANRCPPDKLTYTILILGHCMKGRMSEAISI 360
           P    Y  +I G+CK G +++A+I+   M ++   P+  T+ ILI G    G M  A ++
Sbjct: 306 PDVVTYTSIISGYCKLGKMEKASILFNNMISSGIKPNAFTFNILINGFGKVGDMVSAENM 365

Query: 361 FNKMLPVGCAPDKITVSCIV 420
           + +ML +GC PD IT + ++
Sbjct: 366 YEEMLLLGCPPDIITFTSLI 385



 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 39/120 (32%), Positives = 69/120 (57%), Gaps = 1/120 (0%)
 Frame = +1

Query: 85  TFSVLINALCRVNRLDEARQLLSKLQMREDIIPRPFIYNPVIDGFCKAGNVDEANIIVGE 264
           +F++LI  LCR+ ++D+A +L ++++      P    YN +I+GFC+   VD  + ++ E
Sbjct: 239 SFNILIRGLCRIGKVDKAFELFNEMR-GFGCSPDVITYNTLINGFCRVNEVDRGHDLLKE 297

Query: 265 M-EANRCPPDKLTYTILILGHCMKGRMSEAISIFNKMLPVGCAPDKITVSCIVCCLLKAG 441
           +   N   PD +TYT +I G+C  G+M +A  +FN M+  G  P+  T + ++    K G
Sbjct: 298 LLSKNDLSPDVVTYTSIISGYCKLGKMEKASILFNNMISSGIKPNAFTFNILINGFGKVG 357



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 39/127 (30%), Positives = 61/127 (48%), Gaps = 5/127 (3%)
 Frame = +1

Query: 76  NLYTFSVLINALCRVNRLDEARQLLSKLQMREDI-IPRPF---IYNPVIDGFCKAGNVDE 243
           +L  ++ L+N L R N++DEA         RE + +  PF    +N +I G C+ G VD+
Sbjct: 201 SLVVYNKLLNQLVRGNQVDEAVCFF-----REQMGLHGPFDSCSFNILIRGLCRIGKVDK 255

Query: 244 ANIIVGEMEANRCPPDKLTYTILILGHCMKGRMSEAISIFNKMLPVG-CAPDKITVSCIV 420
           A  +  EM    C PD +TY  LI G C    +     +  ++L     +PD +T + I+
Sbjct: 256 AFELFNEMRGFGCSPDVITYNTLINGFCRVNEVDRGHDLLKELLSKNDLSPDVVTYTSII 315

Query: 421 CCLLKAG 441
               K G
Sbjct: 316 SGYCKLG 322


>dbj|BAH19478.1| AT2G06000 [Arabidopsis thaliana]
          Length = 536

 Score =  203 bits (516), Expect = 1e-50
 Identities = 93/148 (62%), Positives = 124/148 (83%)
 Frame = +1

Query: 1   GNCRVGELGKGMKLLDDMDEKKLSPNLYTFSVLINALCRVNRLDEARQLLSKLQMREDII 180
           G CRVG++ +G +L ++M+ + + PN +T+S+LINALC  NRL +AR+LL +L  + DII
Sbjct: 356 GYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASK-DII 414

Query: 181 PRPFIYNPVIDGFCKAGNVDEANIIVGEMEANRCPPDKLTYTILILGHCMKGRMSEAISI 360
           P+PF+YNPVIDGFCKAG V+EAN+IV EME  +C PDK+T+TILI+GHCMKGRM EA+SI
Sbjct: 415 PQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSI 474

Query: 361 FNKMLPVGCAPDKITVSCIVCCLLKAGM 444
           F+KM+ +GC+PDKITVS ++ CLLKAGM
Sbjct: 475 FHKMVAIGCSPDKITVSSLLSCLLKAGM 502



 Score = 83.2 bits (204), Expect = 2e-14
 Identities = 42/140 (30%), Positives = 73/140 (52%)
 Frame = +1

Query: 1   GNCRVGELGKGMKLLDDMDEKKLSPNLYTFSVLINALCRVNRLDEARQLLSKLQMREDII 180
           G C VG+  K ++LL  M      P++ T++ LI   C+ N L++A ++   ++      
Sbjct: 215 GLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCS 274

Query: 181 PRPFIYNPVIDGFCKAGNVDEANIIVGEMEANRCPPDKLTYTILILGHCMKGRMSEAISI 360
           P    Y  +I G+CKAG + EA+ ++ +M      P  +T+ +L+ G+   G M  A  I
Sbjct: 275 PDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEI 334

Query: 361 FNKMLPVGCAPDKITVSCIV 420
             KM+  GC PD +T + ++
Sbjct: 335 RGKMISFGCFPDVVTFTSLI 354



 Score = 81.3 bits (199), Expect = 8e-14
 Identities = 45/144 (31%), Positives = 80/144 (55%), Gaps = 1/144 (0%)
 Frame = +1

Query: 1   GNCRVGELGKGMKLLDDMDEKKL-SPNLYTFSVLINALCRVNRLDEARQLLSKLQMREDI 177
           G C+  EL K  ++  D+    + SP++ T++ +I+  C+  ++ EA  LL  + +R  I
Sbjct: 250 GFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDM-LRLGI 308

Query: 178 IPRPFIYNPVIDGFCKAGNVDEANIIVGEMEANRCPPDKLTYTILILGHCMKGRMSEAIS 357
            P    +N ++DG+ KAG +  A  I G+M +  C PD +T+T LI G+C  G++S+   
Sbjct: 309 YPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFR 368

Query: 358 IFNKMLPVGCAPDKITVSCIVCCL 429
           ++ +M   G  P+  T S ++  L
Sbjct: 369 LWEEMNARGMFPNAFTYSILINAL 392



 Score = 80.5 bits (197), Expect = 1e-13
 Identities = 47/140 (33%), Positives = 79/140 (56%), Gaps = 4/140 (2%)
 Frame = +1

Query: 34  MKLLDDMDEKKLSPNLYTFSVLINALCRVNRLDEARQLLSKLQ---MREDIIPRPFIYNP 204
           MKL D+    +   +  TF++LI  LC V + ++A +LL  +       DI+     YN 
Sbjct: 191 MKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVT----YNT 246

Query: 205 VIDGFCKAGNVDEANIIVGEMEANR-CPPDKLTYTILILGHCMKGRMSEAISIFNKMLPV 381
           +I GFCK+  +++A+ +  ++++   C PD +TYT +I G+C  G+M EA S+ + ML +
Sbjct: 247 LIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRL 306

Query: 382 GCAPDKITVSCIVCCLLKAG 441
           G  P  +T + +V    KAG
Sbjct: 307 GIYPTNVTFNVLVDGYAKAG 326



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 38/147 (25%), Positives = 69/147 (46%)
 Frame = +1

Query: 1   GNCRVGELGKGMKLLDDMDEKKLSPNLYTFSVLINALCRVNRLDEARQLLSKLQMREDII 180
           G C+ G++ +   LLDDM    + P   TF+VL++   +   +  A ++  K+ +     
Sbjct: 286 GYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKM-ISFGCF 344

Query: 181 PRPFIYNPVIDGFCKAGNVDEANIIVGEMEANRCPPDKLTYTILILGHCMKGRMSEAISI 360
           P    +  +IDG+C+ G V +   +  EM A    P+  TY+ILI   C + R+ +A  +
Sbjct: 345 PDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKAREL 404

Query: 361 FNKMLPVGCAPDKITVSCIVCCLLKAG 441
             ++      P     + ++    KAG
Sbjct: 405 LGQLASKDIIPQPFMYNPVIDGFCKAG 431


>ref|NP_178657.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|42570711|ref|NP_973429.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
           gi|75216767|sp|Q9ZUE9.1|PP149_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g06000 gi|4006835|gb|AAC95177.1| hypothetical protein
           [Arabidopsis thaliana] gi|110736272|dbj|BAF00106.1|
           hypothetical protein [Arabidopsis thaliana]
           gi|330250896|gb|AEC05990.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
           gi|330250897|gb|AEC05991.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 536

 Score =  203 bits (516), Expect = 1e-50
 Identities = 93/148 (62%), Positives = 124/148 (83%)
 Frame = +1

Query: 1   GNCRVGELGKGMKLLDDMDEKKLSPNLYTFSVLINALCRVNRLDEARQLLSKLQMREDII 180
           G CRVG++ +G +L ++M+ + + PN +T+S+LINALC  NRL +AR+LL +L  + DII
Sbjct: 356 GYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASK-DII 414

Query: 181 PRPFIYNPVIDGFCKAGNVDEANIIVGEMEANRCPPDKLTYTILILGHCMKGRMSEAISI 360
           P+PF+YNPVIDGFCKAG V+EAN+IV EME  +C PDK+T+TILI+GHCMKGRM EA+SI
Sbjct: 415 PQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSI 474

Query: 361 FNKMLPVGCAPDKITVSCIVCCLLKAGM 444
           F+KM+ +GC+PDKITVS ++ CLLKAGM
Sbjct: 475 FHKMVAIGCSPDKITVSSLLSCLLKAGM 502



 Score = 83.2 bits (204), Expect = 2e-14
 Identities = 42/140 (30%), Positives = 73/140 (52%)
 Frame = +1

Query: 1   GNCRVGELGKGMKLLDDMDEKKLSPNLYTFSVLINALCRVNRLDEARQLLSKLQMREDII 180
           G C VG+  K ++LL  M      P++ T++ LI   C+ N L++A ++   ++      
Sbjct: 215 GLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCS 274

Query: 181 PRPFIYNPVIDGFCKAGNVDEANIIVGEMEANRCPPDKLTYTILILGHCMKGRMSEAISI 360
           P    Y  +I G+CKAG + EA+ ++ +M      P  +T+ +L+ G+   G M  A  I
Sbjct: 275 PDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEI 334

Query: 361 FNKMLPVGCAPDKITVSCIV 420
             KM+  GC PD +T + ++
Sbjct: 335 RGKMISFGCFPDVVTFTSLI 354



 Score = 81.3 bits (199), Expect = 8e-14
 Identities = 45/144 (31%), Positives = 80/144 (55%), Gaps = 1/144 (0%)
 Frame = +1

Query: 1   GNCRVGELGKGMKLLDDMDEKKL-SPNLYTFSVLINALCRVNRLDEARQLLSKLQMREDI 177
           G C+  EL K  ++  D+    + SP++ T++ +I+  C+  ++ EA  LL  + +R  I
Sbjct: 250 GFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDM-LRLGI 308

Query: 178 IPRPFIYNPVIDGFCKAGNVDEANIIVGEMEANRCPPDKLTYTILILGHCMKGRMSEAIS 357
            P    +N ++DG+ KAG +  A  I G+M +  C PD +T+T LI G+C  G++S+   
Sbjct: 309 YPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFR 368

Query: 358 IFNKMLPVGCAPDKITVSCIVCCL 429
           ++ +M   G  P+  T S ++  L
Sbjct: 369 LWEEMNARGMFPNAFTYSILINAL 392



 Score = 80.5 bits (197), Expect = 1e-13
 Identities = 47/140 (33%), Positives = 79/140 (56%), Gaps = 4/140 (2%)
 Frame = +1

Query: 34  MKLLDDMDEKKLSPNLYTFSVLINALCRVNRLDEARQLLSKLQ---MREDIIPRPFIYNP 204
           MKL D+    +   +  TF++LI  LC V + ++A +LL  +       DI+     YN 
Sbjct: 191 MKLFDEHLRFQSCNDTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVT----YNT 246

Query: 205 VIDGFCKAGNVDEANIIVGEMEANR-CPPDKLTYTILILGHCMKGRMSEAISIFNKMLPV 381
           +I GFCK+  +++A+ +  ++++   C PD +TYT +I G+C  G+M EA S+ + ML +
Sbjct: 247 LIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRL 306

Query: 382 GCAPDKITVSCIVCCLLKAG 441
           G  P  +T + +V    KAG
Sbjct: 307 GIYPTNVTFNVLVDGYAKAG 326



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 38/147 (25%), Positives = 69/147 (46%)
 Frame = +1

Query: 1   GNCRVGELGKGMKLLDDMDEKKLSPNLYTFSVLINALCRVNRLDEARQLLSKLQMREDII 180
           G C+ G++ +   LLDDM    + P   TF+VL++   +   +  A ++  K+ +     
Sbjct: 286 GYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKM-ISFGCF 344

Query: 181 PRPFIYNPVIDGFCKAGNVDEANIIVGEMEANRCPPDKLTYTILILGHCMKGRMSEAISI 360
           P    +  +IDG+C+ G V +   +  EM A    P+  TY+ILI   C + R+ +A  +
Sbjct: 345 PDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKAREL 404

Query: 361 FNKMLPVGCAPDKITVSCIVCCLLKAG 441
             ++      P     + ++    KAG
Sbjct: 405 LGQLASKDIIPQPFMYNPVIDGFCKAG 431


>ref|XP_002885810.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297331650|gb|EFH62069.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 536

 Score =  200 bits (509), Expect = 9e-50
 Identities = 92/148 (62%), Positives = 124/148 (83%)
 Frame = +1

Query: 1   GNCRVGELGKGMKLLDDMDEKKLSPNLYTFSVLINALCRVNRLDEARQLLSKLQMREDII 180
           G CRVG++ +G +L ++M+ + + PN +T+S+LINALC+ NRL +AR+LL +L  + DII
Sbjct: 356 GYCRVGQVNQGFRLWEEMNARGMFPNAFTYSILINALCKENRLLKARELLGQLASK-DII 414

Query: 181 PRPFIYNPVIDGFCKAGNVDEANIIVGEMEANRCPPDKLTYTILILGHCMKGRMSEAISI 360
           P+PF+YNPVIDGFCKAG V+EA +IV EME  +C PDK+T+TILI+GHCMKGRM EA+SI
Sbjct: 415 PQPFMYNPVIDGFCKAGKVNEAIVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSI 474

Query: 361 FNKMLPVGCAPDKITVSCIVCCLLKAGM 444
           F+KM+ +GC+PDKITVS ++ CLLKAGM
Sbjct: 475 FHKMVAIGCSPDKITVSSLLSCLLKAGM 502



 Score = 86.7 bits (213), Expect = 2e-15
 Identities = 42/140 (30%), Positives = 73/140 (52%)
 Frame = +1

Query: 1   GNCRVGELGKGMKLLDDMDEKKLSPNLYTFSVLINALCRVNRLDEARQLLSKLQMREDII 180
           G C VG+  K ++LL  M      P++ T++ LI   C+ N L +A ++   ++      
Sbjct: 215 GLCGVGKAEKAVELLGGMSGFGCLPDIVTYNTLIKGFCKSNELKKANEMFDDVKSSSGCS 274

Query: 181 PRPFIYNPVIDGFCKAGNVDEANIIVGEMEANRCPPDKLTYTILILGHCMKGRMSEAISI 360
           P    Y  +I G+CKAG + EA++++ +M      P  +T+ +L+ G+   G M  A  I
Sbjct: 275 PDVVTYTSMISGYCKAGKMQEASVLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMHTAEEI 334

Query: 361 FNKMLPVGCAPDKITVSCIV 420
             KM+  GC PD +T + ++
Sbjct: 335 RGKMISFGCFPDVVTFTSLI 354



 Score = 84.3 bits (207), Expect = 9e-15
 Identities = 46/146 (31%), Positives = 81/146 (55%), Gaps = 1/146 (0%)
 Frame = +1

Query: 1   GNCRVGELGKGMKLLDDMDEKK-LSPNLYTFSVLINALCRVNRLDEARQLLSKLQMREDI 177
           G C+  EL K  ++ DD+      SP++ T++ +I+  C+  ++ EA  LL  + +R  I
Sbjct: 250 GFCKSNELKKANEMFDDVKSSSGCSPDVVTYTSMISGYCKAGKMQEASVLLDDM-LRLGI 308

Query: 178 IPRPFIYNPVIDGFCKAGNVDEANIIVGEMEANRCPPDKLTYTILILGHCMKGRMSEAIS 357
            P    +N ++DG+ KAG +  A  I G+M +  C PD +T+T LI G+C  G++++   
Sbjct: 309 YPTNVTFNVLVDGYAKAGEMHTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVNQGFR 368

Query: 358 IFNKMLPVGCAPDKITVSCIVCCLLK 435
           ++ +M   G  P+  T S ++  L K
Sbjct: 369 LWEEMNARGMFPNAFTYSILINALCK 394



 Score = 79.0 bits (193), Expect = 4e-13
 Identities = 45/137 (32%), Positives = 77/137 (56%), Gaps = 1/137 (0%)
 Frame = +1

Query: 34  MKLLDDMDEKKLSPNLYTFSVLINALCRVNRLDEARQLLSKLQMREDIIPRPFIYNPVID 213
           MKL ++    +   +  TF++LI  LC V + ++A +LL  +      +P    YN +I 
Sbjct: 191 MKLFEEHLRFQSCNDTKTFNILIRGLCGVGKAEKAVELLGGMS-GFGCLPDIVTYNTLIK 249

Query: 214 GFCKAGNVDEANIIVGEMEANR-CPPDKLTYTILILGHCMKGRMSEAISIFNKMLPVGCA 390
           GFCK+  + +AN +  +++++  C PD +TYT +I G+C  G+M EA  + + ML +G  
Sbjct: 250 GFCKSNELKKANEMFDDVKSSSGCSPDVVTYTSMISGYCKAGKMQEASVLLDDMLRLGIY 309

Query: 391 PDKITVSCIVCCLLKAG 441
           P  +T + +V    KAG
Sbjct: 310 PTNVTFNVLVDGYAKAG 326



 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 45/175 (25%), Positives = 75/175 (42%), Gaps = 35/175 (20%)
 Frame = +1

Query: 1   GNCRVGELGKGMKLLDDMDEKKLSPNLYTFSVLINALCRVNRLDEARQLLSKLQMREDII 180
           G C+ G++ +   LLDDM    + P   TF+VL++   +   +  A ++  K+ +     
Sbjct: 286 GYCKAGKMQEASVLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMHTAEEIRGKM-ISFGCF 344

Query: 181 PRPFIYNPVIDGFCKAGNVDEANIIVGEMEANRCPPDKLTYTILIL-------------- 318
           P    +  +IDG+C+ G V++   +  EM A    P+  TY+ILI               
Sbjct: 345 PDVVTFTSLIDGYCRVGQVNQGFRLWEEMNARGMFPNAFTYSILINALCKENRLLKAREL 404

Query: 319 ---------------------GHCMKGRMSEAISIFNKMLPVGCAPDKITVSCIV 420
                                G C  G+++EAI I  +M    C PDKIT + ++
Sbjct: 405 LGQLASKDIIPQPFMYNPVIDGFCKAGKVNEAIVIVEEMEKKKCKPDKITFTILI 459