BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00043411
         (475 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_006666020.1| RNA polymerase beta'' subunit (chloroplast) ...   314   4e-84
sp|Q8S8Y1.1|RPOC2_ATRBE RecName: Full=DNA-directed RNA polymeras...   313   7e-84
ref|NP_783222.2| RNA polymerase beta'' subunit [Atropa belladonna]    313   7e-84
ref|YP_358662.2| RNA polymerase beta'' subunit [Nicotiana sylves...   313   1e-83
ref|YP_004891590.1| rpoC2 gene product (chloroplast) [Nicotiana ...   313   1e-83

>ref|YP_006666020.1| RNA polymerase beta'' subunit (chloroplast) [Capsicum annuum]
           gi|401065922|gb|AFP90766.1| RNA polymerase beta''
           subunit (chloroplast) [Capsicum annuum]
          Length = 1392

 Score =  314 bits (805), Expect = 4e-84
 Identities = 150/158 (94%), Positives = 153/158 (96%)
 Frame = +2

Query: 2   NPRNGMMPERIFTQTLIGRVLSDDIYMDFRCIATRNQDIGIGLVNRFITFRAQPISIRTP 181
           +PRNGMMPERIF+QTLIGRVL+DDIYM  RCIATRNQDIGIGLVNRFITFRAQPISIRTP
Sbjct: 233 SPRNGMMPERIFSQTLIGRVLADDIYMGSRCIATRNQDIGIGLVNRFITFRAQPISIRTP 292

Query: 182 FTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGI 361
           FTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGG 
Sbjct: 293 FTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGT 352

Query: 362 AEHARAPSNGKIKFNEGLVHPTRTRHGHPAFLCSIDLY 475
           AEH RAPSNGKIKFNE LVHPTRTRHGHPAFLCSIDLY
Sbjct: 353 AEHVRAPSNGKIKFNEDLVHPTRTRHGHPAFLCSIDLY 390


>sp|Q8S8Y1.1|RPOC2_ATRBE RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
           Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
           subunit beta''; Short=RNA polymerase subunit beta''
           gi|20068321|emb|CAC88034.1| RNA polymerase beta II
           subunit [Atropa belladonna]
          Length = 1389

 Score =  313 bits (803), Expect = 7e-84
 Identities = 150/158 (94%), Positives = 153/158 (96%)
 Frame = +2

Query: 2   NPRNGMMPERIFTQTLIGRVLSDDIYMDFRCIATRNQDIGIGLVNRFITFRAQPISIRTP 181
           +PRNGMMPERIF+QTLIGRVL+DDIYM  RCIATRNQDIGIGLVNRFITFRAQPISIRTP
Sbjct: 233 SPRNGMMPERIFSQTLIGRVLADDIYMGPRCIATRNQDIGIGLVNRFITFRAQPISIRTP 292

Query: 182 FTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGI 361
           FTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGG 
Sbjct: 293 FTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGT 352

Query: 362 AEHARAPSNGKIKFNEGLVHPTRTRHGHPAFLCSIDLY 475
           AEH RAPSNGKIKFNE LVHPTRTRHGHPAFLCSIDLY
Sbjct: 353 AEHVRAPSNGKIKFNEDLVHPTRTRHGHPAFLCSIDLY 390


>ref|NP_783222.2| RNA polymerase beta'' subunit [Atropa belladonna]
          Length = 1385

 Score =  313 bits (803), Expect = 7e-84
 Identities = 150/158 (94%), Positives = 153/158 (96%)
 Frame = +2

Query: 2   NPRNGMMPERIFTQTLIGRVLSDDIYMDFRCIATRNQDIGIGLVNRFITFRAQPISIRTP 181
           +PRNGMMPERIF+QTLIGRVL+DDIYM  RCIATRNQDIGIGLVNRFITFRAQPISIRTP
Sbjct: 229 SPRNGMMPERIFSQTLIGRVLADDIYMGPRCIATRNQDIGIGLVNRFITFRAQPISIRTP 288

Query: 182 FTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGI 361
           FTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGG 
Sbjct: 289 FTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGT 348

Query: 362 AEHARAPSNGKIKFNEGLVHPTRTRHGHPAFLCSIDLY 475
           AEH RAPSNGKIKFNE LVHPTRTRHGHPAFLCSIDLY
Sbjct: 349 AEHVRAPSNGKIKFNEDLVHPTRTRHGHPAFLCSIDLY 386


>ref|YP_358662.2| RNA polymerase beta'' subunit [Nicotiana sylvestris]
           gi|126165915|ref|NP_054486.2| RNA polymerase beta''
           subunit [Nicotiana tabacum]
          Length = 1388

 Score =  313 bits (801), Expect = 1e-83
 Identities = 150/158 (94%), Positives = 152/158 (96%)
 Frame = +2

Query: 2   NPRNGMMPERIFTQTLIGRVLSDDIYMDFRCIATRNQDIGIGLVNRFITFRAQPISIRTP 181
           +PRNGMMPERIF QTLIGRVL+DDIYM  RCIATRNQDIGIGLVNRFITFRAQPISIRTP
Sbjct: 229 SPRNGMMPERIFIQTLIGRVLADDIYMGPRCIATRNQDIGIGLVNRFITFRAQPISIRTP 288

Query: 182 FTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGI 361
           FTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGG 
Sbjct: 289 FTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGT 348

Query: 362 AEHARAPSNGKIKFNEGLVHPTRTRHGHPAFLCSIDLY 475
           AEH RAPSNGKIKFNE LVHPTRTRHGHPAFLCSIDLY
Sbjct: 349 AEHVRAPSNGKIKFNEDLVHPTRTRHGHPAFLCSIDLY 386


>ref|YP_004891590.1| rpoC2 gene product (chloroplast) [Nicotiana undulata]
           gi|347453891|gb|AEO95549.1| RNA polymerase beta''
           subunit (chloroplast) [Nicotiana undulata]
           gi|347454002|gb|AEO95659.1| RNA polymerase beta''
           subunit [synthetic construct]
          Length = 1392

 Score =  313 bits (801), Expect = 1e-83
 Identities = 150/158 (94%), Positives = 152/158 (96%)
 Frame = +2

Query: 2   NPRNGMMPERIFTQTLIGRVLSDDIYMDFRCIATRNQDIGIGLVNRFITFRAQPISIRTP 181
           +PRNGMMPERIF QTLIGRVL+DDIYM  RCIATRNQDIGIGLVNRFITFRAQPISIRTP
Sbjct: 233 SPRNGMMPERIFIQTLIGRVLADDIYMGPRCIATRNQDIGIGLVNRFITFRAQPISIRTP 292

Query: 182 FTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGI 361
           FTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGG 
Sbjct: 293 FTCRSTSWICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGT 352

Query: 362 AEHARAPSNGKIKFNEGLVHPTRTRHGHPAFLCSIDLY 475
           AEH RAPSNGKIKFNE LVHPTRTRHGHPAFLCSIDLY
Sbjct: 353 AEHVRAPSNGKIKFNEDLVHPTRTRHGHPAFLCSIDLY 390