BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00043339
         (348 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002879469.1| pentatricopeptide repeat-containing protein ...    74   3e-14
ref|NP_180932.1| pentatricopeptide repeat-containing protein [Ar...    73   7e-14
ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containi...    69   1e-11
ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containi...    69   1e-11
ref|XP_003635166.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...    67   2e-11

>ref|XP_002879469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297325308|gb|EFH55728.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 583

 Score = 74.3 bits (181), Expect(2) = 3e-14
 Identities = 34/58 (58%), Positives = 43/58 (74%)
 Frame = +2

Query: 173 SNSNYTLTSVIKACGQRRDLGVRRVVHCHVLVSGYGLDVFVQAALVSFYAKVGDLRVA 346
           S SNYT TSVIK+C     L + + VHCH +VSG+GLD +VQAALV+FY+K GD+  A
Sbjct: 104 SPSNYTFTSVIKSCADLSALKIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEAA 161



 Score = 28.5 bits (62), Expect(2) = 3e-14
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 88  LITASSKLYHPLDTVFFYRHMMKHNVPP 171
           +I ++SKL  PL  V +YR M+  NV P
Sbjct: 78  VIKSTSKLRLPLHCVAYYRRMLSSNVSP 105


>ref|NP_180932.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75101013|sp|P93011.1|PP182_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g33760 gi|1707020|gb|AAC69141.1| hypothetical protein
           [Arabidopsis thaliana] gi|330253787|gb|AEC08881.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 583

 Score = 73.2 bits (178), Expect(2) = 7e-14
 Identities = 34/58 (58%), Positives = 43/58 (74%)
 Frame = +2

Query: 173 SNSNYTLTSVIKACGQRRDLGVRRVVHCHVLVSGYGLDVFVQAALVSFYAKVGDLRVA 346
           S SNYT TSVIK+C     L + + VHCH +VSG+GLD +VQAALV+FY+K GD+  A
Sbjct: 104 SPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEGA 161



 Score = 28.5 bits (62), Expect(2) = 7e-14
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 88  LITASSKLYHPLDTVFFYRHMMKHNVPP 171
           +I ++SKL  PL  V +YR M+  NV P
Sbjct: 78  VIKSTSKLRLPLHCVAYYRRMLSSNVSP 105


>ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 663

 Score = 68.6 bits (166), Expect(2) = 1e-11
 Identities = 31/56 (55%), Positives = 41/56 (73%)
 Frame = +2

Query: 179 SNYTLTSVIKACGQRRDLGVRRVVHCHVLVSGYGLDVFVQAALVSFYAKVGDLRVA 346
           SNYT TSVIKAC     L + + +H HV+V GYG D++VQAAL++ YAK  D++VA
Sbjct: 188 SNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVA 243



 Score = 25.8 bits (55), Expect(2) = 1e-11
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 88  LITASSKLYHPLDTVFFYRHMMKHNVP 168
           L+  +SK    +DTV FYR M+    P
Sbjct: 160 LLKVTSKFGFSIDTVLFYRRMLFSGAP 186


>ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 599

 Score = 68.6 bits (166), Expect(2) = 1e-11
 Identities = 31/56 (55%), Positives = 41/56 (73%)
 Frame = +2

Query: 179 SNYTLTSVIKACGQRRDLGVRRVVHCHVLVSGYGLDVFVQAALVSFYAKVGDLRVA 346
           SNYT TSVIKAC     L + + +H HV+V GYG D++VQAAL++ YAK  D++VA
Sbjct: 124 SNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVA 179



 Score = 25.8 bits (55), Expect(2) = 1e-11
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 88  LITASSKLYHPLDTVFFYRHMMKHNVP 168
           L+  +SK    +DTV FYR M+    P
Sbjct: 96  LLKVTSKFGFSIDTVLFYRRMLFSGAP 122


>ref|XP_003635166.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g33760-like [Vitis vinifera]
          Length = 561

 Score = 66.6 bits (161), Expect(2) = 2e-11
 Identities = 32/53 (60%), Positives = 38/53 (71%)
 Frame = +2

Query: 179 SNYTLTSVIKACGQRRDLGVRRVVHCHVLVSGYGLDVFVQAALVSFYAKVGDL 337
           SNYT T+VIKAC     L + R +H HVLV GY  D FVQAAL++FYAK GD+
Sbjct: 116 SNYTFTAVIKACADISALRIGRPIHSHVLVCGYDSDSFVQAALIAFYAKSGDV 168



 Score = 26.9 bits (58), Expect(2) = 2e-11
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 88  LITASSKLYHPLDTVFFYRHMMKHNVP 168
           +I ASSK     D + FYR M+  ++P
Sbjct: 88  IIKASSKFGFSCDAILFYRRMVADSIP 114