BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00043295
         (556 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAB82639.1| putative non-LTR retroelement reverse transcripta...    66   3e-09
gb|ADK92871.1| retrotransposon protein [Hypericum perforatum]          66   4e-09
gb|ABK28206.1| unknown [Arabidopsis thaliana]                          64   1e-08
ref|NP_180979.1| RNase H domain-containing protein [Arabidopsis ...    64   1e-08
ref|NP_194638.1| Ribonuclease H-like protein [Arabidopsis thalia...    63   3e-08

>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1374

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 50/164 (30%), Positives = 74/164 (45%), Gaps = 4/164 (2%)
 Frame = +3

Query: 57   PENLDSVACV---LWYLWKYRNGVVF-GDEVLDGEKIWQTGYLLDANYKSACSKPQTSTL 224
            PE  D  A +   LW LWK RN +VF G E    + I +    +DA       +PQ ++ 
Sbjct: 1148 PEESDHHALIPWILWRLWKNRNDLVFKGREFTAPQVILKATEDMDAWNNRKEPQPQVTSS 1207

Query: 225  QQQGRTSESWLKPIQE*IKLNTDASWSKAIDSGVAGCMVRNEDGVFLGARFVQLPWVASP 404
             +       W  P    +K NTD +WSK + +   G ++RN  G  L      LP   S 
Sbjct: 1208 TRD--RCVKWQPPSHGWVKCNTDGAWSKDLGNCGVGWVLRNHTGRLLWLGLRALPSQQSV 1265

Query: 405  IVAEAMAVRMGVEFAYSYNWRRLEVESDSRQLIEILTGRQQATS 536
            +  E  A+R  V     +N+RR+  ESDS+ L+ ++       S
Sbjct: 1266 LETEVEALRWAVLSLSRFNYRRVIFESDSQYLVSLIQNEMDIPS 1309


>gb|ADK92871.1| retrotransposon protein [Hypericum perforatum]
          Length = 593

 Score = 65.9 bits (159), Expect = 4e-09
 Identities = 48/161 (29%), Positives = 81/161 (50%), Gaps = 2/161 (1%)
 Frame = +3

Query: 78  ACVLWYLWKYRNGVVF--GDEVLDGEKIWQTGYLLDANYKSACSKPQTSTLQQQGRTSES 251
           A  LW +W+ RN +VF  G+E++  +++ + G+    ++      P   T++   RTS+ 
Sbjct: 381 AATLWIIWRVRNSIVFRTGEEIVICKEL-EKGFRFWQDFMDTEGNP---TVRGAPRTSK- 435

Query: 252 WLKPIQE*IKLNTDASWSKAIDSGVAGCMVRNEDGVFLGARFVQLPWVASPIVAEAMAVR 431
           W  P     K+N DA   +A   G  G +VR++ G F+ A     P +  P + E  AV 
Sbjct: 436 WNAPTAGFYKINVDAGL-RAERGGQVGIVVRDDTGAFVMATTRSFPNLVHPTLLEGQAVY 494

Query: 432 MGVEFAYSYNWRRLEVESDSRQLIEILTGRQQATSELEVIV 554
            G+EFA +    R+E+ESD   ++  L+      S+L  I+
Sbjct: 495 TGLEFANALGLERVELESDCLPVVMQLSKGYTDRSDLSNII 535


>gb|ABK28206.1| unknown [Arabidopsis thaliana]
          Length = 293

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 52/178 (29%), Positives = 82/178 (46%), Gaps = 12/178 (6%)
 Frame = +3

Query: 15  WWAHMSTQFHTLGCPENLDSVACVLWYLWKYRNGVVFGDEVLDGEKI----------WQT 164
           W  ++  +   LG   NL  V  +LW LWK RN ++F  +  D  ++          W T
Sbjct: 59  WVLNLEVEIPKLGKIGNL--VPWLLWRLWKSRNELMFKGKEYDAPEVLRRAMEDFEEWST 116

Query: 165 GYLLDANYKSACSKPQTSTLQQQGRTSESWLKPIQE*IKLNTDASWSKAIDSGVAGCMVR 344
              L+       S PQ      +   S  W  P  + +K NTDA+W         G ++R
Sbjct: 117 RRELEGK----ASGPQV-----ERNLSVQWKAPPYQWVKCNTDATWQLENPRCGIGWILR 167

Query: 345 NEDG--VFLGARFVQLPWVASPIVAEAMAVRMGVEFAYSYNWRRLEVESDSRQLIEIL 512
           NE G  +++GAR   LP   + + AE  A+R  V     +N++R+  ESD++ L+ +L
Sbjct: 168 NESGGVLWMGAR--ALPRTKNVLEAELEALRWAVLTMSRFNYKRIIFESDAQALVNLL 223


>ref|NP_180979.1| RNase H domain-containing protein [Arabidopsis thaliana]
           gi|3337363|gb|AAC27408.1| putative non-LTR retroelement
           reverse transcriptase [Arabidopsis thaliana]
           gi|91805481|gb|ABE65469.1| hypothetical protein
           At2g34320 [Arabidopsis thaliana]
           gi|330253864|gb|AEC08958.1| RNase H domain-containing
           protein [Arabidopsis thaliana]
          Length = 292

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 52/178 (29%), Positives = 82/178 (46%), Gaps = 12/178 (6%)
 Frame = +3

Query: 15  WWAHMSTQFHTLGCPENLDSVACVLWYLWKYRNGVVFGDEVLDGEKI----------WQT 164
           W  ++  +   LG   NL  V  +LW LWK RN ++F  +  D  ++          W T
Sbjct: 59  WVLNLEVEIPKLGKIGNL--VPWLLWRLWKSRNELMFKGKEYDAPEVLRRAMEDFEEWST 116

Query: 165 GYLLDANYKSACSKPQTSTLQQQGRTSESWLKPIQE*IKLNTDASWSKAIDSGVAGCMVR 344
              L+       S PQ      +   S  W  P  + +K NTDA+W         G ++R
Sbjct: 117 RRELEGK----ASGPQV-----ERNLSVQWKAPPYQWVKCNTDATWQLENPRCGIGWILR 167

Query: 345 NEDG--VFLGARFVQLPWVASPIVAEAMAVRMGVEFAYSYNWRRLEVESDSRQLIEIL 512
           NE G  +++GAR   LP   + + AE  A+R  V     +N++R+  ESD++ L+ +L
Sbjct: 168 NESGGVLWMGAR--ALPRTKNVLEAELEALRWAVLTMSRFNYKRIIFESDAQALVNLL 223


>ref|NP_194638.1| Ribonuclease H-like protein [Arabidopsis thaliana]
           gi|4972055|emb|CAB43923.1| putative protein [Arabidopsis
           thaliana] gi|7269807|emb|CAB79667.1| putative protein
           [Arabidopsis thaliana] gi|67633766|gb|AAY78807.1|
           putative reverse transcriptase/RNA-dependent DNA
           polymerase [Arabidopsis thaliana]
           gi|332660185|gb|AEE85585.1| Ribonuclease H-like protein
           [Arabidopsis thaliana]
          Length = 575

 Score = 63.2 bits (152), Expect = 3e-08
 Identities = 47/149 (31%), Positives = 74/149 (49%), Gaps = 3/149 (2%)
 Frame = +3

Query: 75  VACVLWYLWKYRNGVVFGDEVLDGEKIWQTGYLLDANYKSACSKPQTSTLQQQGRTS-ES 251
           V  +LW LWK RN +VF     + +++ +        ++         T  Q  R+S   
Sbjct: 360 VPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEEWRIRTEAESCGTKPQVNRSSCGR 419

Query: 252 WLKPIQE*IKLNTDASWSKAIDSGVAGCMVRNEDG--VFLGARFVQLPWVASPIVAEAMA 425
           W  P  + +K NTDA+W++  +    G ++RNE G   ++GAR   LP + S + AE  A
Sbjct: 420 WRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEVKWMGAR--ALPKLKSVLEAELEA 477

Query: 426 VRMGVEFAYSYNWRRLEVESDSRQLIEIL 512
           +R  V     + +  +  ESDS+ LIEIL
Sbjct: 478 MRWAVLSLSRFQYNYVIFESDSQVLIEIL 506