BLASTX nr result
ID: Lithospermum22_contig00043104
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lithospermum22_contig00043104
(999 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol p... 145 2e-39
gb|AAR88589.1| putative copia-like retrotransposon protein [Oryz... 144 2e-39
gb|ABA94365.1| retrotransposon protein, putative, unclassified [... 141 3e-39
gb|AAT93988.1| putative polyprotein [Oryza sativa Japonica Group] 136 4e-39
ref|NP_001174286.1| Os05g0235100 [Oryza sativa Japonica Group] g... 136 4e-39
>dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol polyprotein [Oryza
sativa Japonica Group]
Length = 1448
Score = 145 bits (367), Expect(2) = 2e-39
Identities = 79/152 (51%), Positives = 98/152 (64%), Gaps = 2/152 (1%)
Frame = +3
Query: 261 VTFDWSIKQLDIQNGVLNGDLTEAVYMQQLPGFASESDSTWVCKLNK--YLLKQAPRAWF 434
V+ WS++QLD+QN L+G L E VYMQQ PGF S S +VCKLNK Y LKQAPRAW+
Sbjct: 1038 VSRGWSLRQLDVQNDFLHGFLEEEVYMQQPPGFESSSKPDYVCKLNKALYGLKQAPRAWY 1097
Query: 435 DCLQTFLTRYGFTTSKADSSLFIYRHGDVSMFMLVYVHDIIVTGSHVSHVNQFISTLSKA 614
L LT GF SKAD+SLF G + MF+LVYV DIIV S + L+K
Sbjct: 1098 SRLSKKLTELGFEASKADTSLFFLNKGGIIMFVLVYVDDIIVASSTEKATTALLKDLNKE 1157
Query: 615 FVLRDLGDLDFYLGISLTKSAGGSLFLSQRLY 710
F L+DLGDL ++LGI +TK + G + L+Q Y
Sbjct: 1158 FTLKDLGDLHYFLGIEVTKVSNG-VILTQEKY 1188
Score = 43.5 bits (101), Expect(2) = 2e-39
Identities = 26/59 (44%), Positives = 31/59 (52%), Gaps = 10/59 (16%)
Frame = +1
Query: 685 VCFSHRGYIVDLLQRSGMSTCKGVSTPLSSTAFFA----------DPTKYRQIVGALQY 831
V + Y D+L+R MS CK VSTPLS + D T+YR IVGALQY
Sbjct: 1181 VILTQEKYANDMLKRVNMSNCKPVSTPLSVSEKLTLYEGSPLGPNDATQYRSIVGALQY 1239
>gb|AAR88589.1| putative copia-like retrotransposon protein [Oryza sativa Japonica
Group]
Length = 1399
Score = 144 bits (362), Expect(2) = 2e-39
Identities = 77/152 (50%), Positives = 101/152 (66%), Gaps = 2/152 (1%)
Frame = +3
Query: 261 VTFDWSIKQLDIQNGVLNGDLTEAVYMQQLPGFASESDSTWVCKLNK--YLLKQAPRAWF 434
V+ WS++QLD++N L+G L E VYM+Q PG+ +S +VCKL+K Y LKQAPRAW+
Sbjct: 983 VSRGWSLRQLDVKNAFLHGVLEEEVYMKQPPGYEKKSMPNYVCKLDKALYGLKQAPRAWY 1042
Query: 435 DCLQTFLTRYGFTTSKADSSLFIYRHGDVSMFMLVYVHDIIVTGSHVSHVNQFISTLSKA 614
L T L+ GF SKAD+SLF Y+ G VS+F+L+YV DIIV S + + LSK
Sbjct: 1043 SRLSTKLSELGFVPSKADTSLFFYKKGQVSIFLLIYVDDIIVASSVPDATSTLLQELSKD 1102
Query: 615 FVLRDLGDLDFYLGISLTKSAGGSLFLSQRLY 710
F L+DLGDL ++LGI + K G L LSQ Y
Sbjct: 1103 FALKDLGDLHYFLGIEVHKVKDG-LMLSQEKY 1133
Score = 45.4 bits (106), Expect(2) = 2e-39
Identities = 26/56 (46%), Positives = 32/56 (57%), Gaps = 10/56 (17%)
Frame = +1
Query: 694 SHRGYIVDLLQRSGMSTCKGVSTPLSSTAFFA----------DPTKYRQIVGALQY 831
S Y DLL+R GM CK VSTPLS++ + D T+YR +VGALQY
Sbjct: 1129 SQEKYASDLLRRVGMYECKPVSTPLSTSEKLSVNEGTLLGPQDSTQYRSVVGALQY 1184
>gb|ABA94365.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1064
Score = 141 bits (356), Expect(2) = 3e-39
Identities = 75/148 (50%), Positives = 98/148 (66%), Gaps = 2/148 (1%)
Frame = +3
Query: 273 WSIKQLDIQNGVLNGDLTEAVYMQQLPGFASESDSTWVCKLNK--YLLKQAPRAWFDCLQ 446
W I QLD++N L+G+L E VY QQ GF S T VC L K Y LKQAPRAW+
Sbjct: 700 WPIHQLDVKNAFLHGNLEETVYCQQPSGFVDPSAPTAVCLLQKSLYGLKQAPRAWYQRFA 759
Query: 447 TFLTRYGFTTSKADSSLFIYRHGDVSMFMLVYVHDIIVTGSHVSHVNQFISTLSKAFVLR 626
T++ + GFT+S +D+SLFIY+ GD ++L+YV DI++T S S + + L F +
Sbjct: 760 TYICQLGFTSSASDTSLFIYKDGDNIAYLLLYVDDILLTASSTSLLQHITARLHSEFAMT 819
Query: 627 DLGDLDFYLGISLTKSAGGSLFLSQRLY 710
DLGDL F+LGIS+T+SA G LFLSQR Y
Sbjct: 820 DLGDLHFFLGISVTRSADG-LFLSQRQY 846
Score = 47.8 bits (112), Expect(2) = 3e-39
Identities = 25/54 (46%), Positives = 33/54 (61%), Gaps = 8/54 (14%)
Frame = +1
Query: 694 SHRGYIVDLLQRSGMSTCKGVSTPLSST--------AFFADPTKYRQIVGALQY 831
S R Y VDLL+R+GMS C +TP+ + A +DPT+YR + GALQY
Sbjct: 842 SQRQYAVDLLRRAGMSECHPTATPVDARCKLSAIDGAPVSDPTEYRSLAGALQY 895
>gb|AAT93988.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1480
Score = 136 bits (342), Expect(2) = 4e-39
Identities = 71/148 (47%), Positives = 98/148 (66%), Gaps = 2/148 (1%)
Frame = +3
Query: 273 WSIKQLDIQNGVLNGDLTEAVYMQQLPGFASESDSTWVCKLNK--YLLKQAPRAWFDCLQ 446
W I QLD++N L+G+L E VY QQ GF S VC L K Y LKQAPRAW+
Sbjct: 1068 WPIHQLDVKNAFLHGNLEETVYYQQPSGFVDPSAPNAVCLLQKSLYGLKQAPRAWYQRFA 1127
Query: 447 TFLTRYGFTTSKADSSLFIYRHGDVSMFMLVYVHDIIVTGSHVSHVNQFISTLSKAFVLR 626
T++ + GFT+S +++SLF+Y+ GD ++L+YV DII+T S + ++ + L F +
Sbjct: 1128 TYIRQLGFTSSASNTSLFVYKDGDNIAYLLLYVDDIILTASSATLLHHITARLHSEFAMT 1187
Query: 627 DLGDLDFYLGISLTKSAGGSLFLSQRLY 710
DLGDL F+LGIS+T+S+ G LFLSQR Y
Sbjct: 1188 DLGDLHFFLGISVTRSSDG-LFLSQRQY 1214
Score = 52.4 bits (124), Expect(2) = 4e-39
Identities = 29/54 (53%), Positives = 37/54 (68%), Gaps = 8/54 (14%)
Frame = +1
Query: 694 SHRGYIVDLLQRSGMSTCKGVSTP------LSST--AFFADPTKYRQIVGALQY 831
S R Y+VDLL+R+GMS C +TP LS+T A +DPT+YR +VGALQY
Sbjct: 1210 SQRQYVVDLLKRAGMSECHSTATPVDARSKLSATDGAPVSDPTEYRSLVGALQY 1263
>ref|NP_001174286.1| Os05g0235100 [Oryza sativa Japonica Group]
gi|255676152|dbj|BAH93014.1| Os05g0235100, partial
[Oryza sativa Japonica Group]
Length = 841
Score = 136 bits (342), Expect(2) = 4e-39
Identities = 71/148 (47%), Positives = 98/148 (66%), Gaps = 2/148 (1%)
Frame = +3
Query: 273 WSIKQLDIQNGVLNGDLTEAVYMQQLPGFASESDSTWVCKLNK--YLLKQAPRAWFDCLQ 446
W I QLD++N L+G+L E VY QQ GF S VC L K Y LKQAPRAW+
Sbjct: 429 WPIHQLDVKNAFLHGNLEETVYYQQPSGFVDPSAPNAVCLLQKSLYGLKQAPRAWYQRFA 488
Query: 447 TFLTRYGFTTSKADSSLFIYRHGDVSMFMLVYVHDIIVTGSHVSHVNQFISTLSKAFVLR 626
T++ + GFT+S +++SLF+Y+ GD ++L+YV DII+T S + ++ + L F +
Sbjct: 489 TYIRQLGFTSSASNTSLFVYKDGDNIAYLLLYVDDIILTASSATLLHHITARLHSEFAMT 548
Query: 627 DLGDLDFYLGISLTKSAGGSLFLSQRLY 710
DLGDL F+LGIS+T+S+ G LFLSQR Y
Sbjct: 549 DLGDLHFFLGISVTRSSDG-LFLSQRQY 575
Score = 52.4 bits (124), Expect(2) = 4e-39
Identities = 29/54 (53%), Positives = 37/54 (68%), Gaps = 8/54 (14%)
Frame = +1
Query: 694 SHRGYIVDLLQRSGMSTCKGVSTP------LSST--AFFADPTKYRQIVGALQY 831
S R Y+VDLL+R+GMS C +TP LS+T A +DPT+YR +VGALQY
Sbjct: 571 SQRQYVVDLLKRAGMSECHSTATPVDARSKLSATDGAPVSDPTEYRSLVGALQY 624