BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00042761
         (354 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN83506.1| hypothetical protein VITISV_027576 [Vitis vinifera]    77   2e-15
gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]               69   3e-14
gb|AAU90288.2| Polyprotein, putative [Solanum demissum]                72   1e-13
emb|CAN83798.1| hypothetical protein VITISV_039072 [Vitis vinifera]    77   1e-13
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc...    77   2e-13

>emb|CAN83506.1| hypothetical protein VITISV_027576 [Vitis vinifera]
          Length = 1172

 Score = 77.0 bits (188), Expect(2) = 2e-15
 Identities = 39/85 (45%), Positives = 57/85 (67%), Gaps = 6/85 (7%)
 Frame = -1

Query: 237 RKLMS------IRSNT*TLVPHNSSMNVIGCRWIFKLKPDAMSNVV*RPARLLAKGSHQ* 76
           RK MS      +R+ T  LVP N S NV+GC+WIF+ K ++  ++    ARL+AKG HQ 
Sbjct: 669 RKAMSEEYDALVRNGTWELVPSNPSQNVVGCKWIFRTKRNSDGSIDRFKARLVAKGFHQR 728

Query: 75  EVVDYFDTFSPFIKHSTVRILLSLA 1
             +DY+DTFSP +K +T+ ++LS+A
Sbjct: 729 PDIDYYDTFSPVVKPTTIMLVLSVA 753



 Score = 29.6 bits (65), Expect(2) = 2e-15
 Identities = 14/22 (63%), Positives = 15/22 (68%)
 Frame = -3

Query: 298 IEPTCFTQANKCPLWRAAMREE 233
           +EPT  TQA K P WR AM EE
Sbjct: 654 LEPTTPTQALKDPKWRKAMSEE 675


>gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]
          Length = 1384

 Score = 68.9 bits (167), Expect(2) = 3e-14
 Identities = 33/73 (45%), Positives = 52/73 (71%)
 Frame = -1

Query: 219  RSNT*TLVPHNSSMNVIGCRWIFKLKPDAMSNVV*RPARLLAKGSHQ*EVVDYFDTFSPF 40
            ++ T  LVP +S MN++  +W+F++K  +  +V    ARL+A G HQ E +DY +TFSP 
Sbjct: 899  QAGTWFLVPPSSLMNILPNKWVFRIKKRSDGSVERYKARLVANGFHQQEGLDYTETFSPV 958

Query: 39   IKHSTVRILLSLA 1
            +KHST+R++L+LA
Sbjct: 959  VKHSTIRLVLALA 971



 Score = 34.3 bits (77), Expect(2) = 3e-14
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = -3

Query: 298 IEPTCFTQANKCPLWRAAMREE 233
           +EPTC+TQA K P WR AM  E
Sbjct: 872 LEPTCYTQAAKYPEWREAMDHE 893


>gb|AAU90288.2| Polyprotein, putative [Solanum demissum]
          Length = 1017

 Score = 72.0 bits (175), Expect(2) = 1e-13
 Identities = 36/74 (48%), Positives = 52/74 (70%)
 Frame = -1

Query: 222 IRSNT*TLVPHNSSMNVIGCRWIFKLKPDAMSNVV*RPARLLAKGSHQ*EVVDYFDTFSP 43
           I++ T  LVP + S N+IGC+W+FK K  +  ++    ARL+AKG HQ   +D+ DTFSP
Sbjct: 660 IQNGTWELVPLSPSQNIIGCKWVFKRKLKSDGSLDRYKARLVAKGYHQRPGLDFADTFSP 719

Query: 42  FIKHSTVRILLSLA 1
            +K +T+R+LLSLA
Sbjct: 720 VVKPATIRLLLSLA 733



 Score = 28.9 bits (63), Expect(2) = 1e-13
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -3

Query: 301 LIEPTCFTQANKCPLWRAAMREEIN 227
           ++EP+C ++A K   WR AM EE N
Sbjct: 633 IVEPSCHSRAIKDVHWRHAMSEEYN 657


>emb|CAN83798.1| hypothetical protein VITISV_039072 [Vitis vinifera]
          Length = 787

 Score = 77.4 bits (189), Expect(2) = 1e-13
 Identities = 38/74 (51%), Positives = 51/74 (68%)
 Frame = -1

Query: 222 IRSNT*TLVPHNSSMNVIGCRWIFKLKPDAMSNVV*RPARLLAKGSHQ*EVVDYFDTFSP 43
           + +NT TLVP      VIGC+W+FK+K     +V    ARL+AKG HQ   +DYF+TFSP
Sbjct: 469 LNNNTWTLVPPTLGQKVIGCKWVFKIKLKPDGSVECYKARLVAKGFHQTHGLDYFETFSP 528

Query: 42  FIKHSTVRILLSLA 1
            +K +T+RI+LSLA
Sbjct: 529 IVKPTTIRIVLSLA 542



 Score = 23.5 bits (49), Expect(2) = 1e-13
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 301 LIEPTCFTQANKCPLWRAAMREE 233
           L EPT + QA +   WR AM  E
Sbjct: 442 LFEPTTYHQAARHAHWRQAMDTE 464


>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
            gi|531389|gb|AAA57005.1| copia-like retrotransposon
            Hopscotch polyprotein [Zea mays]
          Length = 1439

 Score = 76.6 bits (187), Expect(2) = 2e-13
 Identities = 37/73 (50%), Positives = 54/73 (73%)
 Frame = -1

Query: 219  RSNT*TLVPHNSSMNVIGCRWIFKLKPDAMSNVV*RPARLLAKGSHQ*EVVDYFDTFSPF 40
            ++NT TLVP + + N+I C+W+FK+K +A  ++    ARL+AKG  Q   +DY DTFSP 
Sbjct: 950  KNNTWTLVPPDRTRNLIDCKWVFKVKYNADGSIDRLKARLVAKGFKQQYGIDYDDTFSPV 1009

Query: 39   IKHSTVRILLSLA 1
            +KHST+R++LSLA
Sbjct: 1010 VKHSTIRLVLSLA 1022



 Score = 23.9 bits (50), Expect(2) = 2e-13
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 301 LIEPTCFTQANKCPLWRAAMREE 233
           + EP+  ++A   P WRAAM  E
Sbjct: 922 ITEPSSVSEALADPQWRAAMEAE 944