BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00042654
         (354 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   128   4e-28
emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera]   123   2e-26
ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricin...   122   3e-26
ref|XP_002298071.1| RNA polymerase IV subunit [Populus trichocar...   114   6e-24
ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D sub...   107   1e-21

>ref|XP_002275898.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase D
           subunit 1-like [Vitis vinifera]
          Length = 1560

 Score =  128 bits (322), Expect = 4e-28
 Identities = 62/113 (54%), Positives = 85/113 (75%)
 Frame = +2

Query: 5   RVLESIQVSKLRPEKSTNNDSAAIPSGSKYMKELLLAKRSDHAFRMVVVGDPYIKLSEVG 184
           RVL+ ++ SKLR EKST+ DSA+  SG K++KE+LL KR++H+FRM+VVGDP ++LSE+G
Sbjct: 313 RVLDCLKTSKLRSEKSTSKDSASKMSGLKWIKEVLLGKRTNHSFRMIVVGDPKLRLSEIG 372

Query: 185 VPWHIAERLKVSEVLNRWNWDKLLVYCELMTLGKGQISVRRDGDLVCLRSIDE 343
           +P HIAE L +SE LN WNW+K+   C L  L KGQ  VRR G L  +R +++
Sbjct: 373 IPCHIAEELLISEHLNSWNWEKVTNGCNLRLLEKGQTYVRRKGTLAPVRRMND 425


>emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera]
          Length = 1393

 Score =  123 bits (308), Expect = 2e-26
 Identities = 62/116 (53%), Positives = 85/116 (73%), Gaps = 3/116 (2%)
 Frame = +2

Query: 5   RVLESIQVSK---LRPEKSTNNDSAAIPSGSKYMKELLLAKRSDHAFRMVVVGDPYIKLS 175
           RVL+ ++ SK   LR EKST+ DSA+  SG K++KE+LL KR++H+FRM+VVGDP ++LS
Sbjct: 280 RVLDCLKTSKASNLRSEKSTSKDSASKMSGLKWIKEVLLGKRTNHSFRMIVVGDPKLRLS 339

Query: 176 EVGVPWHIAERLKVSEVLNRWNWDKLLVYCELMTLGKGQISVRRDGDLVCLRSIDE 343
           E+G+P HIAE L +SE LN WNW+K+   C L  L KGQ  VRR G L  +R +++
Sbjct: 340 EIGIPCHIAEELLISEHLNSWNWEKVTNGCNLRLLEKGQTYVRRKGTLAPVRRMND 395


>ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricinus communis]
           gi|223549595|gb|EEF51083.1| DNA-directed RNA polymerase,
           putative [Ricinus communis]
          Length = 1475

 Score =  122 bits (306), Expect = 3e-26
 Identities = 61/127 (48%), Positives = 88/127 (69%), Gaps = 11/127 (8%)
 Frame = +2

Query: 5   RVLESIQVSKLRPEKSTNND-----------SAAIPSGSKYMKELLLAKRSDHAFRMVVV 151
           RVL+ ++ SK+ P+KS NND           S++  SG +++K+++L KR+D++FRMVVV
Sbjct: 275 RVLDCLKTSKINPDKSVNNDDYMALQRKMNDSSSSSSGLRWIKDVVLGKRNDNSFRMVVV 334

Query: 152 GDPYIKLSEVGVPWHIAERLKVSEVLNRWNWDKLLVYCELMTLGKGQISVRRDGDLVCLR 331
           GDP IK SE+G+P  IAERL++SE L  WNWDKL   CE+  L KG + VRR+G LV +R
Sbjct: 335 GDPNIKFSEIGIPCPIAERLQISEHLTTWNWDKLNTCCEVRLLEKGDMHVRREGKLVRVR 394

Query: 332 SIDEVKL 352
              E+++
Sbjct: 395 RTKELRI 401


>ref|XP_002298071.1| RNA polymerase IV subunit [Populus trichocarpa]
           gi|222845329|gb|EEE82876.1| RNA polymerase IV subunit
           [Populus trichocarpa]
          Length = 1517

 Score =  114 bits (286), Expect = 6e-24
 Identities = 56/126 (44%), Positives = 85/126 (67%), Gaps = 11/126 (8%)
 Frame = +2

Query: 8   VLESIQVSKLRPEKSTN-----------NDSAAIPSGSKYMKELLLAKRSDHAFRMVVVG 154
           V++ ++ SKL P+KS N           ND     SG +++K+++L KR+DH+FRMV+VG
Sbjct: 309 VMDCLKTSKLNPDKSGNIDPWTAQPKKSNDYVNNASGLRWIKDVVLGKRNDHSFRMVIVG 368

Query: 155 DPYIKLSEVGVPWHIAERLKVSEVLNRWNWDKLLVYCELMTLGKGQISVRRDGDLVCLRS 334
           DP+++L E+G+P HIAERL++SE L  WNW+KL    E     KG + VRR+G+LV +R 
Sbjct: 369 DPHLQLHEIGIPCHIAERLQISESLTAWNWEKLNACFEKSRFEKGDMHVRREGNLVRVRH 428

Query: 335 IDEVKL 352
           + E++L
Sbjct: 429 MKELRL 434


>ref|XP_004147993.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Cucumis
           sativus] gi|449494342|ref|XP_004159519.1| PREDICTED: LOW
           QUALITY PROTEIN: DNA-directed RNA polymerase D subunit
           1-like [Cucumis sativus]
          Length = 1469

 Score =  107 bits (266), Expect = 1e-21
 Identities = 51/97 (52%), Positives = 73/97 (75%)
 Frame = +2

Query: 62  DSAAIPSGSKYMKELLLAKRSDHAFRMVVVGDPYIKLSEVGVPWHIAERLKVSEVLNRWN 241
           D+A   SG +++K+++L KRSDH FRMVVVGDP I+LSE+G+P H+AERL++SE L+ WN
Sbjct: 311 DTATSSSGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAERLQISEHLSSWN 370

Query: 242 WDKLLVYCELMTLGKGQISVRRDGDLVCLRSIDEVKL 352
             KL   C L  + KG+I VRR+G LV +R++ E+ +
Sbjct: 371 MKKLSTSCYLHLVEKGEIYVRREGRLVRVRNVLELNM 407