BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00042547
         (265 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc...    53   1e-07
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,...    44   1e-06

>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
          Length = 1214

 Score = 52.8 bits (125), Expect(2) = 1e-07
 Identities = 30/65 (46%), Positives = 40/65 (61%)
 Frame = -1

Query: 214 KGGR*GDPLSPSLFILAEEYLLRGLQQLYERHEDLNYQCGCNVRVPALAFAHDVMIFSNG 35
           KG R GDPLSPSLF++A E L R L+  +       +     VR+ +LAFA D+MIF +G
Sbjct: 647 KGLRQGDPLSPSLFVIAMEILSRLLENKFSDGSIGYHPKASEVRISSLAFADDLMIFYDG 706

Query: 34  SKASL 20
             +SL
Sbjct: 707 KASSL 711



 Score = 27.7 bits (60), Expect(2) = 1e-07
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 261 FSILLNGQSAGFFKSEKGVGRGTP 190
           FSI ++G   G+FK  KG+ +G P
Sbjct: 631 FSINVSGSLCGYFKGSKGLRQGDP 654


>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
           [Arabidopsis thaliana]
          Length = 1164

 Score = 43.9 bits (102), Expect(2) = 1e-06
 Identities = 27/65 (41%), Positives = 34/65 (52%)
 Frame = -1

Query: 214 KGGR*GDPLSPSLFILAEEYLLRGLQQLYERHEDLNYQCGCNVRVPALAFAHDVMIFSNG 35
           KG R GDP+SP LF+LA E     LQ  Y       +     + +  L FA DVMIF +G
Sbjct: 545 KGLRQGDPMSPYLFVLAMEVFSGLLQSRYTSGYIAYHPKTSQLEISHLMFADDVMIFFDG 604

Query: 34  SKASL 20
             +SL
Sbjct: 605 KSSSL 609



 Score = 33.1 bits (74), Expect(2) = 1e-06
 Identities = 14/24 (58%), Positives = 18/24 (75%)
 Frame = -2

Query: 261 FSILLNGQSAGFFKSEKGVGRGTP 190
           FS++LNG SAG F S KG+ +G P
Sbjct: 529 FSVILNGHSAGHFWSSKGLRQGDP 552