BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00042242
         (367 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF97969.1|AC000103_19 F21J9.30 [Arabidopsis thaliana]             115   4e-24
gb|AAG03119.1|AC004133_13 F5A9.24 [Arabidopsis thaliana]              115   4e-24
pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW1...   114   8e-24
gb|AAF18538.1|AC006551_24 Very similar to retrotransposon revers...   113   2e-23
dbj|BAM28750.1| reverse transcriptase-like protein, partial [Cam...   110   1e-22

>gb|AAF97969.1|AC000103_19 F21J9.30 [Arabidopsis thaliana]
          Length = 1270

 Score =  115 bits (288), Expect = 4e-24
 Identities = 57/125 (45%), Positives = 81/125 (64%), Gaps = 3/125 (2%)
 Frame = +1

Query: 1    PIQICKKIDSIVANY*W-RLGMNKKTHWIV*EQLCKSKEEGGLGFRRTQDFNQVLLCKQA 177
            PI  C+ ++S +A++ W     ++K HW   E+LC  K+ GGLGFR  Q FNQ LL KQA
Sbjct: 774  PITTCENLESAMASFWWDSCDHSRKIHWQSWERLCLPKDSGGLGFRDIQSFNQALLAKQA 833

Query: 178  WRLITEPNCQLAKTLKARYYG--DFFSAKLGSASSFTWRSLLSVRDLLSNGIE*KLGRGQ 351
            WRL+  P+C L++ LK+RY+   DF  A L    SF WRS+L  R+LLS G++ ++G G 
Sbjct: 834  WRLLHFPDCLLSRLLKSRYFDATDFLDAALSQRPSFGWRSILFGRELLSKGLQKRVGDGA 893

Query: 352  SINIW 366
            S+ +W
Sbjct: 894  SLFVW 898


>gb|AAG03119.1|AC004133_13 F5A9.24 [Arabidopsis thaliana]
          Length = 1254

 Score =  115 bits (288), Expect = 4e-24
 Identities = 57/125 (45%), Positives = 81/125 (64%), Gaps = 3/125 (2%)
 Frame = +1

Query: 1    PIQICKKIDSIVANY*W-RLGMNKKTHWIV*EQLCKSKEEGGLGFRRTQDFNQVLLCKQA 177
            PI  C+ ++S +A++ W     ++K HW   E+LC  K+ GGLGFR  Q FNQ LL KQA
Sbjct: 777  PITTCENLESAMASFWWDSCDHSRKIHWQSWERLCLPKDSGGLGFRDIQSFNQALLAKQA 836

Query: 178  WRLITEPNCQLAKTLKARYYG--DFFSAKLGSASSFTWRSLLSVRDLLSNGIE*KLGRGQ 351
            WRL+  P+C L++ LK+RY+   DF  A L    SF WRS+L  R+LLS G++ ++G G 
Sbjct: 837  WRLLHFPDCLLSRLLKSRYFDATDFLDAALSQRPSFGWRSILFGRELLSKGLQKRVGDGA 896

Query: 352  SINIW 366
            S+ +W
Sbjct: 897  SLFVW 901


>pir||S65812 RNA-directed DNA polymerase (EC 2.7.7.49) (clone DW15) - Arabidopsis
            thaliana retrotransposon Ta11-1 gi|976278|gb|AAA75254.1|
            reverse transcriptase [Arabidopsis thaliana]
          Length = 1333

 Score =  114 bits (285), Expect = 8e-24
 Identities = 56/121 (46%), Positives = 76/121 (62%), Gaps = 3/121 (2%)
 Frame = +1

Query: 13   CKKIDSIVANY*WR-LGMNKKTHWIV*EQLCKSKEEGGLGFRRTQDFNQVLLCKQAWRLI 189
            C  + S ++++ W  L   +KTHW+  E++C SKE GGLGFR  + FNQ LL KQAWRL+
Sbjct: 817  CVNMTSAMSDFWWNALEHKRKTHWVSCEKMCLSKENGGLGFRDIESFNQALLAKQAWRLL 876

Query: 190  TEPNCQLAKTLKARYYG--DFFSAKLGSASSFTWRSLLSVRDLLSNGIE*KLGRGQSINI 363
              PN   A+  K+RYY   DF  A+L +  S+ WRS+L  RDLL  G   K+G G S ++
Sbjct: 877  QFPNSLFARFFKSRYYDEEDFLDAELKATPSYAWRSILHGRDLLIKGFRKKVGNGSSTSV 936

Query: 364  W 366
            W
Sbjct: 937  W 937


>gb|AAF18538.1|AC006551_24 Very similar to retrotransposon reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1231

 Score =  113 bits (282), Expect = 2e-23
 Identities = 56/125 (44%), Positives = 79/125 (63%), Gaps = 3/125 (2%)
 Frame = +1

Query: 1    PIQICKKIDSIVANY*WRLGMN-KKTHWIV*EQLCKSKEEGGLGFRRTQDFNQVLLCKQA 177
            P   C  + S +A++ W    + +K HW+  E+LC  KE GGLGFR    FNQ LL KQA
Sbjct: 659  PKTTCTNLASAMADFWWSANDHQRKIHWLSWEKLCLPKEHGGLGFRDIGLFNQALLAKQA 718

Query: 178  WRLITEPNCQLAKTLKARYY--GDFFSAKLGSASSFTWRSLLSVRDLLSNGIE*KLGRGQ 351
            WRL+  P+C  A+ +K+RY+  G+F  + +GS  SF WRS+L  RDLL  G+  ++G G+
Sbjct: 719  WRLLQFPDCLFARLIKSRYFPVGEFLDSDVGSRPSFGWRSILHGRDLLCRGLVKRVGNGK 778

Query: 352  SINIW 366
            SI +W
Sbjct: 779  SIRVW 783


>dbj|BAM28750.1| reverse transcriptase-like protein, partial [Camellia sinensis var.
           sinensis]
          Length = 255

 Score =  110 bits (275), Expect = 1e-22
 Identities = 55/124 (44%), Positives = 78/124 (62%), Gaps = 3/124 (2%)
 Frame = +1

Query: 1   PIQICKKIDSIVANY*W-RLGMNKKTHWIV*EQLCKSKEEGGLGFRRTQDFNQVLLCKQA 177
           P  +C +I+S+V N+ W +    +K HW   +QLCKSK +GG+GFR  Q FN  LL KQ 
Sbjct: 60  PDGVCHEIESMVCNFWWXQKEETRKIHWTSWKQLCKSKLQGGMGFRCLQXFNSALLAKQC 119

Query: 178 WRLITEPNCQLAKTLKARYY--GDFFSAKLGSASSFTWRSLLSVRDLLSNGIE*KLGRGQ 351
           WRL+  P   +A+  KARY+    F  A +GS  SFTWRS++  R LL+ G+  ++G G 
Sbjct: 120 WRLVQRPQSLVARVFKARYFPQTSFLDALVGSNPSFTWRSIVGSRSLLNAGLRWRVGNGA 179

Query: 352 SINI 363
           SI++
Sbjct: 180 SISV 183