BLASTX nr result

ID: Lithospermum22_contig00041872 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00041872
         (285 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004134418.1| PREDICTED: putative SWI/SNF-related matrix-a...   139   2e-31
ref|NP_199166.1| Helicase protein with RING/U-box domain [Arabid...   137   1e-30
ref|XP_002865418.1| SNF2 domain-containing protein [Arabidopsis ...   137   1e-30
ref|XP_002529311.1| DNA repair helicase rad5,16, putative [Ricin...   133   2e-29
emb|CBI23583.3| unnamed protein product [Vitis vinifera]              128   4e-28

>ref|XP_004134418.1| PREDICTED: putative SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin subfamily A
           member 3-like 3-like [Cucumis sativus]
           gi|449523563|ref|XP_004168793.1| PREDICTED: putative
           SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin subfamily A member 3-like 3-like
           [Cucumis sativus]
          Length = 1113

 Score =  139 bits (350), Expect = 2e-31
 Identities = 64/94 (68%), Positives = 74/94 (78%)
 Frame = +2

Query: 2   GAVDVYDLKEMDPPATLSCDLKPYQKQALYWMTXXXXXXXXXXXXXILHPCWEAYRICDK 181
           GAVD+Y+L EM+PP TL+CDL+PYQKQAL+WM+              LHPCW AYRICD+
Sbjct: 435 GAVDMYNLDEMEPPPTLTCDLRPYQKQALFWMSELEKGIDVEKAAQTLHPCWSAYRICDE 494

Query: 182 RAPAIYLNIFSGEMTTKFPTATLMARGGILADAM 283
           RA +IY+NIFSGE TTKFPTAT MARGGILADAM
Sbjct: 495 RATSIYVNIFSGESTTKFPTATQMARGGILADAM 528


>ref|NP_199166.1| Helicase protein with RING/U-box domain [Arabidopsis thaliana]
           gi|60390960|sp|Q9FIY7.1|SM3L3_ARATH RecName:
           Full=Putative SWI/SNF-related matrix-associated
           actin-dependent regulator of chromatin subfamily A
           member 3-like 3; Short=SMARCA3-like protein 3
           gi|10178192|dbj|BAB11616.1| DNA repair protein-like
           [Arabidopsis thaliana] gi|332007595|gb|AED94978.1|
           Helicase protein with RING/U-box domain [Arabidopsis
           thaliana]
          Length = 1277

 Score =  137 bits (344), Expect = 1e-30
 Identities = 63/94 (67%), Positives = 74/94 (78%)
 Frame = +2

Query: 2   GAVDVYDLKEMDPPATLSCDLKPYQKQALYWMTXXXXXXXXXXXXXILHPCWEAYRICDK 181
           GA D Y+L+EM+ P+TL+C+L+PYQKQALYWM+              LHPCWEAYRICD+
Sbjct: 596 GAADSYNLEEMEAPSTLTCNLRPYQKQALYWMSESEKGIDVEKAAETLHPCWEAYRICDE 655

Query: 182 RAPAIYLNIFSGEMTTKFPTATLMARGGILADAM 283
           RAP+IYLNIFSGE T +FPTAT MARGGILADAM
Sbjct: 656 RAPSIYLNIFSGEATIQFPTATQMARGGILADAM 689


>ref|XP_002865418.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]
           gi|297311253|gb|EFH41677.1| SNF2 domain-containing
           protein [Arabidopsis lyrata subsp. lyrata]
          Length = 1305

 Score =  137 bits (344), Expect = 1e-30
 Identities = 63/94 (67%), Positives = 74/94 (78%)
 Frame = +2

Query: 2   GAVDVYDLKEMDPPATLSCDLKPYQKQALYWMTXXXXXXXXXXXXXILHPCWEAYRICDK 181
           GA D Y+L+EM+ P+TL+C+L+PYQKQALYWM+              LHPCWEAYRICD+
Sbjct: 624 GAADSYNLEEMEAPSTLTCNLRPYQKQALYWMSESEKGIDVEKAAETLHPCWEAYRICDE 683

Query: 182 RAPAIYLNIFSGEMTTKFPTATLMARGGILADAM 283
           RAP+IYLNIFSGE T +FPTAT MARGGILADAM
Sbjct: 684 RAPSIYLNIFSGEATIQFPTATQMARGGILADAM 717


>ref|XP_002529311.1| DNA repair helicase rad5,16, putative [Ricinus communis]
           gi|223531235|gb|EEF33080.1| DNA repair helicase rad5,16,
           putative [Ricinus communis]
          Length = 1051

 Score =  133 bits (334), Expect = 2e-29
 Identities = 63/94 (67%), Positives = 70/94 (74%)
 Frame = +2

Query: 2   GAVDVYDLKEMDPPATLSCDLKPYQKQALYWMTXXXXXXXXXXXXXILHPCWEAYRICDK 181
           GAVD Y+L+EM+PP TL C L+ YQKQALYWM+              LHPCW AYRICD 
Sbjct: 386 GAVDTYNLEEMEPPHTLMCSLRSYQKQALYWMSECEKGIDVEKAAKTLHPCWAAYRICDA 445

Query: 182 RAPAIYLNIFSGEMTTKFPTATLMARGGILADAM 283
           RA +IYLNIFSGE TT+FPTAT MARGGILADAM
Sbjct: 446 RASSIYLNIFSGEATTQFPTATQMARGGILADAM 479


>emb|CBI23583.3| unnamed protein product [Vitis vinifera]
          Length = 1287

 Score =  128 bits (322), Expect = 4e-28
 Identities = 60/94 (63%), Positives = 70/94 (74%)
 Frame = +2

Query: 2   GAVDVYDLKEMDPPATLSCDLKPYQKQALYWMTXXXXXXXXXXXXXILHPCWEAYRICDK 181
           GA D Y+L+EM+ P+TL CDL+PYQKQALYWM+              LHPCW AY+ICD+
Sbjct: 540 GAADQYNLEEMESPSTLMCDLRPYQKQALYWMSELEKGSDAEQAPKTLHPCWAAYQICDE 599

Query: 182 RAPAIYLNIFSGEMTTKFPTATLMARGGILADAM 283
           RA AIY+NIFSGE TT+ PTA  MARGGILADAM
Sbjct: 600 RASAIYVNIFSGEATTQLPTAIHMARGGILADAM 633


Top