BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00041461
         (334 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABA95253.1| retrotransposon protein, putative, Ty3-gypsy subc...    73   1e-14
gb|AAX95490.1| Integrase core domain, putative [Oryza sativa Jap...    74   3e-14
gb|ABA93599.1| retrotransposon protein, putative, Ty3-gypsy subc...    71   3e-14
gb|AAM00991.1|AC090482_20 Putative retroelement [Oryza sativa Ja...    72   4e-14
emb|CAE02180.2| OSJNBa0080E14.11 [Oryza sativa Japonica Group]         72   4e-14

>gb|ABA95253.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1032

 Score = 72.8 bits (177), Expect(2) = 1e-14
 Identities = 36/74 (48%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
 Frame = +2

Query: 2    GQVLADFCEKFGIEHRFAPVYYPQANGQVKAMNRIIFKGSKKNILQSDKG-GGSWIEELP 178
            G V  DFCE FGI+  +A V +P +NGQV+  N +I +G K  I    K   G W+E+LP
Sbjct: 821  GGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARIFDRLKPYAGKWVEQLP 880

Query: 179  TVLWSLGSTPNQAT 220
            +VLWSL +TP++AT
Sbjct: 881  SVLWSLRTTPSRAT 894



 Score = 31.6 bits (70), Expect(2) = 1e-14
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +1

Query: 232 FSLVYGTEVVLPAEVGLPTYRQIGFEEENNDQ 327
           F LVYG EV+LP+EV   + R   F EE  ++
Sbjct: 899 FFLVYGAEVMLPSEVEFESLRFRNFREERYEE 930


>gb|AAX95490.1| Integrase core domain, putative [Oryza sativa Japonica Group]
           gi|77550248|gb|ABA93045.1| retrotransposon protein,
           putative, Ty3-gypsy subclass [Oryza sativa Japonica
           Group]
          Length = 914

 Score = 73.9 bits (180), Expect(2) = 3e-14
 Identities = 34/74 (45%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
 Frame = +2

Query: 2   GQVLADFCEKFGIEHRFAPVYYPQANGQVKAMNRIIFKGSKKNILQSDKG-GGSWIEELP 178
           G V  DFCE FGI+  +APV +P +NGQV+  N ++ +G K  +    +   G W+E+LP
Sbjct: 727 GGVFKDFCEDFGIKICYAPVAHPMSNGQVERANGMVLQGIKARVFDRLRPYAGKWVEQLP 786

Query: 179 TVLWSLGSTPNQAT 220
           +VLWSL +TP++AT
Sbjct: 787 SVLWSLRTTPSRAT 800



 Score = 29.3 bits (64), Expect(2) = 3e-14
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +1

Query: 232 FSLVYGTEVVLPAEVGLPTYRQIGFEEE 315
           F LVYG E +LP+EV   + R   F EE
Sbjct: 805 FFLVYGAEAMLPSEVEFESLRFRNFSEE 832


>gb|ABA93599.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1912

 Score = 71.2 bits (173), Expect(2) = 3e-14
 Identities = 34/74 (45%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
 Frame = +2

Query: 2    GQVLADFCEKFGIEHRFAPVYYPQANGQVKAMNRIIFKGSKKNILQSDKG-GGSWIEELP 178
            G V  DFCE FGI+  +A V +P +NGQV+  N +I +G K  +    K   G W+++LP
Sbjct: 1802 GGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARVFDRLKPYAGKWVQQLP 1861

Query: 179  TVLWSLGSTPNQAT 220
            +VLWSL +TP++AT
Sbjct: 1862 SVLWSLRTTPSRAT 1875



 Score = 31.6 bits (70), Expect(2) = 3e-14
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +1

Query: 223  RGSFSLVYGTEVVLPAEVGLPTYRQIGFEEENNDQ 327
            R  F LVYG E +LP+EV   + R   F EE  ++
Sbjct: 1877 RSPFFLVYGAEAMLPSEVEFESLRFRNFREERYEE 1911


>gb|AAM00991.1|AC090482_20 Putative retroelement [Oryza sativa Japonica Group]
          Length = 2017

 Score = 72.4 bits (176), Expect(2) = 4e-14
 Identities = 35/74 (47%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
 Frame = +2

Query: 2    GQVLADFCEKFGIEHRFAPVYYPQANGQVKAMNRIIFKGSKKNILQSDKG-GGSWIEELP 178
            G V  DFCE FGI+  +A V +P +NGQV+  N +I +G K  +    K   G W+E+LP
Sbjct: 1806 GGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARVFDRLKPYAGKWVEQLP 1865

Query: 179  TVLWSLGSTPNQAT 220
            +VLWSL +TP++AT
Sbjct: 1866 SVLWSLRTTPSRAT 1879



 Score = 30.0 bits (66), Expect(2) = 4e-14
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 232  FSLVYGTEVVLPAEVGLPTYRQIGFEEENNDQ 327
            F LVYG E +LP+EV   + R   F EE  ++
Sbjct: 1884 FFLVYGAEAMLPSEVEFESLRFRNFREERYEE 1915


>emb|CAE02180.2| OSJNBa0080E14.11 [Oryza sativa Japonica Group]
          Length = 2001

 Score = 72.4 bits (176), Expect(2) = 4e-14
 Identities = 35/74 (47%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
 Frame = +2

Query: 2    GQVLADFCEKFGIEHRFAPVYYPQANGQVKAMNRIIFKGSKKNILQSDKG-GGSWIEELP 178
            G V  DFCE FGI+  +A V +P +NGQV+  N +I +G K  +    K   G W+E+LP
Sbjct: 1790 GGVFQDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARVFDRLKPYAGKWVEQLP 1849

Query: 179  TVLWSLGSTPNQAT 220
            +VLWSL +TP++AT
Sbjct: 1850 SVLWSLRTTPSRAT 1863



 Score = 30.0 bits (66), Expect(2) = 4e-14
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 232  FSLVYGTEVVLPAEVGLPTYRQIGFEEENNDQ 327
            F LVYG E +LP+EV   + R   F EE  ++
Sbjct: 1868 FFLVYGAEAMLPSEVEFESLRFRNFREERYEE 1899