BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00041100
         (353 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...    72   2e-17
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...    69   8e-16
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]        65   5e-15
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...    75   1e-14
emb|CAB72467.1| putative protein [Arabidopsis thaliana]                68   3e-14

>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 1223

 Score = 71.6 bits (174), Expect(2) = 2e-17
 Identities = 31/68 (45%), Positives = 50/68 (73%)
 Frame = +1

Query: 145 GELPIKYLGIPLITKQLGVTDCRPLMDSIKRKIDV*RNTHLSFAGRLVLINTVVFGKGNY 324
           G+LP++YLG+PLITK+L  TDC PL++ ++++I    +  LS+AGRL LI++V++   N+
Sbjct: 765 GQLPVRYLGLPLITKRLSTTDCLPLLEQVRKRIGSWTSRFLSYAGRLNLISSVLWSICNF 824

Query: 325 WCQSLFLP 348
           W  +  LP
Sbjct: 825 WLAAFRLP 832



 Score = 42.4 bits (98), Expect(2) = 2e-17
 Identities = 17/32 (53%), Positives = 26/32 (81%)
 Frame = +2

Query: 2   VQIVSKALDEFGEWSGLKPNLDKSTMYVAGLS 97
           ++ + K  DEF +WSGL+ +L+KST+Y+AGLS
Sbjct: 718 IERIIKVFDEFAKWSGLRISLEKSTVYLAGLS 749


>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
           72.31) [Arabidopsis thaliana]
          Length = 928

 Score = 69.3 bits (168), Expect(2) = 8e-16
 Identities = 29/69 (42%), Positives = 51/69 (73%)
 Frame = +1

Query: 142 LGELPIKYLGIPLITKQLGVTDCRPLMDSIKRKIDV*RNTHLSFAGRLVLINTVVFGKGN 321
           +G+LP++YLG+PL++K+L  +DC PL++ +++KI+   +  LSFAGRL LI++ ++   N
Sbjct: 652 VGKLPVRYLGLPLVSKRLTASDCLPLIEQLRKKIEAWTSRFLSFAGRLNLISSTLWSICN 711

Query: 322 YWCQSLFLP 348
           +W  +  LP
Sbjct: 712 FWMAAFRLP 720



 Score = 38.9 bits (89), Expect(2) = 8e-16
 Identities = 16/28 (57%), Positives = 23/28 (82%)
 Frame = +2

Query: 11  VSKALDEFGEWSGLKPNLDKSTMYVAGL 94
           + K L EF +WSGLK +++KSTMY+AG+
Sbjct: 609 IVKVLYEFAKWSGLKISMEKSTMYLAGV 636


>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
          Length = 1213

 Score = 65.5 bits (158), Expect(2) = 5e-15
 Identities = 29/69 (42%), Positives = 46/69 (66%)
 Frame = +1

Query: 142 LGELPIKYLGIPLITKQLGVTDCRPLMDSIKRKIDV*RNTHLSFAGRLVLINTVVFGKGN 321
           +G LPI+YLG+PL+ ++L + +  PL++ I  +     N  LSFAGR+ LI++V+FG  N
Sbjct: 757 IGTLPIRYLGLPLMNRKLRIAEYEPLLEKITARFRSWVNKCLSFAGRIQLISSVIFGSIN 816

Query: 322 YWCQSLFLP 348
           +W  +  LP
Sbjct: 817 FWMSTFLLP 825



 Score = 40.0 bits (92), Expect(2) = 5e-15
 Identities = 16/30 (53%), Positives = 23/30 (76%)
 Frame = +2

Query: 11  VSKALDEFGEWSGLKPNLDKSTMYVAGLSR 100
           + + LD+F  WSGLK N DKS +Y+AGL++
Sbjct: 715 ICETLDDFASWSGLKVNKDKSHLYLAGLNQ 744


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1216

 Score = 75.5 bits (184), Expect(2) = 1e-14
 Identities = 35/78 (44%), Positives = 55/78 (70%)
 Frame = +1

Query: 115 LLSKDMRIFLGELPIKYLGIPLITKQLGVTDCRPLMDSIKRKIDV*RNTHLSFAGRLVLI 294
           L+S      +G+LP++YLG+PL+TK+L  +D  PL+D I+R+I +  + +LSFAGRL LI
Sbjct: 476 LMSSRYSFGVGKLPVRYLGLPLVTKRLTTSDYSPLIDQIRRRIGMWTSRYLSFAGRLSLI 535

Query: 295 NTVVFGKGNYWCQSLFLP 348
           N+V++   N+W  +  LP
Sbjct: 536 NSVLWSITNFWMNAFRLP 553



 Score = 28.5 bits (62), Expect(2) = 1e-14
 Identities = 12/29 (41%), Positives = 21/29 (72%)
 Frame = +2

Query: 11  VSKALDEFGEWSGLKPNLDKSTMYVAGLS 97
           + K L++F    GLK  ++K+T+Y+AG+S
Sbjct: 442 IVKVLNQFAAKLGLKICMEKTTLYLAGVS 470


>emb|CAB72467.1| putative protein [Arabidopsis thaliana]
          Length = 762

 Score = 68.2 bits (165), Expect(2) = 3e-14
 Identities = 30/69 (43%), Positives = 48/69 (69%)
 Frame = +1

Query: 142 LGELPIKYLGIPLITKQLGVTDCRPLMDSIKRKIDV*RNTHLSFAGRLVLINTVVFGKGN 321
           +GELPI+YLG+PL+TK+L   D  PL++ I+++I    +  LSFAGR  LI+++++   N
Sbjct: 317 VGELPIRYLGLPLVTKRLSSVDYAPLIEQIRKRIGSWSSRFLSFAGRFNLISSIIWSSCN 376

Query: 322 YWCQSLFLP 348
           +W  +  LP
Sbjct: 377 FWLSAFQLP 385



 Score = 35.0 bits (79), Expect(2) = 3e-14
 Identities = 14/32 (43%), Positives = 24/32 (75%)
 Frame = +2

Query: 2   VQIVSKALDEFGEWSGLKPNLDKSTMYVAGLS 97
           ++ + +  D F +WSGLK +++KST++ AGLS
Sbjct: 271 IEGIIEVFDLFSKWSGLKISMEKSTIFSAGLS 302