BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00040730
         (340 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containi...   142   3e-32
ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containi...   139   2e-31
emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]   139   2e-31
ref|XP_002515835.1| pentatricopeptide repeat-containing protein,...   135   3e-30
ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containi...   134   1e-29

>ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  142 bits (358), Expect = 3e-32
 Identities = 70/114 (61%), Positives = 86/114 (75%), Gaps = 1/114 (0%)
 Frame = +2

Query: 2   GYAQRGMGCQALDIFREMMHSGAEPNVVTLVSVLSGCAVVAALRQGKETHCYSIKRILNV 181
           GYAQRG GC+ALD+FR+M   G+ PNVVTLVS+LS C  V AL  GKETHCY+IK ILN+
Sbjct: 474 GYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGKETHCYAIKFILNL 533

Query: 182 DEYDSG-EYMMVVNGLIDMYAKCKDLDTAQRMFESIEWSSRSGVTGTVMIGGYA 340
           D  D G + + V+NGLIDMYAKC+  + A++MF+S+    R  VT TVMIGGYA
Sbjct: 534 DGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYA 587



 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 43/114 (37%), Positives = 62/114 (54%), Gaps = 2/114 (1%)
 Frame = +2

Query: 2   GYAQRGMGCQALDIFREM--MHSGAEPNVVTLVSVLSGCAVVAALRQGKETHCYSIKRIL 175
           GYAQ G    AL +F  M  M    +PN  TL   L  CA +AALR G++ H Y ++   
Sbjct: 585 GYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALRFGRQVHAYVLR--- 641

Query: 176 NVDEYDSGEYMMVVNGLIDMYAKCKDLDTAQRMFESIEWSSRSGVTGTVMIGGY 337
               +     + V N LIDMY+K  D+DTAQ +F+++    R+ V+ T ++ GY
Sbjct: 642 ---NFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNM--PQRNAVSWTSLMTGY 690



 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 34/104 (32%), Positives = 63/104 (60%), Gaps = 1/104 (0%)
 Frame = +2

Query: 32  ALDIFREMMHSGA-EPNVVTLVSVLSGCAVVAALRQGKETHCYSIKRILNVDEYDSGEYM 208
           AL +F +M       P+V++LV++L  CA +AA  +G++ H +SI+  L VD+      +
Sbjct: 347 ALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRSGL-VDD------V 399

Query: 209 MVVNGLIDMYAKCKDLDTAQRMFESIEWSSRSGVTGTVMIGGYA 340
            V N ++DMYAKC  ++ A ++F+ +++  +  V+   M+ GY+
Sbjct: 400 FVGNAVVDMYAKCGKMEEANKVFQRMKF--KDVVSWNAMVTGYS 441


>ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  139 bits (351), Expect = 2e-31
 Identities = 69/113 (61%), Positives = 86/113 (76%)
 Frame = +2

Query: 2   GYAQRGMGCQALDIFREMMHSGAEPNVVTLVSVLSGCAVVAALRQGKETHCYSIKRILNV 181
           GYAQRG+G +ALD+FR+M   G+EPNVVTLVS+LSGCA+   L  GKETHC++IK ILN+
Sbjct: 341 GYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKETHCHAIKWILNL 400

Query: 182 DEYDSGEYMMVVNGLIDMYAKCKDLDTAQRMFESIEWSSRSGVTGTVMIGGYA 340
           DE D G+ +MV+N LIDMY+KCK    A+ MF+ I    RS VT TV+IGG A
Sbjct: 401 DENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNA 453



 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 39/114 (34%), Positives = 65/114 (57%), Gaps = 2/114 (1%)
 Frame = +2

Query: 2   GYAQRGMGCQALDIFREMMHSG--AEPNVVTLVSVLSGCAVVAALRQGKETHCYSIKRIL 175
           G AQ G   +AL++F +M+       PN  T+   L  CA + ALR G++ H Y ++   
Sbjct: 451 GNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLR--- 507

Query: 176 NVDEYDSGEYMMVVNGLIDMYAKCKDLDTAQRMFESIEWSSRSGVTGTVMIGGY 337
             + ++S   + V N LIDMY+K  D+D A+ +F+++    R+GV+ T ++ GY
Sbjct: 508 --NRFESA-MLFVANCLIDMYSKSGDVDAARVVFDNMH--QRNGVSWTSLMTGY 556



 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 38/113 (33%), Positives = 62/113 (54%), Gaps = 1/113 (0%)
 Frame = +2

Query: 5   YAQRGMGCQALDIFREMMHS-GAEPNVVTLVSVLSGCAVVAALRQGKETHCYSIKRILNV 181
           Y Q G   +A+ +F  M    G  P+ V+LV+VL  CA V A  +GK+ H Y+++  L  
Sbjct: 205 YMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFE 264

Query: 182 DEYDSGEYMMVVNGLIDMYAKCKDLDTAQRMFESIEWSSRSGVTGTVMIGGYA 340
           D       + V N ++DMYAKC  ++ A ++FE ++   +  V+   M+ GY+
Sbjct: 265 D-------VFVGNAVVDMYAKCGMMEEANKVFERMK--VKDVVSWNAMVTGYS 308


>emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  139 bits (351), Expect = 2e-31
 Identities = 69/113 (61%), Positives = 86/113 (76%)
 Frame = +2

Query: 2   GYAQRGMGCQALDIFREMMHSGAEPNVVTLVSVLSGCAVVAALRQGKETHCYSIKRILNV 181
           GYAQRG+G +ALD+FR+M+  G+EPNVVTLVS+LSGCA    L  GKETHC++IK ILN+
Sbjct: 360 GYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNL 419

Query: 182 DEYDSGEYMMVVNGLIDMYAKCKDLDTAQRMFESIEWSSRSGVTGTVMIGGYA 340
           DE D G+ +MV+N LIDMY+KCK    A+ MF+ I    RS VT TV+IGG A
Sbjct: 420 DENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNA 472



 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 39/114 (34%), Positives = 65/114 (57%), Gaps = 2/114 (1%)
 Frame = +2

Query: 2   GYAQRGMGCQALDIFREMMHSG--AEPNVVTLVSVLSGCAVVAALRQGKETHCYSIKRIL 175
           G AQ G   +AL++F +M+       PN  T+   L  CA + ALR G++ H Y ++   
Sbjct: 470 GNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLR--- 526

Query: 176 NVDEYDSGEYMMVVNGLIDMYAKCKDLDTAQRMFESIEWSSRSGVTGTVMIGGY 337
             + ++S   + V N LIDMY+K  D+D A+ +F+++    R+GV+ T ++ GY
Sbjct: 527 --NRFESA-MLFVANCLIDMYSKSGDVDAARVVFDNMH--QRNGVSWTSLMTGY 575



 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 38/113 (33%), Positives = 62/113 (54%), Gaps = 1/113 (0%)
 Frame = +2

Query: 5   YAQRGMGCQALDIFREMMHS-GAEPNVVTLVSVLSGCAVVAALRQGKETHCYSIKRILNV 181
           Y Q G   +A+ +F  M    G  P+ V+LV+VL  CA V A  +GK+ H Y+++  L  
Sbjct: 224 YMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFE 283

Query: 182 DEYDSGEYMMVVNGLIDMYAKCKDLDTAQRMFESIEWSSRSGVTGTVMIGGYA 340
           D       + V N ++DMYAKC  ++ A ++FE ++   +  V+   M+ GY+
Sbjct: 284 D-------VFVGNAVVDMYAKCGMMEEANKVFERMK--VKDVVSWNAMVTGYS 327


>ref|XP_002515835.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223544990|gb|EEF46504.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 655

 Score =  135 bits (341), Expect = 3e-30
 Identities = 66/113 (58%), Positives = 82/113 (72%)
 Frame = +2

Query: 2   GYAQRGMGCQALDIFREMMHSGAEPNVVTLVSVLSGCAVVAALRQGKETHCYSIKRILNV 181
           GYAQRG+G +AL++FR+M   G  PN VTLVS+LSGCA V AL  GKETHCYSIK +LN 
Sbjct: 356 GYAQRGLGYEALNVFRQMQVCGLRPNEVTLVSLLSGCASVGALLHGKETHCYSIKCVLNF 415

Query: 182 DEYDSGEYMMVVNGLIDMYAKCKDLDTAQRMFESIEWSSRSGVTGTVMIGGYA 340
           D  D  + ++VVN +IDMY KCKD++  + +F SI    R+ VT T MIGGYA
Sbjct: 416 DRSDPRDELLVVNAIIDMYTKCKDINVGRAIFNSIPPKDRNVVTWTAMIGGYA 468



 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 41/115 (35%), Positives = 69/115 (60%), Gaps = 3/115 (2%)
 Frame = +2

Query: 2   GYAQRGMGCQALDIFREMM---HSGAEPNVVTLVSVLSGCAVVAALRQGKETHCYSIKRI 172
           GYAQ G    AL++F +M+   +   +PN  T+   L  CA +AALR G++ H + ++  
Sbjct: 466 GYAQHGEANDALELFSQMLKQYNRSVKPNAFTISCALMACARLAALRFGRQIHAFVLR-- 523

Query: 173 LNVDEYDSGEYMMVVNGLIDMYAKCKDLDTAQRMFESIEWSSRSGVTGTVMIGGY 337
              D+YD  + + V N LIDMY+K  D+D A+ +F++++   R+ V+ T ++ GY
Sbjct: 524 ---DQYDC-DVLYVANCLIDMYSKSGDMDAARLVFDNMK--HRNTVSWTSLMTGY 572



 Score = 54.3 bits (129), Expect = 1e-05
 Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 3/115 (2%)
 Frame = +2

Query: 5   YAQRGMGCQALDIFREMMHSGA---EPNVVTLVSVLSGCAVVAALRQGKETHCYSIKRIL 175
           Y Q G     +++FR M   G     P+ V+LV+VL  CA +     GK+ H ++I+   
Sbjct: 218 YLQSGDLKSGIELFRRMWKVGEFDIVPDAVSLVNVLPACASMGDWLCGKQVHGFAIR--- 274

Query: 176 NVDEYDSGEYMMVVNGLIDMYAKCKDLDTAQRMFESIEWSSRSGVTGTVMIGGYA 340
               Y   E + V N L+DMYAKC  +  A ++F+ ++   +  V+   M+ GY+
Sbjct: 275 ----YGLFEDVFVANSLVDMYAKCGLMCIANKVFDRMQ--HKDVVSWNAMVTGYS 323


>ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
           gi|449479088|ref|XP_004155501.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  134 bits (336), Expect = 1e-29
 Identities = 67/113 (59%), Positives = 84/113 (74%)
 Frame = +2

Query: 2   GYAQRGMGCQALDIFREMMHSGAEPNVVTLVSVLSGCAVVAALRQGKETHCYSIKRILNV 181
           GYAQ+G G +ALD+FR+M   G EPNVVTL S+LSGCA V AL  GK+TH Y IK ILN+
Sbjct: 344 GYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAYVIKNILNL 403

Query: 182 DEYDSGEYMMVVNGLIDMYAKCKDLDTAQRMFESIEWSSRSGVTGTVMIGGYA 340
           +  D  + ++V+NGLIDMYAKCK    A+ +F+SIE   ++ VT TVMIGGYA
Sbjct: 404 NWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYA 456



 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 38/114 (33%), Positives = 63/114 (55%), Gaps = 2/114 (1%)
 Frame = +2

Query: 2   GYAQRGMGCQALDIFREMMH--SGAEPNVVTLVSVLSGCAVVAALRQGKETHCYSIKRIL 175
           GYAQ G    AL +F ++    +  +PN  TL   L  CA +  LR G++ H Y+++   
Sbjct: 454 GYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQLHAYALRN-- 511

Query: 176 NVDEYDSGEYMMVVNGLIDMYAKCKDLDTAQRMFESIEWSSRSGVTGTVMIGGY 337
                +  E + V N LIDMY+K  D+D A+ +F++++   R+ V+ T ++ GY
Sbjct: 512 ----ENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMK--LRNVVSWTSLMTGY 559



 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 42/115 (36%), Positives = 64/115 (55%), Gaps = 3/115 (2%)
 Frame = +2

Query: 5   YAQRGMGCQALDI-FREMMHSGAE--PNVVTLVSVLSGCAVVAALRQGKETHCYSIKRIL 175
           Y Q G    AL I FR   H   +  P+ +TLV++L  CA V AL+ GK+ H +S++  L
Sbjct: 206 YVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFSVRNGL 265

Query: 176 NVDEYDSGEYMMVVNGLIDMYAKCKDLDTAQRMFESIEWSSRSGVTGTVMIGGYA 340
            VD+      + V N L+ MYAKC  ++ A ++FE I+   +  V+   M+ GY+
Sbjct: 266 -VDD------VFVGNALVSMYAKCSKMNEANKVFEGIK--KKDVVSWNAMVTGYS 311