BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00040581
         (311 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]                96   3e-18
emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga...    94   1e-17
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...    94   1e-17
emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thal...    92   3e-17
gb|AAC67331.1| putative non-LTR retroelement reverse transcripta...    92   3e-17

>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
          Length = 872

 Score = 95.9 bits (237), Expect = 3e-18
 Identities = 44/99 (44%), Positives = 64/99 (64%)
 Frame = -2

Query: 301 KYITSILVERMKKVLNAVVGKQQTAFIPGSKILDGILLMQELVAGYHQKSGSSRCAIRID 122
           K I+ I+  R+K +L   + + Q+AF+    +++ +LL  ELV  YH+ S S+RCAI+ID
Sbjct: 187 KVISKIIANRLKLLLPRFIAENQSAFVKDRLLIENLLLATELVKDYHKDSISARCAIKID 246

Query: 121 IMKVFDSVNWEFLWTVLHILNFSPIFVNWIRACVSRAWF 5
           I K FDSV W FL   L  +NFSP F++WI  C++ A F
Sbjct: 247 ISKAFDSVQWSFLTNTLVAMNFSPTFIHWINLCITTASF 285


>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1110

 Score = 93.6 bits (231), Expect = 1e-17
 Identities = 45/95 (47%), Positives = 59/95 (62%)
 Frame = -2

Query: 301 KYITSILVERMKKVLNAVVGKQQTAFIPGSKILDGILLMQELVAGYHQKSGSSRCAIRID 122
           K I+ +L  RMK ++  VV + Q+ FIPG  I D ILL  EL+ GY +K  S RC +++D
Sbjct: 525 KIISKMLTNRMKGIIGEVVNEAQSGFIPGRHIADNILLASELIRGYTRKHMSPRCIMKVD 584

Query: 121 IMKVFDSVNWEFLWTVLHILNFSPIFVNWIRACVS 17
           I K +DSV W FL T+L+   F   FV WI  CVS
Sbjct: 585 IRKAYDSVEWSFLETLLYEFGFPSRFVGWIMECVS 619


>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
           72.31) [Arabidopsis thaliana]
          Length = 928

 Score = 93.6 bits (231), Expect = 1e-17
 Identities = 44/99 (44%), Positives = 63/99 (63%)
 Frame = -2

Query: 301 KYITSILVERMKKVLNAVVGKQQTAFIPGSKILDGILLMQELVAGYHQKSGSSRCAIRID 122
           K I+ I+  R+K VL   +   Q+AF+    +++ +LL  E+V  YH+ S SSRCA++ID
Sbjct: 428 KVISKIIANRLKLVLPKFIVGNQSAFVKDRLLIENVLLATEIVKDYHKDSVSSRCALKID 487

Query: 121 IMKVFDSVNWEFLWTVLHILNFSPIFVNWIRACVSRAWF 5
           I K FDSV W+FL  VL  +NF P F +WI  C++ A F
Sbjct: 488 ISKAFDSVQWKFLINVLEAMNFPPEFTHWITLCITTASF 526


>emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thaliana]
           gi|7267919|emb|CAB78261.1| putative reverse
           transcriptase [Arabidopsis thaliana]
          Length = 662

 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 47/99 (47%), Positives = 62/99 (62%)
 Frame = -2

Query: 301 KYITSILVERMKKVLNAVVGKQQTAFIPGSKILDGILLMQELVAGYHQKSGSSRCAIRID 122
           K I+ I+  R+K+VL   +   Q+AFI    +++ +LL  ELV  YH+ S S RCAI+ID
Sbjct: 58  KVISKIIANRLKRVLPQFIAGNQSAFIKDRLLIENLLLATELVKDYHKDSVSERCAIKID 117

Query: 121 IMKVFDSVNWEFLWTVLHILNFSPIFVNWIRACVSRAWF 5
           I K FDSV W FL  VL  L+F   FV+WI  CV+ A F
Sbjct: 118 ISKAFDSVQWSFLRNVLLTLDFPQEFVHWIMLCVTTASF 156


>gb|AAC67331.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1449

 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 45/99 (45%), Positives = 62/99 (62%)
 Frame = -2

Query: 301  KYITSILVERMKKVLNAVVGKQQTAFIPGSKILDGILLMQELVAGYHQKSGSSRCAIRID 122
            K I+ I+  R+K VL   +   Q+AF+    +++ +LL  ELV  YH+ + S RCAI+ID
Sbjct: 955  KVISKIIANRLKHVLPNFIAGNQSAFVKDRLLIENLLLATELVKDYHKDTISGRCAIKID 1014

Query: 121  IMKVFDSVNWEFLWTVLHILNFSPIFVNWIRACVSRAWF 5
            I K FDSV W FL  VL  L+F P FV+W+  CV+ A F
Sbjct: 1015 ISKAFDSVQWSFLKNVLSALDFPPEFVHWVMLCVTTASF 1053