BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00040357
         (346 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002329612.1| predicted protein [Populus trichocarpa] gi|2...    56   1e-06
ref|XP_002313562.1| predicted protein [Populus trichocarpa] gi|2...    56   1e-06
gb|AAC19278.1| T14P8.10 [Arabidopsis thaliana] gi|7269009|emb|CA...    56   2e-06
ref|NP_001031892.1| RNA-directed DNA polymerase (reverse transcr...    52   2e-06
ref|NP_567266.1| RNA-directed DNA polymerase (reverse transcript...    57   2e-06

>ref|XP_002329612.1| predicted protein [Populus trichocarpa] gi|222870351|gb|EEF07482.1|
            predicted protein [Populus trichocarpa]
          Length = 1046

 Score = 56.2 bits (134), Expect(2) = 1e-06
 Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
 Frame = +1

Query: 28   IQNSLPSLQNDS---PDRMQWKDI--NVFKCANCWNEIKSEAAIVSWHNVVWSSCVIPSH 192
            I  ++PS  N      D + W D   + F     W +++    +V WH++VW    +P H
Sbjct: 829  IIEAIPSNSNPKMGQKDEIIWLDSPNHRFSVKVAWEQLRRHRQLVEWHDIVWFKNAVPRH 888

Query: 193  SFITWMVCLHRLNTKDKLKAF 255
            SF+ WMV   +L T+DKL  F
Sbjct: 889  SFLLWMVVQQKLTTQDKLHRF 909



 Score = 21.2 bits (43), Expect(2) = 1e-06
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 297 ETLSHLFFNCVFVQAL 344
           E  +HLFF C + +A+
Sbjct: 925 EDHNHLFFECSYTKAI 940


>ref|XP_002313562.1| predicted protein [Populus trichocarpa] gi|222849970|gb|EEE87517.1|
           predicted protein [Populus trichocarpa]
          Length = 331

 Score = 55.8 bits (133), Expect(2) = 1e-06
 Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
 Frame = +1

Query: 28  IQNSLPSLQNDS---PDRMQWKDI--NVFKCANCWNEIKSEAAIVSWHNVVWSSCVIPSH 192
           I  ++PS  N      D + W D   + F     W +++    +V WH++VW    +P H
Sbjct: 114 IIEAIPSNSNPKMGQKDEIVWLDSPNHRFSVKVAWEQLRRHRHMVEWHDIVWFKNAVPRH 173

Query: 193 SFITWMVCLHRLNTKDKLKAF 255
           SF+ WMV   +L T+DKL  F
Sbjct: 174 SFLLWMVVQQKLTTQDKLHRF 194



 Score = 21.2 bits (43), Expect(2) = 1e-06
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 297 ETLSHLFFNCVFVQAL 344
           E  +HLFF C + +A+
Sbjct: 210 EDHNHLFFECSYTKAI 225


>gb|AAC19278.1| T14P8.10 [Arabidopsis thaliana] gi|7269009|emb|CAB80742.1|
           AT4g02490 [Arabidopsis thaliana]
          Length = 657

 Score = 55.8 bits (133), Expect(2) = 2e-06
 Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 9/96 (9%)
 Frame = +1

Query: 1   RRATPSI*EIQNSLPSLQN----DSPDRMQWK-----DINVFKCANCWNEIKSEAAIVSW 153
           R   P I  +++ LP + N    +  D   WK       + F  A+ W  ++  +  VSW
Sbjct: 523 RSRNPVILLLKSLLPPVGNLVDCEHDDSYLWKVGDRVPSSKFSTADTWRALQPFSVSVSW 582

Query: 154 HNVVWSSCVIPSHSFITWMVCLHRLNTKDKLKAFML 261
           H  VW +  +P H+FI+W+   +RL+T+D+L+++ L
Sbjct: 583 HKAVWFTNQVPKHAFISWVTAWNRLHTRDRLRSWGL 618



 Score = 20.8 bits (42), Expect(2) = 2e-06
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +3

Query: 297 ETLSHLFFNCVF 332
           ET  HLFF C F
Sbjct: 632 ETRDHLFFACRF 643


>ref|NP_001031892.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
           protein [Arabidopsis thaliana]
           gi|98962153|gb|ABF59406.1| unknown protein [Arabidopsis
           thaliana] gi|332004916|gb|AED92299.1| RNA-directed DNA
           polymerase (reverse transcriptase)-related family
           protein [Arabidopsis thaliana]
          Length = 209

 Score = 52.0 bits (123), Expect(2) = 2e-06
 Identities = 34/98 (34%), Positives = 49/98 (50%), Gaps = 11/98 (11%)
 Frame = +1

Query: 1   RRATPSI*EIQNSLP-----SLQNDSPDRM-QWK----DINV-FKCANCWNEIKSEAAIV 147
           R   P I  ++N LP     +LQ D+ D +  WK    + +V F  A  W  +      V
Sbjct: 83  RSRNPIIQLLKNCLPLSSVVNLQVDAEDDLFMWKVGGSEASVGFSSAATWIHLNPVGEKV 142

Query: 148 SWHNVVWSSCVIPSHSFITWMVCLHRLNTKDKLKAFML 261
            WH  +W    IP H+FI+W+   HRL T+DKL ++ L
Sbjct: 143 DWHKAIWFKGRIPKHAFISWVNIRHRLPTRDKLLSWGL 180



 Score = 24.6 bits (52), Expect(2) = 2e-06
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +3

Query: 297 ETLSHLFFNCVF 332
           ET  HLFF+CVF
Sbjct: 194 ETRQHLFFDCVF 205


>ref|NP_567266.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
           protein [Arabidopsis thaliana]
           gi|5732057|gb|AAD48956.1|AF149414_5 contains similarity
           to a family of Arabidopsis thaliana predicted proteins,
           which have similarity to reverse transcriptases; see
           T14P8.10 (GB:AF069298) [Arabidopsis thaliana]
           gi|7267223|emb|CAB80830.1| AT4g04650 [Arabidopsis
           thaliana] gi|332657009|gb|AEE82409.1| RNA-directed DNA
           polymerase (reverse transcriptase)-related family
           protein [Arabidopsis thaliana]
          Length = 332

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
 Frame = +1

Query: 1   RRATPSI*EIQNSLPSLQN----DSPDRMQWKD-----INVFKCANCWNEIKSEAAIVSW 153
           R   P I +++N LP  Q        D   WK       N F     W+ +  ++  V W
Sbjct: 70  RSRNPIIVQLKNLLPEAQGLLDCQHDDSFLWKTDLHAPSNRFSAPRTWSALHPQSHTVPW 129

Query: 154 HNVVWSSCVIPSHSFITWMVCLHRLNTKDKLK 249
           H  VW    +P H+FI W+V  +RL+T+D+L+
Sbjct: 130 HKAVWFKNHVPKHAFICWVVAWNRLHTRDRLQ 161