BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00039940
         (237 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_783263.1| RNA polymerase alpha subunit [Atropa belladonna...   157   8e-37
gb|ADD31219.1| RNA polymerase alpha subunit protein [Nerium olea...   155   2e-36
ref|NP_054532.1| RNA polymerase alpha subunit [Nicotiana tabacum...   155   3e-36
ref|YP_004891639.1| rpoA gene product (chloroplast) [Nicotiana u...   155   3e-36
gb|ADD31214.1| RNA polymerase alpha subunit protein [Ehretia acu...   155   3e-36

>ref|NP_783263.1| RNA polymerase alpha subunit [Atropa belladonna]
           gi|41688712|sp|Q8S8V9.1|RPOA_ATRBE RecName:
           Full=DNA-directed RNA polymerase subunit alpha;
           Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
           subunit alpha; Short=RNA polymerase subunit alpha
           gi|20068363|emb|CAC88076.1| RNA polymerase alpha subunit
           [Atropa belladonna]
          Length = 337

 Score =  157 bits (397), Expect = 8e-37
 Identities = 74/77 (96%), Positives = 76/77 (98%)
 Frame = +2

Query: 5   LQIEKNRGYLIKTPQNFQDGSYPIDAVFLPVRNANHSIHSYGNGNEKQEILFLEIWTNGS 184
           LQIE+NRGYLIKTPQNFQDGSYPIDAVF+PVRNANHSIHSYGNGNEKQEILFLEIWTNGS
Sbjct: 149 LQIERNRGYLIKTPQNFQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGS 208

Query: 185 FTPKEALHEASRNLIDL 235
            TPKEALHEASRNLIDL
Sbjct: 209 LTPKEALHEASRNLIDL 225


>gb|ADD31219.1| RNA polymerase alpha subunit protein [Nerium oleander]
          Length = 337

 Score =  155 bits (393), Expect = 2e-36
 Identities = 73/77 (94%), Positives = 76/77 (98%)
 Frame = +2

Query: 5   LQIEKNRGYLIKTPQNFQDGSYPIDAVFLPVRNANHSIHSYGNGNEKQEILFLEIWTNGS 184
           LQIE+NRGYLI+TPQNFQDGSYPIDAVF+PVRNANHSIHSYGNGNEKQEILFLEIWTNGS
Sbjct: 149 LQIERNRGYLIQTPQNFQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGS 208

Query: 185 FTPKEALHEASRNLIDL 235
            TPKEALHEASRNLIDL
Sbjct: 209 LTPKEALHEASRNLIDL 225


>ref|NP_054532.1| RNA polymerase alpha subunit [Nicotiana tabacum]
           gi|78102570|ref|YP_358710.1| RNA polymerase alpha
           subunit [Nicotiana sylvestris]
           gi|133409|sp|P06269.1|RPOA_TOBAC RecName:
           Full=DNA-directed RNA polymerase subunit alpha;
           Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
           subunit alpha; Short=RNA polymerase subunit alpha
           gi|90110850|sp|Q3C1M3.1|RPOA_NICSY RecName:
           Full=DNA-directed RNA polymerase subunit alpha;
           Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
           subunit alpha; Short=RNA polymerase subunit alpha
           gi|11860|emb|CAA77376.1| RNA polymerase alpha subunit
           [Nicotiana tabacum] gi|10442805|gb|AAG15578.1| RNA
           polymerase alpha subunit [synthetic construct]
           gi|77799597|dbj|BAE46686.1| RNA polymerase alpha subunit
           [Nicotiana sylvestris] gi|225228|prf||1211235BK RNA
           polymerase alpha
          Length = 337

 Score =  155 bits (392), Expect = 3e-36
 Identities = 73/77 (94%), Positives = 75/77 (97%)
 Frame = +2

Query: 5   LQIEKNRGYLIKTPQNFQDGSYPIDAVFLPVRNANHSIHSYGNGNEKQEILFLEIWTNGS 184
           LQIE+NRGYLIKTP NFQDGSYPIDAVF+PVRNANHSIHSYGNGNEKQEILFLEIWTNGS
Sbjct: 149 LQIERNRGYLIKTPHNFQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGS 208

Query: 185 FTPKEALHEASRNLIDL 235
            TPKEALHEASRNLIDL
Sbjct: 209 LTPKEALHEASRNLIDL 225


>ref|YP_004891639.1| rpoA gene product (chloroplast) [Nicotiana undulata]
           gi|347453943|gb|AEO95601.1| RNA polymerase alpha subunit
           (chloroplast) [Nicotiana undulata]
           gi|347454054|gb|AEO95711.1| RNA polymerase alpha subunit
           [synthetic construct]
          Length = 337

 Score =  155 bits (392), Expect = 3e-36
 Identities = 73/77 (94%), Positives = 75/77 (97%)
 Frame = +2

Query: 5   LQIEKNRGYLIKTPQNFQDGSYPIDAVFLPVRNANHSIHSYGNGNEKQEILFLEIWTNGS 184
           LQIE+NRGYLIKTP NFQDGSYPIDAVF+PVRNANHSIHSYGNGNEKQEILFLEIWTNGS
Sbjct: 149 LQIERNRGYLIKTPHNFQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGS 208

Query: 185 FTPKEALHEASRNLIDL 235
            TPKEALHEASRNLIDL
Sbjct: 209 LTPKEALHEASRNLIDL 225


>gb|ADD31214.1| RNA polymerase alpha subunit protein [Ehretia acuminata]
          Length = 339

 Score =  155 bits (392), Expect = 3e-36
 Identities = 73/77 (94%), Positives = 75/77 (97%)
 Frame = +2

Query: 5   LQIEKNRGYLIKTPQNFQDGSYPIDAVFLPVRNANHSIHSYGNGNEKQEILFLEIWTNGS 184
           LQIE+NRGYLIKTP NFQDGSYPIDAVF+PVRNANHSIHSYGNGNEKQEILFLEIWTNGS
Sbjct: 151 LQIERNRGYLIKTPHNFQDGSYPIDAVFMPVRNANHSIHSYGNGNEKQEILFLEIWTNGS 210

Query: 185 FTPKEALHEASRNLIDL 235
            TPKEALHEASRNLIDL
Sbjct: 211 LTPKEALHEASRNLIDL 227