BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00039742
         (483 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AER13153.1| putative gag polyprotein [Phaseolus vulgaris]           85   5e-15
gb|ABA99541.1| retrotransposon protein, putative, unclassified [...    83   2e-14
gb|ABA91954.2| retrotransposon protein, putative, unclassified [...    81   8e-14
gb|ADB85414.1| putative retrotransposon protein [Phyllostachys e...    81   1e-13
gb|AAT93943.1| putative polyprotein [Oryza sativa Japonica Group]      80   2e-13

>gb|AER13153.1| putative gag polyprotein [Phaseolus vulgaris]
          Length = 1153

 Score = 85.1 bits (209), Expect = 5e-15
 Identities = 46/114 (40%), Positives = 73/114 (64%)
 Frame = +2

Query: 92   ALADFVIECTARPPPSVPKQ*ESEISSSNFEWTMHVDGARNDKGARARVLIKGPQGVILE 271
            AL DFV+E T   P    ++ E E      +W + VDGA N KG+ A V+++GP G+++E
Sbjct: 745  ALIDFVVELT---PLEGERKHEGER-----KWILSVDGASNIKGSGAGVILEGPDGILVE 796

Query: 272  YALRFSFPGTNNEAEYEAKIVGLRLVKSLNV*EVLVKGDSKHVIDQI*GSCGVK 433
              L+F+F  +NN+AEYEA + G+RL K ++V  ++V+ DS+ V +Q+ G+   K
Sbjct: 797  QPLQFAFKASNNQAEYEALLAGMRLAKDMSVKNLVVRSDSQLVTEQVAGNFQAK 850


>gb|ABA99541.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1904

 Score = 83.2 bits (204), Expect = 2e-14
 Identities = 46/109 (42%), Positives = 62/109 (56%), Gaps = 2/109 (1%)
 Frame = +2

Query: 92   ALADFVIECTARPPPSVPKQ*ESEISSS--NFEWTMHVDGARNDKGARARVLIKGPQGVI 265
            ALADFV E T  P P    +  S+ S S     W M  DG+ + +GA ARV +  P G +
Sbjct: 1280 ALADFVAEWTPAPEPVSVSEASSDPSQSPHTAHWVMQFDGSLSLQGAGARVTLTSPSGDV 1339

Query: 266  LEYALRFSFPGTNNEAEYEAKIVGLRLVKSLNV*EVLVKGDSKHVIDQI 412
            L Y +R  F  TNN AEYE  + GLR+   L +  +LV GDS+ V++Q+
Sbjct: 1340 LRYLVRLDFQATNNMAEYEGLLAGLRVAAGLGIRRLLVLGDSQLVVNQV 1388


>gb|ABA91954.2| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1759

 Score = 81.3 bits (199), Expect = 8e-14
 Identities = 52/142 (36%), Positives = 75/142 (52%), Gaps = 5/142 (3%)
 Frame = +2

Query: 2    ILVMTDQPLKRVLTSPVGD*QLGL*N*SVHALADFVIECTARPPP-SVPKQ*ESEISSSN 178
            + V+T  PL ++L +  G  ++        ALADFV E T  P P S+P   E+    S 
Sbjct: 1111 VTVVTSYPLGQILHNREGTGRVS------QALADFVAEWTPAPEPVSIP---EASTDPSQ 1161

Query: 179  F----EWTMHVDGARNDKGARARVLIKGPQGVILEYALRFSFPGTNNEAEYEAKIVGLRL 346
                  W M  DG+ + +GA A V +  P G +L Y +R  F  TNN AEYE  + GLR+
Sbjct: 1162 LPHTAHWVMQFDGSLSLQGAGAGVTLTSPSGDVLRYLVRLDFRATNNMAEYEGLLAGLRM 1221

Query: 347  VKSLNV*EVLVKGDSKHVIDQI 412
               L +  +LV GDS+ V++Q+
Sbjct: 1222 AAGLGIRRLLVLGDSQLVVNQV 1243


>gb|ADB85414.1| putative retrotransposon protein [Phyllostachys edulis]
          Length = 1429

 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 43/107 (40%), Positives = 66/107 (61%)
 Frame = +2

Query: 92   ALADFVIECTARPPPSVPKQ*ESEISSSNFEWTMHVDGARNDKGARARVLIKGPQGVILE 271
            A+A+F+ E T   P   P+    E      EWTM+ DG+   KG+ A V++  P G  ++
Sbjct: 1037 AIAEFIAEWTNPEPTQGPEYEHHE------EWTMYFDGSLMLKGSGAGVVLISPTGEHIK 1090

Query: 272  YALRFSFPGTNNEAEYEAKIVGLRLVKSLNV*EVLVKGDSKHVIDQI 412
            YA++ +FP TNN A+YE  + GLR  +SL + ++LVKGDS+ V +Q+
Sbjct: 1091 YAIQLNFPATNNVAKYEGLLAGLRAARSLGIRKLLVKGDSQLVTNQV 1137


>gb|AAT93943.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1575

 Score = 79.7 bits (195), Expect = 2e-13
 Identities = 52/139 (37%), Positives = 77/139 (55%), Gaps = 3/139 (2%)
 Frame = +2

Query: 2    ILVMTDQPLKRVLTSPVGD*QLGL*N*SVHALADFVIECTARPPP-SVPKQ*E--SEISS 172
            + V+T  PL ++L +  G  ++        ALADFV E T  P P SVP+     S++  
Sbjct: 1250 VTVVTSYPLGQILHNREGTGRVS------QALADFVAEWTPAPEPISVPEASSGPSQLPH 1303

Query: 173  SNFEWTMHVDGARNDKGARARVLIKGPQGVILEYALRFSFPGTNNEAEYEAKIVGLRLVK 352
            + + W M  DG+ + +GA A V +  P G +L Y +R  F  TNN AEYE  + GLR+  
Sbjct: 1304 TAY-WVMQFDGSLSLQGAGAGVTLTSPNGDVLRYLVRLDFRATNNMAEYEGLLAGLRVAA 1362

Query: 353  SLNV*EVLVKGDSKHVIDQ 409
             L +  +LV GDS+ V++Q
Sbjct: 1363 RLGIRRLLVLGDSQLVVNQ 1381