BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00039384
         (487 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAG50751.1|AC079733_19 polyprotein, putative [Arabidopsis tha...    83   9e-18
dbj|BAA97099.1| retroelement pol polyprotein-like [Arabidopsis t...    77   9e-18
emb|CAA18107.1| LTR retrotransposon like protein [Arabidopsis th...    83   2e-17
emb|CAN82105.1| hypothetical protein VITISV_002577 [Vitis vinifera]    77   4e-17
dbj|BAB10743.1| retroelement pol polyprotein-like [Arabidopsis t...    81   6e-17

>gb|AAG50751.1|AC079733_19 polyprotein, putative [Arabidopsis thaliana]
          Length = 1468

 Score = 82.8 bits (203), Expect(2) = 9e-18
 Identities = 41/82 (50%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
 Frame = -3

Query: 422 RFGGVCSQGGMLN*PYTPSAVLGDKSPYEVLLGEVPALAHLRVFGCLCFAYNLLCKGDKF 243
           +F G C          TPS +L  KSPYE+L    P  +HLRVFG LC+A+N   KGDKF
Sbjct: 696 QFWGECILSAAYLINRTPSMLLQGKSPYEMLYKTAPKYSHLRVFGSLCYAHNQNHKGDKF 755

Query: 242 APCRRNCVFIGY-HGKKGWKVY 180
           A   R CVF+GY HG+KGW+++
Sbjct: 756 AARSRRCVFVGYPHGQKGWRLF 777



 Score = 32.0 bits (71), Expect(2) = 9e-18
 Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 6/49 (12%)
 Frame = -2

Query: 195 GLEGLRLYDL------VSRDLQFHETEFPFAVVAEASSLVEQPSTVLIE 67
           G +G RL+DL      VSRD+ F ETEFP++ +    S  E+   VL++
Sbjct: 770 GQKGWRLFDLEEQKFFVSRDVIFQETEFPYSKM----SCNEEDERVLVD 814


>dbj|BAA97099.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 1098

 Score = 77.0 bits (188), Expect(2) = 9e-18
 Identities = 35/66 (53%), Positives = 46/66 (69%), Gaps = 1/66 (1%)
 Frame = -3

Query: 374 TPSAVLGDKSPYEVLLGEVPALAHLRVFGCLCFAYNLLCKGDKFAPCRRNCVFIGY-HGK 198
           TP+ +L  KSPYEVL G  P+ + LR FGCLC+A+      DKF+   R CVF+GY +GK
Sbjct: 701 TPTKILHGKSPYEVLFGSRPSYSALRTFGCLCYAHYRARDKDKFSERSRRCVFVGYPYGK 760

Query: 197 KGWKVY 180
           KGW++Y
Sbjct: 761 KGWRLY 766



 Score = 37.7 bits (86), Expect(2) = 9e-18
 Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 15/80 (18%)
 Frame = -2

Query: 195 GLEGLRLYDL------VSRDLQFHETEFPFAVVAEASSL-----VEQPSTVLIEDD---- 61
           G +G RLYDL      VSRD+ F ET FP+  + E+SS+     +  PST+  +DD    
Sbjct: 759 GKKGWRLYDLEKNKFFVSRDVVFQETVFPYGTI-ESSSIPFSPSMFPPSTIFHDDDWLQP 817

Query: 60  EALVSLPAGRDVLDPFPV*T 1
           +A +S+    D+  P  + T
Sbjct: 818 QADISISPTVDLSSPTTIPT 837


>emb|CAA18107.1| LTR retrotransposon like protein [Arabidopsis thaliana]
           gi|7269049|emb|CAB79159.1| LTR retrotransposon like
           protein [Arabidopsis thaliana]
          Length = 1109

 Score = 82.8 bits (203), Expect(2) = 2e-17
 Identities = 41/82 (50%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
 Frame = -3

Query: 422 RFGGVCSQGGMLN*PYTPSAVLGDKSPYEVLLGEVPALAHLRVFGCLCFAYNLLCKGDKF 243
           +F G C          TPS +L  KSPYE+L    P  +HLRVFG LC+A+N   KGDKF
Sbjct: 472 QFWGECILSAAYLINRTPSMLLQGKSPYEMLYKTAPKYSHLRVFGSLCYAHNQNHKGDKF 531

Query: 242 APCRRNCVFIGY-HGKKGWKVY 180
           A   R CVF+GY HG+KGW+++
Sbjct: 532 AARSRRCVFVGYPHGQKGWRLF 553



 Score = 31.2 bits (69), Expect(2) = 2e-17
 Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 6/31 (19%)
 Frame = -2

Query: 195 GLEGLRLYDL------VSRDLQFHETEFPFA 121
           G +G RL+DL      VSRD+ F ETEFP++
Sbjct: 546 GQKGWRLFDLEEQKFFVSRDVIFQETEFPYS 576


>emb|CAN82105.1| hypothetical protein VITISV_002577 [Vitis vinifera]
          Length = 1109

 Score = 77.4 bits (189), Expect(3) = 4e-17
 Identities = 33/66 (50%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
 Frame = -3

Query: 374 TPSAVLGDKSPYEVLLGEVPALAHLRVFGCLCFAYNLLCKGDKFAPCRRNCVFIGY-HGK 198
           TPS  L  K+PYE+L G+ P+  H+  FGCLC+A++     DKFA   R C+F+GY  GK
Sbjct: 521 TPSVFLDGKTPYEILYGQAPSYKHIXTFGCLCYAHDQNRDKDKFASRSRKCIFVGYPFGK 580

Query: 197 KGWKVY 180
           KGW++Y
Sbjct: 581 KGWRLY 586



 Score = 28.1 bits (61), Expect(3) = 4e-17
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
 Frame = -2

Query: 195 GLEGLRLYDL------VSRDLQFHETEFPFAVVAEASSLVEQPSTVLIEDDEALVS 46
           G +G RLYDL      VSR++ F E EF +      SSL E  +   +E+ +  VS
Sbjct: 579 GKKGWRLYDLESGEYFVSRBVIFVEAEFSYFNNVVNSSLTENKND--MEEQQXXVS 632



 Score = 26.9 bits (58), Expect(3) = 4e-17
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -1

Query: 484 IYNLSLECRSRSHVPG*SYIDVLGECVLRVVCLINRTP 371
           I N+    R ++H+P    I+  GECVL    LIN TP
Sbjct: 489 ILNVVRALRFQAHLP----IEFWGECVLIARYLINXTP 522


>dbj|BAB10743.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
          Length = 1109

 Score = 80.9 bits (198), Expect(2) = 6e-17
 Identities = 40/82 (48%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
 Frame = -3

Query: 422 RFGGVCSQGGMLN*PYTPSAVLGDKSPYEVLLGEVPALAHLRVFGCLCFAYNLLCKGDKF 243
           +F G C          TPS +L  KSPYE+L    P  +HLRVFG LC+A+N   KGDKF
Sbjct: 472 QFWGECILSAAYLINRTPSMLLQGKSPYEMLYKTAPNYSHLRVFGSLCYAHNQNHKGDKF 531

Query: 242 APCRRNCVFIGY-HGKKGWKVY 180
               R CVF+GY HG+KGW+++
Sbjct: 532 VARSRRCVFVGYPHGQKGWRLF 553



 Score = 31.2 bits (69), Expect(2) = 6e-17
 Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 6/31 (19%)
 Frame = -2

Query: 195 GLEGLRLYDL------VSRDLQFHETEFPFA 121
           G +G RL+DL      VSRD+ F ETEFP++
Sbjct: 546 GQKGWRLFDLEEQKFFVSRDVIFQETEFPYS 576