BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00039024
         (572 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265420.1| PREDICTED: pentatricopeptide repeat-containi...   250   1e-64
emb|CBI31119.3| unnamed protein product [Vitis vinifera]              250   1e-64
gb|ACP39950.1| pentatricopeptide repeat protein [Gossypium hirsu...   244   6e-63
ref|XP_002327460.1| predicted protein [Populus trichocarpa] gi|2...   241   8e-62
ref|XP_002526196.1| pentatricopeptide repeat-containing protein,...   223   2e-56

>ref|XP_002265420.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 537

 Score =  250 bits (639), Expect = 1e-64
 Identities = 117/190 (61%), Positives = 147/190 (77%)
 Frame = -3

Query: 570 FVKNGLIHFYAGNNRMDFARSFFDECTFRDVVTWSCMINGYLKCGELSLAKELFDQMPEK 391
           FV+NGL+H YA  N MD AR  FD    RDVVTW+ +INGY K G++ +A++LFD+MPEK
Sbjct: 149 FVQNGLLHLYASCNCMDSARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQLFDEMPEK 208

Query: 390 NAVSWSVMINGCSQMGFFNEAREFFVDMMDAGFRPNRAAVVGALTACSFLGNLDQGRWIH 211
           NAVSWS MI G +Q+G F EA E F DM  AGFRPN  A+VGALTAC+FLG LDQGRWIH
Sbjct: 209 NAVSWSAMITGYAQIGLFREALELFNDMQIAGFRPNHGAIVGALTACAFLGALDQGRWIH 268

Query: 210 GYVERSEVELDTVLGTALVDMYAKCGCMDMACHVFEEIPCKDIVAYTSLISGLADHGVGI 31
            YV+R+ + LD +LGTAL+DMYAKCGC++ AC VF+E+  +D+ A+TSLISGLA+HG   
Sbjct: 269 AYVDRNRMVLDRILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLANHGHSA 328

Query: 30  KVLEVFERMK 1
             +E+F RM+
Sbjct: 329 TAIEMFTRMQ 338



 Score = 69.7 bits (169), Expect = 3e-10
 Identities = 40/145 (27%), Positives = 68/145 (46%)
 Frame = -3

Query: 438 GELSLAKELFDQMPEKNAVSWSVMINGCSQMGFFNEAREFFVDMMDAGFRPNRAAVVGAL 259
           G++S A  LF  +P + +  W+ M+   +           +  M+  GF PN       L
Sbjct: 61  GDISHAYLLFLSLPRRTSFIWNTMLRAFTDKKEPATVLSLYKYMLSTGFLPNNYTFSFLL 120

Query: 258 TACSFLGNLDQGRWIHGYVERSEVELDTVLGTALVDMYAKCGCMDMACHVFEEIPCKDIV 79
            AC+ L +L  G  +H    R   E    +   L+ +YA C CMD A  +F+    +D+V
Sbjct: 121 QACAQLSDLSFGILLHAQAVRLGWEAYDFVQNGLLHLYASCNCMDSARRLFDGSVNRDVV 180

Query: 78  AYTSLISGLADHGVGIKVLEVFERM 4
            +T++I+G A  G  +   ++F+ M
Sbjct: 181 TWTAVINGYAKSGQVVVARQLFDEM 205



 Score = 62.8 bits (151), Expect = 4e-08
 Identities = 46/173 (26%), Positives = 79/173 (45%), Gaps = 2/173 (1%)
 Frame = -3

Query: 552 IHFYAGNNRMDFARSFFDECTFRDVVTWSCMINGYLKCGELSLAKELFDQMPEKNAVSWS 373
           IH Y   NRM   R           +  + +I+ Y KCG +  A  +FD+M +++  +++
Sbjct: 267 IHAYVDRNRMVLDR-----------ILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFT 315

Query: 372 VMINGCSQMGFFNEAREFFVDMMDAGFRPNRAAVVGALTACSFLGNLDQG-RWIHGYVER 196
            +I+G +  G    A E F  M + G  PN    +  L+ACS +G +++G R        
Sbjct: 316 SLISGLANHGHSATAIEMFTRMQNEGVCPNEVTFICLLSACSRVGLVEEGLRIFKSMTNI 375

Query: 195 SEVELDTVLGTALVDMYAKCGCMDMACHVFEEIPCK-DIVAYTSLISGLADHG 40
             +E        LVD+  + G ++ A  V  E+P + D     +L++    HG
Sbjct: 376 YGIEPVVQHYGCLVDLLGRAGMLEDAKRVVREMPLEPDSYVLGALLNACRVHG 428


>emb|CBI31119.3| unnamed protein product [Vitis vinifera]
          Length = 512

 Score =  250 bits (639), Expect = 1e-64
 Identities = 117/190 (61%), Positives = 147/190 (77%)
 Frame = -3

Query: 570 FVKNGLIHFYAGNNRMDFARSFFDECTFRDVVTWSCMINGYLKCGELSLAKELFDQMPEK 391
           FV+NGL+H YA  N MD AR  FD    RDVVTW+ +INGY K G++ +A++LFD+MPEK
Sbjct: 124 FVQNGLLHLYASCNCMDSARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQLFDEMPEK 183

Query: 390 NAVSWSVMINGCSQMGFFNEAREFFVDMMDAGFRPNRAAVVGALTACSFLGNLDQGRWIH 211
           NAVSWS MI G +Q+G F EA E F DM  AGFRPN  A+VGALTAC+FLG LDQGRWIH
Sbjct: 184 NAVSWSAMITGYAQIGLFREALELFNDMQIAGFRPNHGAIVGALTACAFLGALDQGRWIH 243

Query: 210 GYVERSEVELDTVLGTALVDMYAKCGCMDMACHVFEEIPCKDIVAYTSLISGLADHGVGI 31
            YV+R+ + LD +LGTAL+DMYAKCGC++ AC VF+E+  +D+ A+TSLISGLA+HG   
Sbjct: 244 AYVDRNRMVLDRILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLANHGHSA 303

Query: 30  KVLEVFERMK 1
             +E+F RM+
Sbjct: 304 TAIEMFTRMQ 313



 Score = 69.7 bits (169), Expect = 3e-10
 Identities = 40/145 (27%), Positives = 68/145 (46%)
 Frame = -3

Query: 438 GELSLAKELFDQMPEKNAVSWSVMINGCSQMGFFNEAREFFVDMMDAGFRPNRAAVVGAL 259
           G++S A  LF  +P + +  W+ M+   +           +  M+  GF PN       L
Sbjct: 36  GDISHAYLLFLSLPRRTSFIWNTMLRAFTDKKEPATVLSLYKYMLSTGFLPNNYTFSFLL 95

Query: 258 TACSFLGNLDQGRWIHGYVERSEVELDTVLGTALVDMYAKCGCMDMACHVFEEIPCKDIV 79
            AC+ L +L  G  +H    R   E    +   L+ +YA C CMD A  +F+    +D+V
Sbjct: 96  QACAQLSDLSFGILLHAQAVRLGWEAYDFVQNGLLHLYASCNCMDSARRLFDGSVNRDVV 155

Query: 78  AYTSLISGLADHGVGIKVLEVFERM 4
            +T++I+G A  G  +   ++F+ M
Sbjct: 156 TWTAVINGYAKSGQVVVARQLFDEM 180



 Score = 62.8 bits (151), Expect = 4e-08
 Identities = 46/173 (26%), Positives = 79/173 (45%), Gaps = 2/173 (1%)
 Frame = -3

Query: 552 IHFYAGNNRMDFARSFFDECTFRDVVTWSCMINGYLKCGELSLAKELFDQMPEKNAVSWS 373
           IH Y   NRM   R           +  + +I+ Y KCG +  A  +FD+M +++  +++
Sbjct: 242 IHAYVDRNRMVLDR-----------ILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFT 290

Query: 372 VMINGCSQMGFFNEAREFFVDMMDAGFRPNRAAVVGALTACSFLGNLDQG-RWIHGYVER 196
            +I+G +  G    A E F  M + G  PN    +  L+ACS +G +++G R        
Sbjct: 291 SLISGLANHGHSATAIEMFTRMQNEGVCPNEVTFICLLSACSRVGLVEEGLRIFKSMTNI 350

Query: 195 SEVELDTVLGTALVDMYAKCGCMDMACHVFEEIPCK-DIVAYTSLISGLADHG 40
             +E        LVD+  + G ++ A  V  E+P + D     +L++    HG
Sbjct: 351 YGIEPVVQHYGCLVDLLGRAGMLEDAKRVVREMPLEPDSYVLGALLNACRVHG 403


>gb|ACP39950.1| pentatricopeptide repeat protein [Gossypium hirsutum]
           gi|227462998|gb|ACP39951.1| pentatricopeptide repeat
           protein [Gossypium hirsutum]
          Length = 532

 Score =  244 bits (624), Expect = 6e-63
 Identities = 115/190 (60%), Positives = 142/190 (74%)
 Frame = -3

Query: 570 FVKNGLIHFYAGNNRMDFARSFFDECTFRDVVTWSCMINGYLKCGELSLAKELFDQMPEK 391
           FV NGLIH YA  + ++ AR  FD  T RDV+TW+ +INGY+K G +  A+ELFDQMPE+
Sbjct: 144 FVLNGLIHLYANWSSVEAARKLFDVSTCRDVITWTALINGYVKSGHVEFARELFDQMPER 203

Query: 390 NAVSWSVMINGCSQMGFFNEAREFFVDMMDAGFRPNRAAVVGALTACSFLGNLDQGRWIH 211
           N VSWS MI G   MG F EA E F D+   G RPN A +VGALTACS+LG+LD GRWIH
Sbjct: 204 NEVSWSAMITGYVHMGMFREALELFNDLQLTGLRPNHAGIVGALTACSYLGSLDHGRWIH 263

Query: 210 GYVERSEVELDTVLGTALVDMYAKCGCMDMACHVFEEIPCKDIVAYTSLISGLADHGVGI 31
            YV+R+  ELD VLGTALVDMYAKCGC+++AC VFE++P KD  A+TSLISGLA+HG   
Sbjct: 264 AYVDRNGTELDRVLGTALVDMYAKCGCIEIACSVFEKMPDKDAFAFTSLISGLANHGQSA 323

Query: 30  KVLEVFERMK 1
             +++F RM+
Sbjct: 324 DAIQLFGRMQ 333



 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 39/150 (26%), Positives = 76/150 (50%), Gaps = 2/150 (1%)
 Frame = -3

Query: 483 DVVTWSCMINGYLKCGELSLAKELFDQMPEKNAVSWSVMINGCSQMGFFNEAREFFVDMM 304
           D V  + +++ Y KCG + +A  +F++MP+K+A +++ +I+G +  G   +A + F  M 
Sbjct: 274 DRVLGTALVDMYAKCGCIEIACSVFEKMPDKDAFAFTSLISGLANHGQSADAIQLFGRMQ 333

Query: 303 DAGFRPNRAAVVGALTACSFLGNLDQGRWIHGYVE-RSEVELDTVLGTALVDMYAKCGCM 127
                PN    +  L+ACS +G +D+G  I   +     +E        +VD+  + G +
Sbjct: 334 SEKVIPNEVTFICVLSACSRMGLVDEGLRIFNCMSVVYGIEPGVQHYGCMVDLLGRAGLL 393

Query: 126 DMACHVFEEIPCK-DIVAYTSLISGLADHG 40
           + A  +  E+P + D     +L++    HG
Sbjct: 394 EEAKRLVREMPMEPDSYVLGALLNSCRVHG 423


>ref|XP_002327460.1| predicted protein [Populus trichocarpa] gi|222836014|gb|EEE74435.1|
           predicted protein [Populus trichocarpa]
          Length = 540

 Score =  241 bits (614), Expect = 8e-62
 Identities = 112/190 (58%), Positives = 145/190 (76%)
 Frame = -3

Query: 570 FVKNGLIHFYAGNNRMDFARSFFDECTFRDVVTWSCMINGYLKCGELSLAKELFDQMPEK 391
           FV+NGLIH YA    MD AR+ FD    RDVVTW+C+I+GYL  G++ +A+ELFD+MPEK
Sbjct: 148 FVQNGLIHLYANCGFMDLARNMFDMSIKRDVVTWTCLISGYLNSGQVLIARELFDRMPEK 207

Query: 390 NAVSWSVMINGCSQMGFFNEAREFFVDMMDAGFRPNRAAVVGALTACSFLGNLDQGRWIH 211
           N VSW  +I G  ++GFF EA E F DM  +GFR NRA++VGALTAC+FLG LDQGRWIH
Sbjct: 208 NPVSWGALIAGYVRIGFFKEALEVFYDMQVSGFRLNRASIVGALTACAFLGALDQGRWIH 267

Query: 210 GYVERSEVELDTVLGTALVDMYAKCGCMDMACHVFEEIPCKDIVAYTSLISGLADHGVGI 31
            YV+R  + LD +LGTAL+DMYAKCGC++MAC VF+E+  +D+ A+T LISGLA+H    
Sbjct: 268 AYVKRHHMSLDRMLGTALIDMYAKCGCIEMACSVFDEMDDRDVYAFTCLISGLANHDKSE 327

Query: 30  KVLEVFERMK 1
             +++F RM+
Sbjct: 328 AAIDLFNRMQ 337



 Score = 69.3 bits (168), Expect = 4e-10
 Identities = 41/143 (28%), Positives = 69/143 (48%)
 Frame = -3

Query: 432 LSLAKELFDQMPEKNAVSWSVMINGCSQMGFFNEAREFFVDMMDAGFRPNRAAVVGALTA 253
           L  A+ LF  +  K+   W+ M+    +      A   +  M+++ + PN       + A
Sbjct: 62  LFYAERLFLCLQNKSTFIWNTMMQAFVEKNEAVRAFSLYKHMLESNYLPNNFTFSFVIRA 121

Query: 252 CSFLGNLDQGRWIHGYVERSEVELDTVLGTALVDMYAKCGCMDMACHVFEEIPCKDIVAY 73
           C  + NL  G   HG V +   E    +   L+ +YA CG MD+A ++F+    +D+V +
Sbjct: 122 CIDVFNLQMGLCFHGQVVKFGWESYDFVQNGLIHLYANCGFMDLARNMFDMSIKRDVVTW 181

Query: 72  TSLISGLADHGVGIKVLEVFERM 4
           T LISG  + G  +   E+F+RM
Sbjct: 182 TCLISGYLNSGQVLIARELFDRM 204



 Score = 63.9 bits (154), Expect = 2e-08
 Identities = 42/150 (28%), Positives = 72/150 (48%), Gaps = 2/150 (1%)
 Frame = -3

Query: 483 DVVTWSCMINGYLKCGELSLAKELFDQMPEKNAVSWSVMINGCSQMGFFNEAREFFVDMM 304
           D +  + +I+ Y KCG + +A  +FD+M +++  +++ +I+G +       A + F  M 
Sbjct: 278 DRMLGTALIDMYAKCGCIEMACSVFDEMDDRDVYAFTCLISGLANHDKSEAAIDLFNRMQ 337

Query: 303 DAGFRPNRAAVVGALTACSFLGNLDQG-RWIHGYVERSEVELDTVLGTALVDMYAKCGCM 127
           D G  PN    V  L ACS +G +D+G R       R  +E        LVD+  + G +
Sbjct: 338 DEGVVPNEVTFVCVLNACSRMGMVDEGLRIFESMSNRYVIEPQIQHYGCLVDLLGRAGKI 397

Query: 126 DMACHVFEEIPCK-DIVAYTSLISGLADHG 40
           + A  V  E+P + D     +L+     HG
Sbjct: 398 EEAKQVVREMPLQPDSYTLGALLDACRVHG 427


>ref|XP_002526196.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223534500|gb|EEF36200.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 491

 Score =  223 bits (567), Expect = 2e-56
 Identities = 101/189 (53%), Positives = 141/189 (74%)
 Frame = -3

Query: 570 FVKNGLIHFYAGNNRMDFARSFFDECTFRDVVTWSCMINGYLKCGELSLAKELFDQMPEK 391
           FV+NGL+H +A    MD AR  FD  + RDV+TW+ +INGY++ G++ + +ELFD+MPE+
Sbjct: 147 FVQNGLVHMFAIFGCMDSARKLFDLSSNRDVITWTALINGYVRAGQVLIGRELFDKMPER 206

Query: 390 NAVSWSVMINGCSQMGFFNEAREFFVDMMDAGFRPNRAAVVGALTACSFLGNLDQGRWIH 211
           N+VSWS MI G  ++GFF EA E F  M+ +GF PN A +V A+ AC+ LG LDQGRWIH
Sbjct: 207 NSVSWSAMITGYVRVGFFEEALELFNAMLISGFWPNHAGIVCAINACASLGALDQGRWIH 266

Query: 210 GYVERSEVELDTVLGTALVDMYAKCGCMDMACHVFEEIPCKDIVAYTSLISGLADHGVGI 31
            Y++R+ ++LD V+G AL+DMYAKCGC+++AC +F E+  +D+  YT LISGLA+HG   
Sbjct: 267 CYIKRNRMDLDRVMGAALIDMYAKCGCIEIACSIFGELRNRDVHVYTCLISGLANHGQSA 326

Query: 30  KVLEVFERM 4
             +E+FERM
Sbjct: 327 TAVELFERM 335



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 1/156 (0%)
 Frame = -3

Query: 552 IHFYAGNNRMDFARSFFDECTFRDVVTWSCMINGYLKCGELSLAKELFDQMPEKNAVSWS 373
           IH Y   NRMD  R           V  + +I+ Y KCG + +A  +F ++  ++   ++
Sbjct: 265 IHCYIKRNRMDLDR-----------VMGAALIDMYAKCGCIEIACSIFGELRNRDVHVYT 313

Query: 372 VMINGCSQMGFFNEAREFFVDMMDAGFRPNRAAVVGALTACSFLGNLDQGRWIHGYVERS 193
            +I+G +  G    A E F  M   G  PN    V  L ACS +G +D+G  I   + + 
Sbjct: 314 CLISGLANHGQSATAVELFERMHSEGVVPNEVTFVSVLNACSRMGLVDKGLRIFENMSKI 373

Query: 192 EVELDTVLG-TALVDMYAKCGCMDMACHVFEEIPCK 88
             +   V     LVD+  + G ++ A  + +E+P K
Sbjct: 374 YGDEPQVQHYGCLVDLLGRAGKLEEAKKLVKEMPMK 409



 Score = 57.8 bits (138), Expect = 1e-06
 Identities = 40/143 (27%), Positives = 67/143 (46%)
 Frame = -3

Query: 432 LSLAKELFDQMPEKNAVSWSVMINGCSQMGFFNEAREFFVDMMDAGFRPNRAAVVGALTA 253
           LS A  LF  +  ++   W+ +I   ++     +A   F +M+ + F PN         A
Sbjct: 61  LSHAYRLFLGLRHRSTFIWNTVIRAFAEKNEPRKAIMLFKNMLYSNFLPNNYTYSFLFKA 120

Query: 252 CSFLGNLDQGRWIHGYVERSEVELDTVLGTALVDMYAKCGCMDMACHVFEEIPCKDIVAY 73
           C+ L NL  G   H    +   E    +   LV M+A  GCMD A  +F+    +D++ +
Sbjct: 121 CTDLNNLYLGLACHCQSIKLGWEFYDFVQNGLVHMFAIFGCMDSARKLFDLSSNRDVITW 180

Query: 72  TSLISGLADHGVGIKVLEVFERM 4
           T+LI+G    G  +   E+F++M
Sbjct: 181 TALINGYVRAGQVLIGRELFDKM 203