BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00039002
         (270 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD17398.1| putative non-LTR retroelement reverse transcripta...    61   6e-13
dbj|BAF01759.1| putative non-LTR retroelement reverse transcript...    61   6e-13
emb|CCA66020.1| hypothetical protein [Beta vulgaris subsp. vulga...    58   1e-11
emb|CCA65995.1| hypothetical protein [Beta vulgaris subsp. vulga...    57   8e-11
gb|AFP55557.1| non-ltr retroelement reverse transcriptase [Rosa ...    55   2e-10

>gb|AAD17398.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1225

 Score = 61.2 bits (147), Expect(2) = 6e-13
 Identities = 28/59 (47%), Positives = 36/59 (61%)
 Frame = -1

Query: 270 FSMTGNKASSPDGMPALFFQHYWPIVEADICKMVLNFLNNSIFLRKFNFTLITLIPKVE 94
           FS+  +KA  PDGM A F+QHYW +   D+ K+V NF +   F  + N T I LIPK E
Sbjct: 385 FSLNPDKAPGPDGMTAFFYQHYWDLTGPDLIKLVQNFHSTGFFDERLNETNICLIPKTE 443



 Score = 37.4 bits (85), Expect(2) = 6e-13
 Identities = 15/30 (50%), Positives = 23/30 (76%)
 Frame = -3

Query: 91  PISMAQFRPFTLCNTVAKIIAKMMALRLKK 2
           P  MA+FRP +LCN   K+I+K+++ RLK+
Sbjct: 445 PRKMAEFRPISLCNVSYKVISKVLSSRLKR 474


>dbj|BAF01759.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 400

 Score = 61.2 bits (147), Expect(2) = 6e-13
 Identities = 28/59 (47%), Positives = 36/59 (61%)
 Frame = -1

Query: 270 FSMTGNKASSPDGMPALFFQHYWPIVEADICKMVLNFLNNSIFLRKFNFTLITLIPKVE 94
           FS+  +KA  PDGM A F+QHYW +   D+ K+V NF +   F  + N T I LIPK E
Sbjct: 19  FSLNPDKAPGPDGMTAFFYQHYWDLTGPDLIKLVQNFHSTGFFDERLNETNICLIPKTE 77



 Score = 37.4 bits (85), Expect(2) = 6e-13
 Identities = 15/30 (50%), Positives = 23/30 (76%)
 Frame = -3

Query: 91  PISMAQFRPFTLCNTVAKIIAKMMALRLKK 2
           P  MA+FRP +LCN   K+I+K+++ RLK+
Sbjct: 79  PRKMAEFRPISLCNVSYKVISKVLSSRLKR 108


>emb|CCA66020.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1365

 Score = 57.8 bits (138), Expect(2) = 1e-11
 Identities = 28/59 (47%), Positives = 37/59 (62%)
 Frame = -1

Query: 270 FSMTGNKASSPDGMPALFFQHYWPIVEADICKMVLNFLNNSIFLRKFNFTLITLIPKVE 94
           F M   KA  PDG+PA+F+Q +W IV  DI + V +F      L+++N T I LIPKVE
Sbjct: 451 FQMGSLKAPGPDGIPAIFYQKHWSIVGEDIWRAVSHFFTTGYILQEWNQTNICLIPKVE 509



 Score = 36.6 bits (83), Expect(2) = 1e-11
 Identities = 16/29 (55%), Positives = 21/29 (72%)
 Frame = -3

Query: 91  PISMAQFRPFTLCNTVAKIIAKMMALRLK 5
           P    QFRP +LCN + KII+K++A RLK
Sbjct: 511 PEQACQFRPISLCNVIYKIISKIIANRLK 539


>emb|CCA65995.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1389

 Score = 56.6 bits (135), Expect(2) = 8e-11
 Identities = 22/59 (37%), Positives = 35/59 (59%)
 Frame = -1

Query: 270 FSMTGNKASSPDGMPALFFQHYWPIVEADICKMVLNFLNNSIFLRKFNFTLITLIPKVE 94
           F +  +K+  PDG P  FFQ YW ++   +C+ V  F ++   L++ N T + LIPKV+
Sbjct: 454 FDLAPDKSPGPDGFPPYFFQKYWTLIGKSVCRAVQAFFHSGYMLKEVNHTFLALIPKVD 512



 Score = 34.7 bits (78), Expect(2) = 8e-11
 Identities = 13/29 (44%), Positives = 22/29 (75%)
 Frame = -3

Query: 91  PISMAQFRPFTLCNTVAKIIAKMMALRLK 5
           P++   FRP +LC+T+ K+I+K++  RLK
Sbjct: 514 PVNANHFRPISLCSTIYKVISKIITNRLK 542


>gb|AFP55557.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
          Length = 1747

 Score = 55.5 bits (132), Expect(2) = 2e-10
 Identities = 26/57 (45%), Positives = 35/57 (61%)
 Frame = -1

Query: 264 MTGNKASSPDGMPALFFQHYWPIVEADICKMVLNFLNNSIFLRKFNFTLITLIPKVE 94
           M  +K+   DGMPA FFQ +W I+  D+  + L FLN    +  FN +LI LIPKV+
Sbjct: 728 MNPSKSPGSDGMPARFFQKFWNIIGNDVVDVCLRFLNGDGSIADFNHSLIALIPKVQ 784



 Score = 34.7 bits (78), Expect(2) = 2e-10
 Identities = 13/29 (44%), Positives = 22/29 (75%)
 Frame = -3

Query: 91  PISMAQFRPFTLCNTVAKIIAKMMALRLK 5
           P  + ++RP +LCN V K+++K++A RLK
Sbjct: 786 PKKVTEYRPISLCNVVYKLVSKVLANRLK 814