BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00038914
         (271 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAA22288.1| polyprotein [Oryza australiensis]                     135   3e-30
gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa...   130   1e-28
gb|ABA97342.2| retrotransposon protein, putative, Ty1-copia subc...   129   2e-28
emb|CAE04999.2| OSJNBb0093G06.7 [Oryza sativa Japonica Group]         128   5e-28
gb|ABF97213.1| retrotransposon protein, putative, Ty1-copia subc...   126   2e-27

>dbj|BAA22288.1| polyprotein [Oryza australiensis]
          Length = 1317

 Score =  135 bits (341), Expect = 3e-30
 Identities = 64/90 (71%), Positives = 73/90 (81%)
 Frame = +1

Query: 1    FKKKHDKDRNVHFFKARLMAKGFKQVHGIDYDETYSPVAMLKSIQIILITTAFHDYEIWQ 180
            FKKK D D NVH +KARL+AKGFKQ+ G+DYDET+SPVAMLKSI+IIL   A+ DYEIWQ
Sbjct: 845  FKKKADMDGNVHIYKARLVAKGFKQIQGVDYDETFSPVAMLKSIRIILAIAAYFDYEIWQ 904

Query: 181  MDVKIAFLNGNLKEDVYIIQLSSFTCPKGP 270
            MDVK AFLNGNL EDVY+IQ   F  P+ P
Sbjct: 905  MDVKTAFLNGNLSEDVYMIQPQGFVDPESP 934


>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
           19.29) [Arabidopsis thaliana] gi|7267136|emb|CAB80804.1|
           putative retrotransposon protein [Arabidopsis thaliana]
          Length = 964

 Score =  130 bits (327), Expect = 1e-28
 Identities = 62/88 (70%), Positives = 72/88 (81%)
 Frame = +1

Query: 1   FKKKHDKDRNVHFFKARLMAKGFKQVHGIDYDETYSPVAMLKSIQIILITTAFHDYEIWQ 180
           FKKK D D N+  +KA L+AKG+KQVHGIDYDETYSPVAMLKSI+I+L T A +DYEIWQ
Sbjct: 492 FKKKIDMDGNIQIYKAGLVAKGYKQVHGIDYDETYSPVAMLKSIRILLATAAHYDYEIWQ 551

Query: 181 MDVKIAFLNGNLKEDVYIIQLSSFTCPK 264
           MDVK AFLNGNL+E VY+ Q   FT P+
Sbjct: 552 MDVKTAFLNGNLEEHVYMTQPEGFTVPE 579


>gb|ABA97342.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1050

 Score =  129 bits (324), Expect = 2e-28
 Identities = 60/88 (68%), Positives = 72/88 (81%)
 Frame = +1

Query: 1   FKKKHDKDRNVHFFKARLMAKGFKQVHGIDYDETYSPVAMLKSIQIILITTAFHDYEIWQ 180
           FKKK D D NVH +KARL+AKGF+Q+ G+DYDET+S VAMLKSIQI+L  TA+ DYEIWQ
Sbjct: 593 FKKKTDVDGNVHIYKARLVAKGFRQIQGVDYDETFSLVAMLKSIQIVLAITAYFDYEIWQ 652

Query: 181 MDVKIAFLNGNLKEDVYIIQLSSFTCPK 264
           MDVK AF+NGN+ EDVY+ QL  F  P+
Sbjct: 653 MDVKTAFVNGNIDEDVYMTQLKGFVDPQ 680


>emb|CAE04999.2| OSJNBb0093G06.7 [Oryza sativa Japonica Group]
          Length = 923

 Score =  128 bits (321), Expect = 5e-28
 Identities = 59/88 (67%), Positives = 72/88 (81%)
 Frame = +1

Query: 1   FKKKHDKDRNVHFFKARLMAKGFKQVHGIDYDETYSPVAMLKSIQIILITTAFHDYEIWQ 180
           FKKK D D NVH +KA+L+AKGF+Q+ G+DYDET+SP+AMLKSI+I+L   A+ DYEIWQ
Sbjct: 728 FKKKIDIDGNVHMYKAQLVAKGFRQIQGVDYDETFSPIAMLKSIRIVLAIAAYFDYEIWQ 787

Query: 181 MDVKIAFLNGNLKEDVYIIQLSSFTCPK 264
           MDVKIAFLNGNL EDVY+ Q   F  P+
Sbjct: 788 MDVKIAFLNGNLDEDVYMTQPKGFVDPQ 815


>gb|ABF97213.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1142

 Score =  126 bits (317), Expect = 2e-27
 Identities = 59/88 (67%), Positives = 70/88 (79%)
 Frame = +1

Query: 1    FKKKHDKDRNVHFFKARLMAKGFKQVHGIDYDETYSPVAMLKSIQIILITTAFHDYEIWQ 180
            FKKK D D NVH +KARL+AKGF+Q+ G+DYDET+ PVAMLKSI+I+L   A+ DYEIWQ
Sbjct: 768  FKKKTDVDGNVHIYKARLVAKGFRQIQGVDYDETFLPVAMLKSIRIVLAIAAYFDYEIWQ 827

Query: 181  MDVKIAFLNGNLKEDVYIIQLSSFTCPK 264
            MDVK AFLNGNL EDVY+ Q   F  P+
Sbjct: 828  MDVKTAFLNGNLDEDVYMTQPKGFVDPQ 855