BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00038844
         (298 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa...   127   1e-27
dbj|BAA22288.1| polyprotein [Oryza australiensis]                     115   4e-24
gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Jap...   112   4e-23
gb|AAM74249.1|AC074355_11 Putative retroelement [Oryza sativa Ja...   110   9e-23
gb|AAP52343.2| retrotransposon protein, putative, Ty1-copia subc...   110   9e-23

>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
           19.29) [Arabidopsis thaliana] gi|7267136|emb|CAB80804.1|
           putative retrotransposon protein [Arabidopsis thaliana]
          Length = 964

 Score =  127 bits (318), Expect = 1e-27
 Identities = 60/97 (61%), Positives = 80/97 (82%)
 Frame = -3

Query: 296 RFDESIKDF*FVRNEEES*IYNKVNGSYVAFILLYVYDILIIGNNVELLNSVKDWLCKCF 117
           RF+E+IK+F F+RNEEE  +Y K +GS VAF++LYV DIL++GN++ LL SVK WL  CF
Sbjct: 604 RFNEAIKEFDFIRNEEEPCVYKKTSGSAVAFLVLYVDDILLLGNDIPLLQSVKTWLGSCF 663

Query: 116 SMKELGEAQYIIGIKIHRD*ANWLIGLCQDSYINKVL 6
           SMK++GEA YI+GI+I+RD  N +IGL QD+YI+KVL
Sbjct: 664 SMKDMGEAAYILGIRIYRDRLNKIIGLSQDTYIDKVL 700


>dbj|BAA22288.1| polyprotein [Oryza australiensis]
          Length = 1317

 Score =  115 bits (288), Expect = 4e-24
 Identities = 57/98 (58%), Positives = 77/98 (78%)
 Frame = -3

Query: 296  RFDESIKDF*FVRNEEES*IYNKVNGSYVAFILLYVYDILIIGNNVELLNSVKDWLCKCF 117
            RFDE IK F F++NEEE+ +Y KV+GS + F++LYV DIL+IGN++ +L SVK  L   F
Sbjct: 957  RFDEVIKGFGFIKNEEEACVYKKVSGSAIVFLILYVDDILLIGNDIPMLESVKSSLKNSF 1016

Query: 116  SMKELGEAQYIIGIKIHRD*ANWLIGLCQDSYINKVLQ 3
            SMK+LGEA YI+GI+I+RD +  LIGL Q +YI+KVL+
Sbjct: 1017 SMKDLGEAAYILGIRIYRDRSKRLIGLSQSTYIDKVLK 1054


>gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Japonica Group]
            gi|62701883|gb|AAX92956.1| retrotransposon protein,
            putative, Ty1-copia sub-class [Oryza sativa Japonica
            Group] gi|108864259|gb|ABA92827.2| retrotransposon
            protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1184

 Score =  112 bits (279), Expect = 4e-23
 Identities = 56/98 (57%), Positives = 75/98 (76%)
 Frame = -3

Query: 296  RFDESIKDF*FVRNEEES*IYNKVNGSYVAFILLYVYDILIIGNNVELLNSVKDWLCKCF 117
            RFDE +K   FVRNEEE  +Y K++GS + F++LYV DIL+IGN++ +L SVK  L   F
Sbjct: 828  RFDEVVKALGFVRNEEEPCVYKKISGSALVFLILYVDDILLIGNDISMLESVKTSLKNSF 887

Query: 116  SMKELGEAQYIIGIKIHRD*ANWLIGLCQDSYINKVLQ 3
            SMK+LGEA YI+GI+I+RD +  LIGL Q +YI+KVL+
Sbjct: 888  SMKDLGEAAYILGIRIYRDRSKRLIGLSQSTYIDKVLK 925


>gb|AAM74249.1|AC074355_11 Putative retroelement [Oryza sativa Japonica Group]
          Length = 700

 Score =  110 bits (276), Expect = 9e-23
 Identities = 56/95 (58%), Positives = 72/95 (75%)
 Frame = -3

Query: 296 RFDESIKDF*FVRNEEES*IYNKVNGSYVAFILLYVYDILIIGNNVELLNSVKDWLCKCF 117
           RFDE IK   FV+NEEE  +Y K+NGS + F++LYV DIL+IGN++ +L SVK  L   F
Sbjct: 511 RFDEVIKALGFVKNEEEPCVYKKINGSALMFLILYVDDILLIGNDIPMLESVKTSLKNSF 570

Query: 116 SMKELGEAQYIIGIKIHRD*ANWLIGLCQDSYINK 12
           SMK+LGEA YI+GI+I+RD +  LIGL Q +YINK
Sbjct: 571 SMKDLGEAAYILGIRIYRDRSKRLIGLSQSTYINK 605


>gb|AAP52343.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 655

 Score =  110 bits (276), Expect = 9e-23
 Identities = 56/95 (58%), Positives = 72/95 (75%)
 Frame = -3

Query: 296 RFDESIKDF*FVRNEEES*IYNKVNGSYVAFILLYVYDILIIGNNVELLNSVKDWLCKCF 117
           RFDE IK   FV+NEEE  +Y K+NGS + F++LYV DIL+IGN++ +L SVK  L   F
Sbjct: 466 RFDEVIKALGFVKNEEEPCVYKKINGSALMFLILYVDDILLIGNDIPMLESVKTSLKNSF 525

Query: 116 SMKELGEAQYIIGIKIHRD*ANWLIGLCQDSYINK 12
           SMK+LGEA YI+GI+I+RD +  LIGL Q +YINK
Sbjct: 526 SMKDLGEAAYILGIRIYRDRSKRLIGLSQSTYINK 560