BLASTX nr result

ID: Lithospermum22_contig00038120 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00038120
         (237 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003632558.1| PREDICTED: probable pre-mRNA-splicing factor...    61   1e-07
ref|XP_002268542.1| PREDICTED: probable pre-mRNA-splicing factor...    61   1e-07
ref|XP_003544395.1| PREDICTED: probable pre-mRNA-splicing factor...    56   3e-06

>ref|XP_003632558.1| PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA
           helicase-like [Vitis vinifera]
          Length = 1172

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 31/57 (54%), Positives = 42/57 (73%), Gaps = 4/57 (7%)
 Frame = -3

Query: 235 IIHAILPPKSKSENDTKR----DEKKAGFSALNIADNKDRVREIEKEIELEMRGKRK 77
           IIHAILPPK KS++   +    D KK+ F AL I D+K+RVRE+E+EIE+E R +R+
Sbjct: 76  IIHAILPPKPKSDDKGMKKDGGDGKKSKFPALGIGDSKERVRELEREIEIESRDRRR 132


>ref|XP_002268542.1| PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA
           helicase-like isoform 2 [Vitis vinifera]
          Length = 1175

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 31/57 (54%), Positives = 42/57 (73%), Gaps = 4/57 (7%)
 Frame = -3

Query: 235 IIHAILPPKSKSENDTKR----DEKKAGFSALNIADNKDRVREIEKEIELEMRGKRK 77
           IIHAILPPK KS++   +    D KK+ F AL I D+K+RVRE+E+EIE+E R +R+
Sbjct: 76  IIHAILPPKPKSDDKGMKKDGGDGKKSKFPALGIGDSKERVRELEREIEIESRDRRR 132


>ref|XP_003544395.1| PREDICTED: probable pre-mRNA-splicing factor ATP-dependent RNA
           helicase-like [Glycine max]
          Length = 1203

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 31/58 (53%), Positives = 41/58 (70%), Gaps = 5/58 (8%)
 Frame = -3

Query: 235 IIHAILPPKSKSENDTKRDE-----KKAGFSALNIADNKDRVREIEKEIELEMRGKRK 77
           IIHAILPPKSK   D+K+++     K   F AL IADN+DR +E++KE+E E R K+K
Sbjct: 76  IIHAILPPKSK---DSKKEKDSVSGKTTKFKALAIADNRDRAKELQKELESEAREKQK 130


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