BLASTX nr result
ID: Lithospermum22_contig00037650
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lithospermum22_contig00037650
(1222 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta... 149 9e-54
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana] 127 2e-48
emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-li... 138 2e-48
dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like ... 138 3e-48
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,... 124 4e-46
>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1216
Score = 149 bits (375), Expect(3) = 9e-54
Identities = 91/270 (33%), Positives = 142/270 (52%), Gaps = 2/270 (0%)
Frame = +2
Query: 2 AVNFYEDLISEKSSLLDKKKWVEL--IVPWKSEQKDYAMLQREVTRDEIEACFMSMKGEK 175
AVN+++D + + + EL ++P++ + D+ +L R VT +EI+ SM +K
Sbjct: 131 AVNYFQDFLQTIPADYEGMCVEELENLLPFRCSEDDHRLLTRVVTGEEIKKVIFSMPKDK 190
Query: 176 PLDLMISPLSFIKMIGVL*GVQLLMLFKLFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 355
F K + G ++++ + F
Sbjct: 191 SPGPDGYTSEFYKASWEIIGDEVIIAIQSFFAKGFLPKGVNSTILALIPKK--------- 241
Query: 356 XQQPKTMRKFRPIACCNVLYKGISTVIASRLKKILNKIVGIQ*SAYVPGRHISDGILLMQ 535
++ + ++ +RPI+CCNVLYK IS ++A+RLK+IL K + SA+V R + + +LL
Sbjct: 242 -KEAREIKDYRPISCCNVLYKAISKILANRLKRILPKFIVGNQSAFVKDRLLIENVLLAT 300
Query: 536 EIVNGYHKRSGRPRCFIKVVVMKAYDSVDWSFLWLMMEKLNFSIVFIAWIKKCVSTAWFS 715
E+V YHK S RC +K+ + KA+DS+ WSFL ++ +NF FI WI C+STA FS
Sbjct: 301 ELVKDYHKDSISTRCAMKIDISKAFDSLQWSFLTHVLAAMNFPGEFIHWISLCMSTASFS 360
Query: 716 INFNGSFTCYFKSARGLRQGDPLSPICLLL 805
I NG YF+SARGLRQG LSP ++
Sbjct: 361 IQVNGELAGYFRSARGLRQGCSLSPYLFVI 390
Score = 65.1 bits (157), Expect(3) = 9e-54
Identities = 31/90 (34%), Positives = 53/90 (58%)
Frame = +1
Query: 778 STIPYLFIIIMDFFDGLMKHFSREKGFDFHPNCQEINLINVCFANDLCILNAVNSRSLNT 957
S PYLF+I MD ++ + + F +HP C+ + L ++CFA+DL IL RS++
Sbjct: 382 SLSPYLFVISMDVLSRMLDKAAGAREFGYHPRCKTLGLTHLCFADDLMILTDGKIRSVDG 441
Query: 958 VKEIVHYFGEITGLKPNLKKISVYFAGNVD 1047
+ ++++ F GLK ++K ++Y AG D
Sbjct: 442 IVKVLNQFAAKLGLKICMEKTTLYLAGVSD 471
Score = 45.1 bits (105), Expect(3) = 9e-54
Identities = 22/55 (40%), Positives = 37/55 (67%)
Frame = +3
Query: 1056 SQQHSWYLGIPKASLPIKYLGIPLNTKQLNARDCRPLVDKIKQKINSRGARQLSY 1220
S ++S+ +G LP++YLG+PL TK+L D PL+D+I+++I +R LS+
Sbjct: 478 SSRYSFGVG----KLPVRYLGLPLVTKRLTTSDYSPLIDQIRRRIGMWTSRYLSF 528
>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
Length = 1213
Score = 127 bits (318), Expect(4) = 2e-48
Identities = 60/147 (40%), Positives = 94/147 (63%)
Frame = +2
Query: 365 PKTMRKFRPIACCNVLYKGISTVIASRLKKILNKIVGIQ*SAYVPGRHISDGILLMQEIV 544
P FRPI+C N LYK I+ ++ RL+++L+ ++ SA++PGR +++ +LL ++V
Sbjct: 517 PTCTSDFRPISCLNTLYKVIARLLTDRLQRLLSGVISSAQSAFLPGRSLAENVLLATDLV 576
Query: 545 NGYHKRSGRPRCFIKVVVMKAYDSVDWSFLWLMMEKLNFSIVFIAWIKKCVSTAWFSINF 724
+GY+ + PR +KV + KA+DSV W F+ + L FI WI +C+ST F+++
Sbjct: 577 HGYNWSNISPRGMLKVDLKKAFDSVRWEFVIAALRALAIPEKFINWISQCISTPTFTVSI 636
Query: 725 NGSFTCYFKSARGLRQGDPLSPICLLL 805
NG +FKS +GLRQGDPLSP +L
Sbjct: 637 NGGNGGFFKSTKGLRQGDPLSPYLFVL 663
Score = 50.1 bits (118), Expect(4) = 2e-48
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Frame = +1
Query: 787 PYLFIIIMDFFDGLMKHFSREKG-FDFHPNCQEINLINVCFANDLCILNAVNSRSLNTVK 963
PYLF++ M+ F L+ H E G +HP +++ ++ FA+D+ I S SL+ +
Sbjct: 658 PYLFVLAMEAFSNLL-HSRYESGLIHYHPKASNLSISHLMFADDVMIFFDGGSFSLHGIC 716
Query: 964 EIVHYFGEITGLKPNLKKISVYFAG 1038
E + F +GLK N K +Y AG
Sbjct: 717 ETLDDFASWSGLKVNKDKSHLYLAG 741
Score = 45.4 bits (106), Expect(4) = 2e-48
Identities = 18/41 (43%), Positives = 27/41 (65%)
Frame = +1
Query: 142 RSLLYEYEGGKALGPDDFSLEFYKDDWSVIGSSVVDAIQAF 264
R+ L+ K+ GPD F+ EF+ D WS++G+ V DAI+ F
Sbjct: 453 RAALFSLPRNKSCGPDGFTAEFFIDSWSIVGAEVTDAIKEF 493
Score = 39.3 bits (90), Expect(4) = 2e-48
Identities = 18/47 (38%), Positives = 29/47 (61%)
Frame = +3
Query: 1080 GIPKASLPIKYLGIPLNTKQLNARDCRPLVDKIKQKINSRGARQLSY 1220
G P +LPI+YLG+PL ++L + PL++KI + S + LS+
Sbjct: 754 GFPIGTLPIRYLGLPLMNRKLRIAEYEPLLEKITARFRSWVNKCLSF 800
>emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 893
Score = 138 bits (348), Expect(4) = 2e-48
Identities = 67/144 (46%), Positives = 97/144 (67%)
Frame = +2
Query: 374 MRKFRPIACCNVLYKGISTVIASRLKKILNKIVGIQ*SAYVPGRHISDGILLMQEIVNGY 553
M FRPI+C N LYK I+ ++ SRLKK+LN+++ SA++PGR +S+ +LL EIV+GY
Sbjct: 521 MTDFRPISCLNTLYKVIAKLLTSRLKKLLNEVISPSQSAFLPGRLLSENVLLATEIVHGY 580
Query: 554 HKRSGRPRCFIKVVVMKAYDSVDWSFLWLMMEKLNFSIVFIAWIKKCVSTAWFSINFNGS 733
+ ++ R +KV + KA+DSV W F+ L F+ WI +C+ST +FS+ NGS
Sbjct: 581 NTKNISSRGMLKVDLRKAFDSVRWDFIISAFRALAVPEKFVCWINQCISTPYFSVMVNGS 640
Query: 734 FTCYFKSARGLRQGDPLSPICLLL 805
+ +FKS +GLRQGDPLSP +L
Sbjct: 641 SSGFFKSNKGLRQGDPLSPYLFVL 664
Score = 52.0 bits (123), Expect(4) = 2e-48
Identities = 27/89 (30%), Positives = 48/89 (53%)
Frame = +1
Query: 787 PYLFIIIMDFFDGLMKHFSREKGFDFHPNCQEINLINVCFANDLCILNAVNSRSLNTVKE 966
PYLF++ M+ F L+K +HP ++++ ++ FA+D+ + S SL+ + E
Sbjct: 659 PYLFVLAMEVFSSLLKARFDAGYIQYHPKTADLSISHLMFADDVMVFFDGGSSSLHGISE 718
Query: 967 IVHYFGEITGLKPNLKKISVYFAGNVDEI 1053
+ F +GL N K ++Y AG DE+
Sbjct: 719 ALDDFASWSGLHVNKDKTNLYLAG-TDEV 746
Score = 40.8 bits (94), Expect(4) = 2e-48
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +1
Query: 118 ERSYKG*D-RSLLYEYEGGKALGPDDFSLEFYKDDWSVIGSSVVDAIQAF 264
ERS+ D + + KA GPD +S EF+K W V+G V +A+Q F
Sbjct: 445 ERSFSDLDIQEAFFSLPRNKASGPDGYSSEFFKGVWFVVGPEVTEAVQEF 494
Score = 30.0 bits (66), Expect(4) = 2e-48
Identities = 11/23 (47%), Positives = 19/23 (82%)
Frame = +3
Query: 1074 YLGIPKASLPIKYLGIPLNTKQL 1142
+ G P ++LPI+YLG+PL +++L
Sbjct: 753 HYGFPISTLPIRYLGLPLMSRKL 775
>dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 893
Score = 138 bits (348), Expect(4) = 3e-48
Identities = 67/144 (46%), Positives = 97/144 (67%)
Frame = +2
Query: 374 MRKFRPIACCNVLYKGISTVIASRLKKILNKIVGIQ*SAYVPGRHISDGILLMQEIVNGY 553
M FRPI+C N LYK I+ ++ SRLKK+LN+++ SA++PGR +S+ +LL EIV+GY
Sbjct: 521 MTDFRPISCLNTLYKVIAKLLTSRLKKLLNEVISPSQSAFLPGRLLSENVLLATEIVHGY 580
Query: 554 HKRSGRPRCFIKVVVMKAYDSVDWSFLWLMMEKLNFSIVFIAWIKKCVSTAWFSINFNGS 733
+ ++ R +KV + KA+DSV W F+ L F+ WI +C+ST +FS+ NGS
Sbjct: 581 NTKNISSRGMLKVDLRKAFDSVRWDFIISAFRALAVPEKFVCWINQCISTPYFSVMVNGS 640
Query: 734 FTCYFKSARGLRQGDPLSPICLLL 805
+ +FKS +GLRQGDPLSP +L
Sbjct: 641 SSGFFKSNKGLRQGDPLSPYLFVL 664
Score = 51.6 bits (122), Expect(4) = 3e-48
Identities = 27/89 (30%), Positives = 48/89 (53%)
Frame = +1
Query: 787 PYLFIIIMDFFDGLMKHFSREKGFDFHPNCQEINLINVCFANDLCILNAVNSRSLNTVKE 966
PYLF++ M+ F L+K +HP ++++ ++ FA+D+ + S SL+ + E
Sbjct: 659 PYLFVLAMEVFSSLLKARFDAGYIHYHPKTADLSISHLMFADDVMVFFDGGSSSLHGISE 718
Query: 967 IVHYFGEITGLKPNLKKISVYFAGNVDEI 1053
+ F +GL N K ++Y AG DE+
Sbjct: 719 ALDDFASWSGLHVNKDKTNLYLAG-TDEV 746
Score = 40.8 bits (94), Expect(4) = 3e-48
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +1
Query: 118 ERSYKG*D-RSLLYEYEGGKALGPDDFSLEFYKDDWSVIGSSVVDAIQAF 264
ERS+ D + + KA GPD +S EF+K W V+G V +A+Q F
Sbjct: 445 ERSFSDLDIQEAFFSLPRNKASGPDGYSSEFFKGVWFVVGPEVTEAVQEF 494
Score = 30.0 bits (66), Expect(4) = 3e-48
Identities = 11/23 (47%), Positives = 19/23 (82%)
Frame = +3
Query: 1074 YLGIPKASLPIKYLGIPLNTKQL 1142
+ G P ++LPI+YLG+PL +++L
Sbjct: 753 HYGFPISTLPIRYLGLPLMSRKL 775
>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
[Arabidopsis thaliana]
Length = 1164
Score = 124 bits (311), Expect(4) = 4e-46
Identities = 62/145 (42%), Positives = 90/145 (62%)
Frame = +2
Query: 371 TMRKFRPIACCNVLYKGISTVIASRLKKILNKIVGIQ*SAYVPGRHISDGILLMQEIVNG 550
+M FRPI+C N +YK IS ++ RLK L + SA++PGR + +LL E+V+G
Sbjct: 416 SMSDFRPISCLNTVYKVISKLLTDRLKDFLPAAISHSQSAFMPGRLFLENVLLATELVHG 475
Query: 551 YHKRSGRPRCFIKVVVMKAYDSVDWSFLWLMMEKLNFSIVFIAWIKKCVSTAWFSINFNG 730
Y+K++ P +KV + KA+DSV W F+ + LN F WI +C+STA FS+ NG
Sbjct: 476 YNKKNIAPSSMLKVDLRKAFDSVRWDFIVSALRALNVPEKFTCWILECLSTASFSVILNG 535
Query: 731 SFTCYFKSARGLRQGDPLSPICLLL 805
+F S++GLRQGDP+SP +L
Sbjct: 536 HSAGHFWSSKGLRQGDPMSPYLFVL 560
Score = 50.8 bits (120), Expect(4) = 4e-46
Identities = 26/84 (30%), Positives = 44/84 (52%)
Frame = +1
Query: 787 PYLFIIIMDFFDGLMKHFSREKGFDFHPNCQEINLINVCFANDLCILNAVNSRSLNTVKE 966
PYLF++ M+ F GL++ +HP ++ + ++ FA+D+ I S SL+ + E
Sbjct: 555 PYLFVLAMEVFSGLLQSRYTSGYIAYHPKTSQLEISHLMFADDVMIFFDGKSSSLHGIVE 614
Query: 967 IVHYFGEITGLKPNLKKISVYFAG 1038
+ F +GL N K +Y AG
Sbjct: 615 SLEDFAGWSGLLMNTNKTQLYHAG 638
Score = 42.7 bits (99), Expect(4) = 4e-46
Identities = 19/47 (40%), Positives = 30/47 (63%)
Frame = +3
Query: 1080 GIPKASLPIKYLGIPLNTKQLNARDCRPLVDKIKQKINSRGARQLSY 1220
G SLP++YLG+PL +++L + PL++KI + NS R LS+
Sbjct: 651 GFKLGSLPVRYLGLPLMSRKLTIAEYAPLIEKITARFNSWVVRLLSF 697
Score = 35.8 bits (81), Expect(4) = 4e-46
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +1
Query: 142 RSLLYEYEGGKALGPDDFSLEFYKDDWSVIGSSVVDAIQAF 264
++ + KA GPD FS EF+ W +IG V +AI F
Sbjct: 350 KNAFFSLPRNKASGPDGFSPEFFCACWPIIGGEVTEAIHEF 390