BLASTX nr result

ID: Lithospermum22_contig00037028 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00037028
         (498 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002514929.1| GTP binding protein, putative [Ricinus commu...    98   8e-19
ref|XP_004144195.1| PREDICTED: putative ribosome biogenesis GTPa...    75   4e-12
ref|XP_003538555.1| PREDICTED: putative ribosome biogenesis GTPa...    72   6e-11
ref|XP_003551427.1| PREDICTED: putative ribosome biogenesis GTPa...    69   3e-10
gb|AFK47688.1| unknown [Medicago truncatula]                           68   9e-10

>ref|XP_002514929.1| GTP binding protein, putative [Ricinus communis]
           gi|223545980|gb|EEF47483.1| GTP binding protein,
           putative [Ricinus communis]
          Length = 500

 Score = 97.8 bits (242), Expect = 8e-19
 Identities = 60/123 (48%), Positives = 75/123 (60%), Gaps = 11/123 (8%)
 Frame = -2

Query: 377 MPITSISLLRFKPPPPFSSTFRCCFFTISAASSRQNPSTSSRKLPHQQQQ---------- 228
           MPI SISL R++ P  F         TIS    R  P T S++   QQQQ          
Sbjct: 1   MPIASISLFRYRTPTTFHHHHLLRHITIS----RHLPITVSKQQQQQQQQKNPNNISRKP 56

Query: 227 -QPSKNLLKARDTVKKHLSSLAPILSPDEKVKLASNQAVGLVSASQANFMRVVIQSPPQA 51
            QP+K +LKAR T+ K  SSL+PILSPD K  L+ +QAVG V+A+QANFMRV+IQS P +
Sbjct: 57  QQPNKYILKARQTLVKEYSSLSPILSPDTKPNLSDSQAVGTVAAAQANFMRVIIQSLPPS 116

Query: 50  NGT 42
           +GT
Sbjct: 117 SGT 119


>ref|XP_004144195.1| PREDICTED: putative ribosome biogenesis GTPase RsgA-like [Cucumis
           sativus] gi|449489232|ref|XP_004158254.1| PREDICTED:
           putative ribosome biogenesis GTPase RsgA-like [Cucumis
           sativus]
          Length = 504

 Score = 75.5 bits (184), Expect = 4e-12
 Identities = 53/135 (39%), Positives = 75/135 (55%), Gaps = 10/135 (7%)
 Frame = -2

Query: 377 MPITSISLLRFKPP--------PPFSSTFRCCFF--TISAASSRQNPSTSSRKLPHQQQQ 228
           M I SIS+LR            P F +  R  F     S  + + NP+  S K P     
Sbjct: 1   MAIASISMLRHHTAAIAATSSIPVFGNVLRRVFNFRCFSIVAKQHNPNNVSNKPP----- 55

Query: 227 QPSKNLLKARDTVKKHLSSLAPILSPDEKVKLASNQAVGLVSASQANFMRVVIQSPPQAN 48
            PSKNLL+A+ T K + SSLAP+LSP +   L+ +QA+G V+A+QANFMRV++Q+ P   
Sbjct: 56  -PSKNLLRAKHTFKDY-SSLAPVLSPQDNPPLSESQAIGTVAAAQANFMRVIVQTLP--- 110

Query: 47  GTQFDEFVDLEASRS 3
            +QF +  + +  RS
Sbjct: 111 -SQFSQSPNDDLERS 124


>ref|XP_003538555.1| PREDICTED: putative ribosome biogenesis GTPase RsgA-like [Glycine
           max]
          Length = 475

 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 44/114 (38%), Positives = 71/114 (62%), Gaps = 5/114 (4%)
 Frame = -2

Query: 368 TSISLLRFKPPPPFSST-----FRCCFFTISAASSRQNPSTSSRKLPHQQQQQPSKNLLK 204
           +S S+LR +    ++ T     FRC   TI+A   +Q  +      P++Q   PS+NLLK
Sbjct: 5   SSFSMLRHRAVAAYAPTLLLRRFRC-LPTIAARHQQQQQN------PNKQAAAPSRNLLK 57

Query: 203 ARDTVKKHLSSLAPILSPDEKVKLASNQAVGLVSASQANFMRVVIQSPPQANGT 42
           A+ T+K++ S LAP+LS ++   L  +QA+G+V+ASQANFMRV++    + +G+
Sbjct: 58  AKQTLKEY-SCLAPVLSLEDSPPLTESQAIGVVAASQANFMRVIVPENDEPSGS 110


>ref|XP_003551427.1| PREDICTED: putative ribosome biogenesis GTPase RsgA-like [Glycine
           max]
          Length = 473

 Score = 69.3 bits (168), Expect = 3e-10
 Identities = 45/114 (39%), Positives = 67/114 (58%), Gaps = 5/114 (4%)
 Frame = -2

Query: 368 TSISLLRFKP-----PPPFSSTFRCCFFTISAASSRQNPSTSSRKLPHQQQQQPSKNLLK 204
           +S S+LR +      P      FRC    I+A   +QNP+         +Q  PS+NLLK
Sbjct: 5   SSFSMLRHRAAASAAPLLLLRRFRC--LRIAARHQQQNPN---------KQAPPSRNLLK 53

Query: 203 ARDTVKKHLSSLAPILSPDEKVKLASNQAVGLVSASQANFMRVVIQSPPQANGT 42
           A+ T+K+  SSLAP+LS +    L  +QA+G+V+ASQANFMRV++    + +G+
Sbjct: 54  AKQTLKE-FSSLAPVLSLEASPPLTESQAIGVVAASQANFMRVIVPENDEPSGS 106


>gb|AFK47688.1| unknown [Medicago truncatula]
          Length = 217

 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 46/107 (42%), Positives = 65/107 (60%)
 Frame = -2

Query: 377 MPITSISLLRFKPPPPFSSTFRCCFFTISAASSRQNPSTSSRKLPHQQQQQPSKNLLKAR 198
           M + S S++R +     ++      F ISA +  QNP          + + PSKNLLKA+
Sbjct: 1   MSLASFSIIRHQRTVATAAPRLLHHFQISARN--QNP----------KHEAPSKNLLKAK 48

Query: 197 DTVKKHLSSLAPILSPDEKVKLASNQAVGLVSASQANFMRVVIQSPP 57
            T+K   SSLA ILS +E   L+ +QAVG+V++SQANFMRV++QS P
Sbjct: 49  RTLKD-FSSLALILSREETPPLSESQAVGVVASSQANFMRVIVQSQP 94


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