BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00036399
         (403 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thal...    47   2e-13
dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like ...    46   2e-13
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...    46   2e-12
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]                44   2e-11
emb|CAB10226.1| reverse transcriptase like protein [Arabidopsis ...    48   3e-10

>emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thaliana]
           gi|7267919|emb|CAB78261.1| putative reverse
           transcriptase [Arabidopsis thaliana]
          Length = 662

 Score = 47.0 bits (110), Expect(3) = 2e-13
 Identities = 24/45 (53%), Positives = 30/45 (66%), Gaps = 3/45 (6%)
 Frame = -1

Query: 268 GDHLSSYLFILVMDYFTKML*RQ---RSFEYHP*CKEIGLTNLSF 143
           G  L+ YLF++VMD  +K L R    R F YHP CK +GLT+LSF
Sbjct: 177 GCSLTPYLFVIVMDVLSKKLDRAAGLRKFGYHPKCKNLGLTHLSF 221



 Score = 42.4 bits (98), Expect(3) = 2e-13
 Identities = 22/50 (44%), Positives = 29/50 (58%)
 Frame = -2

Query: 399 VMRALNYLIRFIELVKASVTTA*FFVSINRILQGHFNCSRGLRQGTISPP 250
           V+  L++   F+  +   VTTA F V +NR L G+FN  RGLRQG    P
Sbjct: 133 VLLTLDFPQEFVHWIMLCVTTASFSVQVNRELAGYFNSLRGLRQGCSLTP 182



 Score = 30.8 bits (68), Expect(3) = 2e-13
 Identities = 15/45 (33%), Positives = 28/45 (62%)
 Frame = -3

Query: 143 SDDLFVLSSTSIKFMQLIKDVL*SFGEISRLHPNLNKSSCYFVGI 9
           +DD+ VL+   ++ ++ I +V  SF + S L  ++ K++ YF GI
Sbjct: 222 ADDIMVLTDGKLRSLEGIVEVFDSFAKQSGLKISMAKTTIYFAGI 266


>dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 489

 Score = 45.8 bits (107), Expect(3) = 2e-13
 Identities = 23/45 (51%), Positives = 32/45 (71%), Gaps = 3/45 (6%)
 Frame = -1

Query: 268 GDHLSSYLFILVMDYFTKML*R---QRSFEYHP*CKEIGLTNLSF 143
           G  LS YLF++ M+  +K+L +   QR F YHP CK++GLT+LSF
Sbjct: 41  GCSLSPYLFVVSMNVLSKLLDKATGQRRFGYHPRCKQMGLTHLSF 85



 Score = 40.0 bits (92), Expect(3) = 2e-13
 Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
 Frame = -2

Query: 369 FIELVKASVTTA*FFVSINRILQGHFNCSRGLRQG-TISP 253
           FI  +   VTTA F V +N  L G+FN +RGLRQG ++SP
Sbjct: 7   FIHWIMLCVTTASFLVQVNGELAGYFNSTRGLRQGCSLSP 46



 Score = 33.9 bits (76), Expect(3) = 2e-13
 Identities = 16/45 (35%), Positives = 28/45 (62%)
 Frame = -3

Query: 143 SDDLFVLSSTSIKFMQLIKDVL*SFGEISRLHPNLNKSSCYFVGI 9
           +DDL VLS   ++ ++ I +V  +F + S L  ++ KS+ YF G+
Sbjct: 86  ADDLMVLSDGKVRSIEGIVEVFETFAKCSGLRISMEKSTVYFAGL 130


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 1223

 Score = 45.8 bits (107), Expect(3) = 2e-12
 Identities = 24/45 (53%), Positives = 30/45 (66%), Gaps = 3/45 (6%)
 Frame = -1

Query: 268 GDHLSSYLFILVMDYFTKML*RQ---RSFEYHP*CKEIGLTNLSF 143
           G  LS YLF++ MD  +KML +    R F YHP CK +GLT+LSF
Sbjct: 659 GCALSPYLFVICMDVLSKMLDKAAAARHFGYHPKCKTMGLTHLSF 703



 Score = 39.3 bits (90), Expect(3) = 2e-12
 Identities = 21/50 (42%), Positives = 26/50 (52%)
 Frame = -2

Query: 399 VMRALNYLIRFIELVKASVTTA*FFVSINRILQGHFNCSRGLRQGTISPP 250
           V   L +   FI  +   +TTA F V +N  L G+F  SRGLRQG    P
Sbjct: 615 VFTILGFPREFIHWINICITTASFSVQVNGELAGYFQSSRGLRQGCALSP 664



 Score = 30.8 bits (68), Expect(3) = 2e-12
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -3

Query: 143 SDDLFVLSSTSIKFMQLIKDVL*SFGEISRLHPNLNKSSCYFVGI 9
           +DDL VLS   I+ ++ I  V   F + S L  +L KS+ Y  G+
Sbjct: 704 ADDLMVLSDGKIRSIERIIKVFDEFAKWSGLRISLEKSTVYLAGL 748


>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
          Length = 872

 Score = 44.3 bits (103), Expect(3) = 2e-11
 Identities = 22/45 (48%), Positives = 30/45 (66%), Gaps = 3/45 (6%)
 Frame = -1

Query: 268 GDHLSSYLFILVMDYFTKML*RQ---RSFEYHP*CKEIGLTNLSF 143
           G  LS YLF++ MD  +KML +    R F +HP C+ +GLT+LSF
Sbjct: 306 GCSLSPYLFVICMDVLSKMLDKAAGVRKFGFHPKCQRLGLTHLSF 350



 Score = 39.7 bits (91), Expect(3) = 2e-11
 Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
 Frame = -2

Query: 390 ALNYLIRFIELVKASVTTA*FFVSINRILQGHFNCSRGLRQG-TISP 253
           A+N+   FI  +   +TTA F V +N  L G+F   RGLRQG ++SP
Sbjct: 265 AMNFSPTFIHWINLCITTASFSVQVNGDLVGYFQSKRGLRQGCSLSP 311



 Score = 28.9 bits (63), Expect(3) = 2e-11
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = -3

Query: 143 SDDLFVLSSTSIKFMQLIKDVL*SFGEISRLHPNLNKSSCYFVGI 9
           +DDL VLS    + ++ I +V   F + S L  +L KS+ Y  G+
Sbjct: 351 ADDLMVLSDGKTRSIEGILEVFDEFCKRSGLRISLEKSTLYMAGV 395


>emb|CAB10226.1| reverse transcriptase like protein [Arabidopsis thaliana]
           gi|7268153|emb|CAB78489.1| reverse transcriptase like
           protein [Arabidopsis thaliana]
          Length = 318

 Score = 48.1 bits (113), Expect(2) = 3e-10
 Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 3/45 (6%)
 Frame = -1

Query: 268 GDHLSSYLFILVMDYFTKML*RQ---RSFEYHP*CKEIGLTNLSF 143
           G  LS YLF++VMD  +K L R    R F YHP CK +GLT+LSF
Sbjct: 95  GCSLSPYLFVIVMDVLSKKLDRAAGLRKFGYHPKCKNLGLTHLSF 139



 Score = 41.2 bits (95), Expect(2) = 3e-10
 Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
 Frame = -2

Query: 399 VMRALNYLIRFIELVKASVTTA*FFVSINRILQGHFNCSRGLRQG-TISP 253
           V+  L++   F+  +   VTTA F V +N  L G+FN SRGLRQG ++SP
Sbjct: 51  VLLTLDFPQVFVHWIMLCVTTASFSVQVNGELAGYFNSSRGLRQGCSLSP 100