BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00035658
         (488 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003637117.1| Pentatricopeptide repeat-containing protein,...   203   1e-50
ref|XP_002521241.1| pentatricopeptide repeat-containing protein,...   197   6e-49
emb|CBI37820.3| unnamed protein product [Vitis vinifera]              197   7e-49
ref|XP_002278375.1| PREDICTED: pentatricopeptide repeat-containi...   197   7e-49
emb|CAN67319.1| hypothetical protein VITISV_039344 [Vitis vinifera]   197   7e-49

>ref|XP_003637117.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula] gi|355503052|gb|AES84255.1|
           Pentatricopeptide repeat-containing protein, partial
           [Medicago truncatula]
          Length = 592

 Score =  203 bits (517), Expect = 1e-50
 Identities = 103/162 (63%), Positives = 126/162 (77%)
 Frame = +1

Query: 1   ASLCALVSGLVRNGKLDDAEELLVKYGKINDGRIDLVFAYNTLIAGYGQKGRINDARRLF 180
           ASL  LVSGLVRNGKLD A E+LV+YG   D + DLV+AYNTLIAGYGQ+G + +AR +F
Sbjct: 197 ASLSGLVSGLVRNGKLDMAAEILVEYGNEGDEKDDLVYAYNTLIAGYGQRGMVEEARHVF 256

Query: 181 DQVFYDADDPRMSGGSIIRLKRNVISWNTMIMCFVKAGEVVSARELFDKMKERDAFTWNT 360
           D V  D  +         RLKRNV+SWN+M+MC+VKAG+VVSARELFD+M ERDA +WNT
Sbjct: 257 DGVMSDQGEGNEGKR---RLKRNVVSWNSMMMCYVKAGDVVSARELFDRMVERDACSWNT 313

Query: 361 MISGYVGMLDMEEASKLFSEMPNPDTVTWNSIISGHAHLGNL 486
           +I GYV + DMEEASKLF EMP PD ++WNSIISG + +G+L
Sbjct: 314 VIGGYVQIGDMEEASKLFLEMPIPDVLSWNSIISGFSQIGDL 355



 Score = 87.8 bits (216), Expect = 8e-16
 Identities = 51/138 (36%), Positives = 73/138 (52%), Gaps = 3/138 (2%)
 Frame = +1

Query: 82  KINDGRIDLVFAYNTLIAGYGQKGRINDARRLFDQVFYDADDPRMSGGSIIRLKRNVISW 261
           K ND     ++  N  I+   + GR+  AR LFD   +                RN ++W
Sbjct: 29  KTNDTIPQSLYQLNKKISHLIRTGRLTAARTLFDSTNH----------------RNTVTW 72

Query: 262 NTMIMCFVKAGEVVSARELFDKMKERDAFTWNTMISGYV---GMLDMEEASKLFSEMPNP 432
           N+MI  +V+  E+  AR+LFD+M  RD  +WN +ISGY    G   +EE  KLF  MP  
Sbjct: 73  NSMITGYVQRREIAKARQLFDEMPLRDIVSWNLIISGYFSCRGSRFVEEGRKLFDIMPQR 132

Query: 433 DTVTWNSIISGHAHLGNL 486
           D V+WN++ISG+A  G +
Sbjct: 133 DCVSWNTVISGYAKNGRM 150



 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 46/174 (26%), Positives = 83/174 (47%), Gaps = 18/174 (10%)
 Frame = +1

Query: 19  VSGLVRNGKLDDAEELLVKYGKINDGRIDLVFAYNTLIAGYGQKGRINDARRLFDQV--- 189
           +S L+R G+L  A  L       N         +N++I GY Q+  I  AR+LFD++   
Sbjct: 45  ISHLIRTGRLTAARTLFDSTNHRN------TVTWNSMITGYVQRREIAKARQLFDEMPLR 98

Query: 190 -----------FYDADDPRM--SGGSIIRL--KRNVISWNTMIMCFVKAGEVVSARELFD 324
                      ++     R    G  +  +  +R+ +SWNT+I  + K G +  A E+F+
Sbjct: 99  DIVSWNLIISGYFSCRGSRFVEEGRKLFDIMPQRDCVSWNTVISGYAKNGRMDQAIEIFE 158

Query: 325 KMKERDAFTWNTMISGYVGMLDMEEASKLFSEMPNPDTVTWNSIISGHAHLGNL 486
            M ER+  + N +++G++   D++ A   F +M   D+ + + ++SG    G L
Sbjct: 159 SMPERNVVSCNAVVNGFLLNGDVDSAVGFFRKMGERDSASLSGLVSGLVRNGKL 212


>ref|XP_002521241.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223539509|gb|EEF41097.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 662

 Score =  197 bits (502), Expect = 6e-49
 Identities = 96/162 (59%), Positives = 129/162 (79%), Gaps = 1/162 (0%)
 Frame = +1

Query: 4   SLCALVSGLVRNGKLDDAEELLVKYGKINDGRIDLVFAYNTLIAGYGQKGRINDARRLFD 183
           SL ALVSGL++N +LD AE +L+ YG     +  LV AYNTLIAGYGQ+GR+++A+ LFD
Sbjct: 207 SLSALVSGLIQNSELDQAERILLDYGNNGGSKEYLVHAYNTLIAGYGQRGRVDEAQNLFD 266

Query: 184 QV-FYDADDPRMSGGSIIRLKRNVISWNTMIMCFVKAGEVVSARELFDKMKERDAFTWNT 360
           ++ FY+      +G    R +RNV+SWNTMIMC+VKAG+V+SAR+LFD+M +RD+F+WNT
Sbjct: 267 KIPFYNDQGKGRTG----RFERNVVSWNTMIMCYVKAGDVISARKLFDQMPDRDSFSWNT 322

Query: 361 MISGYVGMLDMEEASKLFSEMPNPDTVTWNSIISGHAHLGNL 486
           MISGYV +LDMEEAS LF +MP+PDT++WN +ISG+A  G+L
Sbjct: 323 MISGYVHVLDMEEASNLFHKMPSPDTLSWNLMISGYAQSGSL 364



 Score = 97.8 bits (242), Expect = 8e-19
 Identities = 52/129 (40%), Positives = 78/129 (60%), Gaps = 3/129 (2%)
 Frame = +1

Query: 109 VFAYNTLIAGYGQKGRINDARRLFDQVFYDADDPRMSGGSIIRLKRNVISWNTMIMCFVK 288
           +++ N  I+ + + GRIN+AR LFD++                 +RN ++WN+MI  +VK
Sbjct: 47  LYSSNKKISHFTRTGRINEARALFDKLE----------------RRNTVTWNSMISGYVK 90

Query: 289 AGEVVSARELFDKMKERDAFTWNTMISGYV---GMLDMEEASKLFSEMPNPDTVTWNSII 459
            GE+  AR+LFD+M ERD  +WN +ISGYV   G   +EE   LF +MP    V+WN++I
Sbjct: 91  RGEMTKARKLFDEMPERDVVSWNLIISGYVSCRGKRFIEEGRNLFDKMPERCCVSWNTMI 150

Query: 460 SGHAHLGNL 486
           SG+A  G +
Sbjct: 151 SGYAKNGRM 159



 Score = 91.7 bits (226), Expect = 6e-17
 Identities = 53/159 (33%), Positives = 86/159 (54%), Gaps = 3/159 (1%)
 Frame = +1

Query: 19  VSGLVRNGKLDDAEELLVKYGKINDGRIDLVFAYNTLIAGYGQKGRINDARRLFDQVFYD 198
           +S   R G++++A  L  K  + N         +N++I+GY ++G +  AR+LFD++   
Sbjct: 54  ISHFTRTGRINEARALFDKLERRN------TVTWNSMISGYVKRGEMTKARKLFDEM--- 104

Query: 199 ADDPRMSGGSIIRLKRNVISWNTMIMCFVKAGE---VVSARELFDKMKERDAFTWNTMIS 369
                         +R+V+SWN +I  +V       +   R LFDKM ER   +WNTMIS
Sbjct: 105 -------------PERDVVSWNLIISGYVSCRGKRFIEEGRNLFDKMPERCCVSWNTMIS 151

Query: 370 GYVGMLDMEEASKLFSEMPNPDTVTWNSIISGHAHLGNL 486
           GY     M+EA  LF+ MP  ++V+WN+++SG    G++
Sbjct: 152 GYAKNGRMDEALGLFNTMPEKNSVSWNAMVSGFLQNGDV 190



 Score = 79.3 bits (194), Expect = 3e-13
 Identities = 38/74 (51%), Positives = 49/74 (66%)
 Frame = +1

Query: 247 NVISWNTMIMCFVKAGEVVSARELFDKMKERDAFTWNTMISGYVGMLDMEEASKLFSEMP 426
           N+ S N  I  F + G +  AR LFDK++ R+  TWN+MISGYV   +M +A KLF EMP
Sbjct: 46  NLYSSNKKISHFTRTGRINEARALFDKLERRNTVTWNSMISGYVKRGEMTKARKLFDEMP 105

Query: 427 NPDTVTWNSIISGH 468
             D V+WN IISG+
Sbjct: 106 ERDVVSWNLIISGY 119



 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 34/130 (26%), Positives = 70/130 (53%), Gaps = 6/130 (4%)
 Frame = +1

Query: 115 AYNTLIAGYGQKGRINDARRLFDQVFYDADDPRMSGGSIIRLKRNVISWNTMIMCFVKAG 294
           ++NT+I+GY + GR+++A  LF+ +                 ++N +SWN M+  F++ G
Sbjct: 145 SWNTMISGYAKNGRMDEALGLFNTM----------------PEKNSVSWNAMVSGFLQNG 188

Query: 295 EVVSARELFDKMKERDAFTWNTMISGYVGMLDMEEASKLFSEMPNPD------TVTWNSI 456
           +VV A E F +M ERD  + + ++SG +   ++++A ++  +  N           +N++
Sbjct: 189 DVVRAIEFFKRMPERDVTSLSALVSGLIQNSELDQAERILLDYGNNGGSKEYLVHAYNTL 248

Query: 457 ISGHAHLGNL 486
           I+G+   G +
Sbjct: 249 IAGYGQRGRV 258


>emb|CBI37820.3| unnamed protein product [Vitis vinifera]
          Length = 504

 Score =  197 bits (501), Expect = 7e-49
 Identities = 100/163 (61%), Positives = 127/163 (77%), Gaps = 1/163 (0%)
 Frame = +1

Query: 1   ASLCALVSGLVRNGKLDDAEELLVKYGKINDGRIDLVFAYNTLIAGYGQKGRINDARRLF 180
           ASL ALV+GL++NG+LD+A+ +L+   + +D + DLV AYN L+AGYGQ GR++ AR+LF
Sbjct: 48  ASLSALVAGLIQNGELDEAKRILLTSRRQDDDKGDLVHAYNILLAGYGQNGRVDKARQLF 107

Query: 181 DQV-FYDADDPRMSGGSIIRLKRNVISWNTMIMCFVKAGEVVSARELFDKMKERDAFTWN 357
           DQ+ FYD    +  GG   R +RNV+SWN+MIMC+VKA ++ SAR LFD+MKERD  +WN
Sbjct: 108 DQIPFYDGG--QKDGG---RFERNVVSWNSMIMCYVKARDIFSARVLFDQMKERDTISWN 162

Query: 358 TMISGYVGMLDMEEASKLFSEMPNPDTVTWNSIISGHAHLGNL 486
           TMISGYV M DMEEA  LF EMPNPDT+TWNS+ISG A  GNL
Sbjct: 163 TMISGYVRMSDMEEAWMLFQEMPNPDTLTWNSMISGFAQKGNL 205


>ref|XP_002278375.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial [Vitis vinifera]
          Length = 681

 Score =  197 bits (501), Expect = 7e-49
 Identities = 100/163 (61%), Positives = 127/163 (77%), Gaps = 1/163 (0%)
 Frame = +1

Query: 1   ASLCALVSGLVRNGKLDDAEELLVKYGKINDGRIDLVFAYNTLIAGYGQKGRINDARRLF 180
           ASL ALV+GL++NG+LD+A+ +L+   + +D + DLV AYN L+AGYGQ GR++ AR+LF
Sbjct: 225 ASLSALVAGLIQNGELDEAKRILLTSRRQDDDKGDLVHAYNILLAGYGQNGRVDKARQLF 284

Query: 181 DQV-FYDADDPRMSGGSIIRLKRNVISWNTMIMCFVKAGEVVSARELFDKMKERDAFTWN 357
           DQ+ FYD    +  GG   R +RNV+SWN+MIMC+VKA ++ SAR LFD+MKERD  +WN
Sbjct: 285 DQIPFYDGG--QKDGG---RFERNVVSWNSMIMCYVKARDIFSARVLFDQMKERDTISWN 339

Query: 358 TMISGYVGMLDMEEASKLFSEMPNPDTVTWNSIISGHAHLGNL 486
           TMISGYV M DMEEA  LF EMPNPDT+TWNS+ISG A  GNL
Sbjct: 340 TMISGYVRMSDMEEAWMLFQEMPNPDTLTWNSMISGFAQKGNL 382



 Score = 94.4 bits (233), Expect = 9e-18
 Identities = 53/135 (39%), Positives = 77/135 (57%), Gaps = 2/135 (1%)
 Frame = +1

Query: 88  NDGRIDLVFAYNTLIAGYGQKGRINDARRLFDQVFYDADDPRMSGGSIIRLKRNVISWNT 267
           N   +DL +  N  I+   + GRIN+AR LFD +                 +RN+++WN+
Sbjct: 61  NSVSLDL-YTPNKRISHLIRNGRINEARALFDAM----------------PQRNIVTWNS 103

Query: 268 MIMCFVKAGEVVSARELFDKMKERDAFTWNTMISGYVGMLD--MEEASKLFSEMPNPDTV 441
           MI  +V+  E+  AR+LFD+M +RD  +WN MISGYV      +EE   LF EMP  D V
Sbjct: 104 MITGYVRRREMAKARKLFDEMPDRDVVSWNLMISGYVSCQGRWVEEGRHLFDEMPERDCV 163

Query: 442 TWNSIISGHAHLGNL 486
           +WN++ISG+   G +
Sbjct: 164 SWNTMISGYTRSGRM 178



 Score = 82.8 bits (203), Expect = 3e-14
 Identities = 49/176 (27%), Positives = 92/176 (52%), Gaps = 20/176 (11%)
 Frame = +1

Query: 19  VSGLVRNGKLDDAEELLVKYGKINDGRIDLVFAYNTLIAGYGQKGRINDARRLFDQVFYD 198
           +S L+RNG++++A  L     + N      +  +N++I GY ++  +  AR+LFD++   
Sbjct: 74  ISHLIRNGRINEARALFDAMPQRN------IVTWNSMITGYVRRREMAKARKLFDEM--- 124

Query: 199 ADDPRMSGGSIIR--------------------LKRNVISWNTMIMCFVKAGEVVSAREL 318
            D   +S   +I                      +R+ +SWNTMI  + ++G +  A +L
Sbjct: 125 PDRDVVSWNLMISGYVSCQGRWVEEGRHLFDEMPERDCVSWNTMISGYTRSGRMDEALQL 184

Query: 319 FDKMKERDAFTWNTMISGYVGMLDMEEASKLFSEMPNPDTVTWNSIISGHAHLGNL 486
           FD M+ER+  +WN M++G++   D+E A + F  MP  D+ + +++++G    G L
Sbjct: 185 FDSMQERNVVSWNAMVTGFLQNGDVERAIEFFMRMPERDSASLSALVAGLIQNGEL 240



 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 35/130 (26%), Positives = 70/130 (53%), Gaps = 6/130 (4%)
 Frame = +1

Query: 115 AYNTLIAGYGQKGRINDARRLFDQVFYDADDPRMSGGSIIRLKRNVISWNTMIMCFVKAG 294
           ++NT+I+GY + GR+++A +LFD +                 +RNV+SWN M+  F++ G
Sbjct: 164 SWNTMISGYTRSGRMDEALQLFDSM----------------QERNVVSWNAMVTGFLQNG 207

Query: 295 EVVSARELFDKMKERDAFTWNTMISGYVGMLDMEEASKLFSEMPNPD------TVTWNSI 456
           +V  A E F +M ERD+ + + +++G +   +++EA ++       D         +N +
Sbjct: 208 DVERAIEFFMRMPERDSASLSALVAGLIQNGELDEAKRILLTSRRQDDDKGDLVHAYNIL 267

Query: 457 ISGHAHLGNL 486
           ++G+   G +
Sbjct: 268 LAGYGQNGRV 277


>emb|CAN67319.1| hypothetical protein VITISV_039344 [Vitis vinifera]
          Length = 761

 Score =  197 bits (501), Expect = 7e-49
 Identities = 100/163 (61%), Positives = 127/163 (77%), Gaps = 1/163 (0%)
 Frame = +1

Query: 1   ASLCALVSGLVRNGKLDDAEELLVKYGKINDGRIDLVFAYNTLIAGYGQKGRINDARRLF 180
           ASL ALV+GL++NG+LD+A+ +L+   + +D + DLV AYN L+AGYGQ GR++ AR+LF
Sbjct: 225 ASLSALVAGLIQNGELDEAKRILLTTRRQDDDKGDLVHAYNILLAGYGQNGRVDKARQLF 284

Query: 181 DQV-FYDADDPRMSGGSIIRLKRNVISWNTMIMCFVKAGEVVSARELFDKMKERDAFTWN 357
           DQ+ FYD    +  GG   R +RNV+SWN+MIMC+VKA ++ SAR LFD+MKERD  +WN
Sbjct: 285 DQIPFYDGG--QKDGG---RFERNVVSWNSMIMCYVKARDIFSARVLFDQMKERDTISWN 339

Query: 358 TMISGYVGMLDMEEASKLFSEMPNPDTVTWNSIISGHAHLGNL 486
           TMISGYV M DMEEA  LF EMPNPDT+TWNS+ISG A  GNL
Sbjct: 340 TMISGYVRMSDMEEAWMLFQEMPNPDTLTWNSMISGFAQKGNL 382



 Score = 94.4 bits (233), Expect = 9e-18
 Identities = 53/135 (39%), Positives = 77/135 (57%), Gaps = 2/135 (1%)
 Frame = +1

Query: 88  NDGRIDLVFAYNTLIAGYGQKGRINDARRLFDQVFYDADDPRMSGGSIIRLKRNVISWNT 267
           N   +DL +  N  I+   + GRIN+AR LFD +                 +RN+++WN+
Sbjct: 61  NSVSLDL-YTPNKRISHLIRNGRINEARALFDAM----------------PQRNIVTWNS 103

Query: 268 MIMCFVKAGEVVSARELFDKMKERDAFTWNTMISGYVGMLD--MEEASKLFSEMPNPDTV 441
           MI  +V+  E+  AR+LFD+M +RD  +WN MISGYV      +EE   LF EMP  D V
Sbjct: 104 MITGYVRRREMAKARKLFDEMPDRDVVSWNLMISGYVSCRGRWVEEGRHLFDEMPERDCV 163

Query: 442 TWNSIISGHAHLGNL 486
           +WN++ISG+   G +
Sbjct: 164 SWNTMISGYTRSGRM 178



 Score = 83.6 bits (205), Expect = 2e-14
 Identities = 51/174 (29%), Positives = 94/174 (54%), Gaps = 18/174 (10%)
 Frame = +1

Query: 19  VSGLVRNGKLDDAEELLVKYGKINDGRIDLVFAYNTLIAGYGQKGRINDARRLFDQVFYD 198
           +S L+RNG++++A  L     + N      +  +N++I GY ++  +  AR+LFD++  D
Sbjct: 74  ISHLIRNGRINEARALFDAMPQRN------IVTWNSMITGYVRRREMAKARKLFDEM-PD 126

Query: 199 AD----DPRMSGGSIIRLK--------------RNVISWNTMIMCFVKAGEVVSARELFD 324
            D    +  +SG    R +              R+ +SWNTMI  + ++G +  A +LFD
Sbjct: 127 RDVVSWNLMISGYVSCRGRWVEEGRHLFDEMPERDCVSWNTMISGYTRSGRMDEALQLFD 186

Query: 325 KMKERDAFTWNTMISGYVGMLDMEEASKLFSEMPNPDTVTWNSIISGHAHLGNL 486
            M+ER+  +WN M++G++   D+E A + F  MP  D+ + +++++G    G L
Sbjct: 187 SMQERNVVSWNAMVTGFLQNGDVERAIEFFMRMPERDSASLSALVAGLIQNGEL 240



 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 35/130 (26%), Positives = 70/130 (53%), Gaps = 6/130 (4%)
 Frame = +1

Query: 115 AYNTLIAGYGQKGRINDARRLFDQVFYDADDPRMSGGSIIRLKRNVISWNTMIMCFVKAG 294
           ++NT+I+GY + GR+++A +LFD +                 +RNV+SWN M+  F++ G
Sbjct: 164 SWNTMISGYTRSGRMDEALQLFDSM----------------QERNVVSWNAMVTGFLQNG 207

Query: 295 EVVSARELFDKMKERDAFTWNTMISGYVGMLDMEEASKLFSEMPNPD------TVTWNSI 456
           +V  A E F +M ERD+ + + +++G +   +++EA ++       D         +N +
Sbjct: 208 DVERAIEFFMRMPERDSASLSALVAGLIQNGELDEAKRILLTTRRQDDDKGDLVHAYNIL 267

Query: 457 ISGHAHLGNL 486
           ++G+   G +
Sbjct: 268 LAGYGQNGRV 277