BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00035495
         (775 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002883963.1| RNA-dependent RNA polymerase family protein ...   276   4e-72
emb|CBI28010.3| unnamed protein product [Vitis vinifera]              276   4e-72
ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polyme...   276   4e-72
ref|XP_002310026.1| hypothetical protein POPTRDRAFT_562705 [Popu...   275   8e-72
ref|NP_179581.2| RNA-dependent RNA polymerase-like protein [Arab...   275   1e-71

>ref|XP_002883963.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
            subsp. lyrata] gi|297329803|gb|EFH60222.1| RNA-dependent
            RNA polymerase family protein [Arabidopsis lyrata subsp.
            lyrata]
          Length = 981

 Score =  276 bits (706), Expect = 4e-72
 Identities = 140/250 (56%), Positives = 178/250 (71%)
 Frame = +1

Query: 4    GRAVKGTLLVDLMLPSSTIQIRPSMIKVKRDSRLSSLETFTSLEMVAISHKPKKAHLSKN 183
            G AVKGT L++  L   T+Q+RPSMIKV +D  LS+  TF +LE+V  S+ P++  LSKN
Sbjct: 452  GYAVKGTFLLNKKLCPRTVQVRPSMIKVSKDPSLSNFSTFNALEVVTTSNPPRRTKLSKN 511

Query: 184  LIVLLSYGNVPREYFLGLLRNALDSLKNIYTDEYTALKVADIYSERDDVSMARSMILADI 363
            L+ LLSYG +P E+FL +L N L+  K+I+ +++ AL VA  Y E DD + A+ MIL  I
Sbjct: 512  LVALLSYGGIPNEFFLDILLNTLEESKSIFYNKHAALNVALNYGEMDDQNAAQ-MILVGI 570

Query: 364  PLHEPYLQHCLSAMAXXXXXXXXXXXXPIDDSYYLMGTVDPTGTLNPDEVSVILGDGQIS 543
            PL EP+L++ LS +             P+ +SYYLMGTVDPTG L  DEV VIL  GQIS
Sbjct: 571  PLDEPHLKNHLSILLKTEKNDLKAGRLPVTESYYLMGTVDPTGELKEDEVCVILESGQIS 630

Query: 544  GKVLVYRNPGLHHGDIHVLTAVYVSALEEMVGNAKYAIFFSAKGQRSVASEIANGDYDGD 723
            G+VLVYRNPGLH GDIH+L A YV ALEE VGN+KYA+FF  KG RS+  EIA GD+DGD
Sbjct: 631  GEVLVYRNPGLHFGDIHILKATYVKALEEYVGNSKYAVFFPQKGPRSLGDEIAGGDFDGD 690

Query: 724  MYFVSRNPQV 753
            MYF+SRNP++
Sbjct: 691  MYFISRNPEL 700


>emb|CBI28010.3| unnamed protein product [Vitis vinifera]
          Length = 929

 Score =  276 bits (706), Expect = 4e-72
 Identities = 139/251 (55%), Positives = 181/251 (72%)
 Frame = +1

Query: 1    HGRAVKGTLLVDLMLPSSTIQIRPSMIKVKRDSRLSSLETFTSLEMVAISHKPKKAHLSK 180
            +G AVKGTLL++  LP  TIQIRPSMIKV+ D +LS  +T  S+E+   S++P++++LSK
Sbjct: 398  NGCAVKGTLLLNRKLPPRTIQIRPSMIKVETDPKLSDTQTVNSVEINGTSNQPRRSYLSK 457

Query: 181  NLIVLLSYGNVPREYFLGLLRNALDSLKNIYTDEYTALKVADIYSERDDVSMARSMILAD 360
             LI LLSYG VP EYF+ LL++AL+   ++ + +  AL+V+  + E DD S+   MIL+ 
Sbjct: 458  YLIALLSYGGVPNEYFMNLLKDALEDAPSVQSSKRAALRVSLRFGEMDD-SIVTRMILSG 516

Query: 361  IPLHEPYLQHCLSAMAXXXXXXXXXXXXPIDDSYYLMGTVDPTGTLNPDEVSVILGDGQI 540
            IP+ EP+L HCLS M             P++D +YLMGT DPTGTL  DEV +IL  GQ+
Sbjct: 517  IPIDEPFLHHCLSFMVNEERKGLRVGKLPVNDCFYLMGTADPTGTLKSDEVCIILDHGQV 576

Query: 541  SGKVLVYRNPGLHHGDIHVLTAVYVSALEEMVGNAKYAIFFSAKGQRSVASEIANGDYDG 720
             G+VLVY++PGLH GDIHVL A YV ALEE VGNAKYAIFF  KG RS+A E+AN D+DG
Sbjct: 577  QGRVLVYKHPGLHFGDIHVLNATYVEALEEFVGNAKYAIFFPIKGPRSLADEMANSDFDG 636

Query: 721  DMYFVSRNPQV 753
            DMY+VSRN Q+
Sbjct: 637  DMYWVSRNQQL 647


>ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
            vinifera]
          Length = 943

 Score =  276 bits (706), Expect = 4e-72
 Identities = 139/251 (55%), Positives = 181/251 (72%)
 Frame = +1

Query: 1    HGRAVKGTLLVDLMLPSSTIQIRPSMIKVKRDSRLSSLETFTSLEMVAISHKPKKAHLSK 180
            +G AVKGTLL++  LP  TIQIRPSMIKV+ D +LS  +T  S+E+   S++P++++LSK
Sbjct: 412  NGCAVKGTLLLNRKLPPRTIQIRPSMIKVETDPKLSDTQTVNSVEINGTSNQPRRSYLSK 471

Query: 181  NLIVLLSYGNVPREYFLGLLRNALDSLKNIYTDEYTALKVADIYSERDDVSMARSMILAD 360
             LI LLSYG VP EYF+ LL++AL+   ++ + +  AL+V+  + E DD S+   MIL+ 
Sbjct: 472  YLIALLSYGGVPNEYFMNLLKDALEDAPSVQSSKRAALRVSLRFGEMDD-SIVTRMILSG 530

Query: 361  IPLHEPYLQHCLSAMAXXXXXXXXXXXXPIDDSYYLMGTVDPTGTLNPDEVSVILGDGQI 540
            IP+ EP+L HCLS M             P++D +YLMGT DPTGTL  DEV +IL  GQ+
Sbjct: 531  IPIDEPFLHHCLSFMVNEERKGLRVGKLPVNDCFYLMGTADPTGTLKSDEVCIILDHGQV 590

Query: 541  SGKVLVYRNPGLHHGDIHVLTAVYVSALEEMVGNAKYAIFFSAKGQRSVASEIANGDYDG 720
             G+VLVY++PGLH GDIHVL A YV ALEE VGNAKYAIFF  KG RS+A E+AN D+DG
Sbjct: 591  QGRVLVYKHPGLHFGDIHVLNATYVEALEEFVGNAKYAIFFPIKGPRSLADEMANSDFDG 650

Query: 721  DMYFVSRNPQV 753
            DMY+VSRN Q+
Sbjct: 651  DMYWVSRNQQL 661


>ref|XP_002310026.1| hypothetical protein POPTRDRAFT_562705 [Populus trichocarpa]
           gi|222852929|gb|EEE90476.1| hypothetical protein
           POPTRDRAFT_562705 [Populus trichocarpa]
          Length = 406

 Score =  275 bits (703), Expect = 8e-72
 Identities = 141/253 (55%), Positives = 179/253 (70%)
 Frame = +1

Query: 1   HGRAVKGTLLVDLMLPSSTIQIRPSMIKVKRDSRLSSLETFTSLEMVAISHKPKKAHLSK 180
           +GRAVKGT LV+  L   T+ +RPSMIKV+ D +LS+  +  SLE+V  S +PKK  LSK
Sbjct: 149 NGRAVKGTFLVNKKLNHRTLHVRPSMIKVETDPKLSNTFSKNSLEIVGTSCRPKKTFLSK 208

Query: 181 NLIVLLSYGNVPREYFLGLLRNALDSLKNIYTDEYTALKVADIYSERDDVSMARSMILAD 360
           NLI LLSYG VP E+F+G+L NAL+    I +++  AL+VA  Y + DD ++  +MI   
Sbjct: 209 NLIALLSYGGVPEEFFMGILNNALEDAHGILSNKKAALRVALNYGDMDD-NIVATMIGCG 267

Query: 361 IPLHEPYLQHCLSAMAXXXXXXXXXXXXPIDDSYYLMGTVDPTGTLNPDEVSVILGDGQI 540
           IPL EPYLQH LS +             P+ +SYYLMGT DPTG L  DEV +IL  GQ+
Sbjct: 268 IPLEEPYLQHHLSILKKEEKKSLKGGKIPVPESYYLMGTADPTGLLESDEVCIILDCGQV 327

Query: 541 SGKVLVYRNPGLHHGDIHVLTAVYVSALEEMVGNAKYAIFFSAKGQRSVASEIANGDYDG 720
           SG+VLVYRNPGLH GDIH+L A YV  LE+ VGNAKYAIFF  KG RS+A E++ GD+DG
Sbjct: 328 SGEVLVYRNPGLHFGDIHILKATYVRELEDFVGNAKYAIFFPCKGPRSLADEMSGGDFDG 387

Query: 721 DMYFVSRNPQVNI 759
           DM+FVSRNP+V++
Sbjct: 388 DMFFVSRNPRVSV 400


>ref|NP_179581.2| RNA-dependent RNA polymerase-like protein [Arabidopsis thaliana]
            gi|322967566|sp|O82190.2|RDR3_ARATH RecName:
            Full=Probable RNA-dependent RNA polymerase 3;
            Short=AtRDRP3; AltName: Full=RNA-directed RNA polymerase
            3 gi|330251848|gb|AEC06942.1| RNA-dependent RNA
            polymerase-like protein [Arabidopsis thaliana]
          Length = 992

 Score =  275 bits (702), Expect = 1e-71
 Identities = 142/251 (56%), Positives = 171/251 (68%)
 Frame = +1

Query: 1    HGRAVKGTLLVDLMLPSSTIQIRPSMIKVKRDSRLSSLETFTSLEMVAISHKPKKAHLSK 180
            +G AVKGT L +  LP  T+Q+RPSMIKV  D  LS+L TF SLE+V  S+ P+KA LS+
Sbjct: 460  NGYAVKGTFLTNKKLPPRTVQVRPSMIKVYEDRTLSNLSTFNSLEVVTTSNPPRKARLSR 519

Query: 181  NLIVLLSYGNVPREYFLGLLRNALDSLKNIYTDEYTALKVADIYSERDDVSMARSMILAD 360
            NL+ LLSYG VP ++FL +LRN L+  K I+  E  A K A  Y    D      MIL  
Sbjct: 520  NLVALLSYGGVPNDFFLNILRNTLEESKTIFYSERAAFKAAINYG---DDQYTADMILVG 576

Query: 361  IPLHEPYLQHCLSAMAXXXXXXXXXXXXPIDDSYYLMGTVDPTGTLNPDEVSVILGDGQI 540
            IPL EPYL+  LS +             PID+SYY+MGTVDPTG L  +E+ VIL  GQI
Sbjct: 577  IPLDEPYLKDRLSYLLKTERNALKAGRFPIDESYYIMGTVDPTGELKENEICVILHSGQI 636

Query: 541  SGKVLVYRNPGLHHGDIHVLTAVYVSALEEMVGNAKYAIFFSAKGQRSVASEIANGDYDG 720
            SG VLVYRNPGLH GDIHVL A YV ALE+ VGNAK+A+FF  KG RS+  EIA GD+DG
Sbjct: 637  SGDVLVYRNPGLHFGDIHVLKATYVKALEDYVGNAKFAVFFPQKGPRSLGDEIAGGDFDG 696

Query: 721  DMYFVSRNPQV 753
            DMYF+SRNP++
Sbjct: 697  DMYFISRNPKL 707