BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00035446
         (649 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD21778.1| putative non-LTR retroelement reverse transcripta...    61   4e-10
ref|XP_003621614.1| DNA-directed RNA polymerase III subunit RPC6...    68   1e-09
gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-...    56   2e-09
gb|AAD32950.1| putative non-LTR retroelement reverse transcripta...    56   2e-09
gb|ADK92871.1| retrotransposon protein [Hypericum perforatum]          54   1e-08

>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1715

 Score = 60.8 bits (146), Expect(2) = 4e-10
 Identities = 23/52 (44%), Positives = 35/52 (67%)
 Frame = -3

Query: 350  KQVWKLRLPPRVKQFLWRCLHNIVPTKERRRRRGIMVDPTCILCNNAAETLN 195
            +++W+L++ P++K F+WRCL   + T  + R R I  DPTC  C NA ET+N
Sbjct: 1386 QEIWRLKITPKIKHFIWRCLSGALSTTTQLRNRNIPADPTCQRCCNADETIN 1437



 Score = 28.9 bits (63), Expect(2) = 4e-10
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -1

Query: 538  EKVLEGEDVRRVLGILLSRRGVRNKLSWSHTRCGNYLTSLGYKYARPMQRIEGRV 374
            E VL  ED +    + LS    R+   W++TR   Y    GY  A  +   E  +
Sbjct: 1320 EGVLNPEDQQLAKSLYLSNYAARDSYKWAYTRNTQYTVRSGYWVATHVNLTEEEI 1374


>ref|XP_003621614.1| DNA-directed RNA polymerase III subunit RPC6 [Medicago truncatula]
           gi|355496629|gb|AES77832.1| DNA-directed RNA polymerase
           III subunit RPC6 [Medicago truncatula]
          Length = 456

 Score = 68.2 bits (165), Expect = 1e-09
 Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
 Frame = -3

Query: 353 WKQVWKLRLPPRVKQFLWRCLHNIVPTKERRRRRGIMVDPTCILCNNAAETLNTFTT*LP 174
           WK +WKL LP RV+ F+W+   NI+PT+   RRRG+++D  C LC +A E+ N      P
Sbjct: 260 WKLIWKLPLPTRVRNFMWKLARNIIPTRCNLRRRGVVLDTVCPLCFDADESSNHRFMACP 319

Query: 173 IYFQVMAYLPTHFE-------NLWRALAILYWL 96
           +  QV    P  F+       N W    +L WL
Sbjct: 320 MTLQVWFASPLGFQPPPQTDLNAW----LLSWL 348


>gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
          Length = 1142

 Score = 55.8 bits (133), Expect(2) = 2e-09
 Identities = 20/50 (40%), Positives = 33/50 (66%)
 Frame = -3

Query: 344 VWKLRLPPRVKQFLWRCLHNIVPTKERRRRRGIMVDPTCILCNNAAETLN 195
           +WK++ PP+++ FLW+ L   VP  E  R+RGI+ D  C+ C  + E++N
Sbjct: 828 IWKVQCPPKLRHFLWQILSGCVPVSENLRKRGILCDKGCVSCGASEESIN 877



 Score = 32.0 bits (71), Expect(2) = 2e-09
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -1

Query: 541 VEKVLEGEDVRRVLGILLSRRGVRNKLSWSHTRCGNYLTSLGYKYAR 401
           ++++ + EDV  +  + +    + + L W  T+ GNY    GY  AR
Sbjct: 761 LKELFDPEDVPLISALPIGNPNMEDTLGWHFTKAGNYTVKSGYHTAR 807


>gb|AAD32950.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 773

 Score = 55.8 bits (133), Expect(2) = 2e-09
 Identities = 22/58 (37%), Positives = 32/58 (55%)
 Frame = -3

Query: 368 STSGTWKQVWKLRLPPRVKQFLWRCLHNIVPTKERRRRRGIMVDPTCILCNNAAETLN 195
           S    +  +WK   PP++K F WR  HN +PT    +RR ++ D TC  C  A+E +N
Sbjct: 493 SAQTVFTNIWKQNAPPKIKHFWWRSAHNALPTAGNLKRRRLITDDTCQRCGEASEDVN 550



 Score = 32.0 bits (71), Expect(2) = 2e-09
 Identities = 15/58 (25%), Positives = 28/58 (48%)
 Frame = -1

Query: 562 GQ*NQGEVEKVLEGEDVRRVLGILLSRRGVRNKLSWSHTRCGNYLTSLGYKYARPMQR 389
           G+ N+  + K++   D+  +  I  S  G  + ++W +T  GNY    GY   R + +
Sbjct: 423 GRWNEDLLCKLIHQNDIPHIRAIRPSITGANDAITWIYTHDGNYSVKSGYHLLRKLSQ 480


>gb|ADK92871.1| retrotransposon protein [Hypericum perforatum]
          Length = 593

 Score = 54.3 bits (129), Expect(2) = 1e-08
 Identities = 23/51 (45%), Positives = 28/51 (54%)
 Frame = -3

Query: 353 WKQVWKLRLPPRVKQFLWRCLHNIVPTKERRRRRGIMVDPTCILCNNAAET 201
           WK  W LR PPR+K  LWR + N +  +    RRGI VD  C  C   +ET
Sbjct: 281 WKTCWGLRCPPRIKTLLWRLIDNNLSVRTNLTRRGIQVDEVCPCCAGPSET 331



 Score = 30.4 bits (67), Expect(2) = 1e-08
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -1

Query: 553 NQGEVEKVLEGEDVRRVLGILLSRRGVRNKLSWSHTRCGNYLTSLGY 413
           N+  +    E EDV R+L I LS R   + + W   + G Y    GY
Sbjct: 211 NENLLRLCFEEEDVTRILQIRLSLRRPLDMVRWKFIKDGEYTVRSGY 257