BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00034567
         (551 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADD31164.1| RNA polymerase beta' subunit protein [Ehretia acu...   240   1e-61
prf||1211235Q rpoC-like ORF 548                                       239   2e-61
ref|XP_004174097.1| PREDICTED: DNA-directed RNA polymerase subun...   239   3e-61
ref|YP_001671674.1| RNA polymerase beta' subunit [Carica papaya]...   237   8e-61
ref|YP_004940501.1| rpoC1 gene product (chloroplast) [Boea hygro...   235   4e-60

>gb|ADD31164.1| RNA polymerase beta' subunit protein [Ehretia acuminata]
          Length = 687

 Score =  240 bits (612), Expect = 1e-61
 Identities = 117/123 (95%), Positives = 119/123 (96%)
 Frame = +1

Query: 166 YPNFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 345
           Y +FSFARPITKKPTFLRLRG FEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE
Sbjct: 149 YCDFSFARPITKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 208

Query: 346 QLADLDLQIIIDKSFVEWKELGEGGPTGNEWEDRKVGRRKDFLVKRMELAKHFIRTNIEP 525
           QLADLDLQIIIDKS VEWKELGEGGPTGNEWEDRKVGRRKDFLV+RMELAKHFIRTNIEP
Sbjct: 209 QLADLDLQIIIDKSLVEWKELGEGGPTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEP 268

Query: 526 E*M 534
           E M
Sbjct: 269 EWM 271


>prf||1211235Q rpoC-like ORF 548
          Length = 548

 Score =  239 bits (611), Expect = 2e-61
 Identities = 116/131 (88%), Positives = 123/131 (93%)
 Frame = +1

Query: 142 KGGNPIGFYPNFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREIS 321
           +GG+PI  YPNFSFARPITKKPTFLRLRG FEYEIQSWKYSIPLFFTTQGFDTFRNREIS
Sbjct: 1   RGGDPIESYPNFSFARPITKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREIS 60

Query: 322 TGAGAIREQLADLDLQIIIDKSFVEWKELGEGGPTGNEWEDRKVGRRKDFLVKRMELAKH 501
           TGAGAIREQLADLDL+III+ S VEW+ELGE G TGNEWEDRKVGRRKDFLV+R+ELAKH
Sbjct: 61  TGAGAIREQLADLDLRIIIENSLVEWEELGEEGHTGNEWEDRKVGRRKDFLVRRVELAKH 120

Query: 502 FIRTNIEPE*M 534
           FIRTNIEPE M
Sbjct: 121 FIRTNIEPEWM 131


>ref|XP_004174097.1| PREDICTED: DNA-directed RNA polymerase subunit beta'-like, partial
           [Cucumis sativus]
          Length = 471

 Score =  239 bits (609), Expect = 3e-61
 Identities = 116/128 (90%), Positives = 120/128 (93%)
 Frame = +1

Query: 151 NPIGFYPNFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGA 330
           +PI  YPNFSFARPI KKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGA
Sbjct: 3   DPIVSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGA 62

Query: 331 GAIREQLADLDLQIIIDKSFVEWKELGEGGPTGNEWEDRKVGRRKDFLVKRMELAKHFIR 510
           GAIREQLADLDL++IID S VEWKELGE GP GNEWEDRKVGRRKDFLV+RMELAKHFIR
Sbjct: 63  GAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFLVRRMELAKHFIR 122

Query: 511 TNIEPE*M 534
           TNIEPE M
Sbjct: 123 TNIEPEWM 130


>ref|YP_001671674.1| RNA polymerase beta' subunit [Carica papaya]
           gi|212288463|sp|B1A926.1|RPOC1_CARPA RecName:
           Full=DNA-directed RNA polymerase subunit beta'; AltName:
           Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
           subunit beta'; Short=RNA polymerase subunit beta'
           gi|166344123|gb|ABY86773.1| RNA polymerase beta' chain
           [Carica papaya]
          Length = 680

 Score =  237 bits (605), Expect = 8e-61
 Identities = 115/123 (93%), Positives = 119/123 (96%)
 Frame = +1

Query: 166 YPNFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 345
           Y +FSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE
Sbjct: 142 YCDFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 201

Query: 346 QLADLDLQIIIDKSFVEWKELGEGGPTGNEWEDRKVGRRKDFLVKRMELAKHFIRTNIEP 525
           QLADLDLQIIID SF+EWKELGE GPTGNEWEDRK+GRRKDFLV+RMELAKHFIRTNIEP
Sbjct: 202 QLADLDLQIIIDYSFLEWKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNIEP 261

Query: 526 E*M 534
           E M
Sbjct: 262 EWM 264


>ref|YP_004940501.1| rpoC1 gene product (chloroplast) [Boea hygrometrica]
           gi|340549398|gb|AEK53220.1| RNA polymerase beta
           (chloroplast) [Boea hygrometrica]
          Length = 691

 Score =  235 bits (599), Expect = 4e-60
 Identities = 111/121 (91%), Positives = 117/121 (96%)
 Frame = +1

Query: 166 YPNFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 345
           YPNFSFARPITKKPTFLRLRG FEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE
Sbjct: 153 YPNFSFARPITKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 212

Query: 346 QLADLDLQIIIDKSFVEWKELGEGGPTGNEWEDRKVGRRKDFLVKRMELAKHFIRTNIEP 525
           QLADLDL+II+D S VEWKELGE GPTGNEW+DRKVGRRKDFLV+RMELAKHF+RTNI+P
Sbjct: 213 QLADLDLRIILDNSLVEWKELGEEGPTGNEWDDRKVGRRKDFLVRRMELAKHFLRTNIDP 272

Query: 526 E 528
           E
Sbjct: 273 E 273