BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00034555
         (421 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAB48347.1| reverse transcriptase, partial [Arabidopsis thali...    84   4e-31
pir||S65819 RNA-directed DNA polymerase (EC 2.7.7.49) (clone N2)...    84   4e-31
gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-...    86   7e-31
gb|AAD29058.1| putative non-LTR retroelement reverse transcripta...    84   9e-31
gb|AAB48345.1| reverse transcriptase, partial [Arabidopsis thali...    80   9e-31

>gb|AAB48347.1| reverse transcriptase, partial [Arabidopsis thaliana]
          Length = 199

 Score = 84.0 bits (206), Expect(2) = 4e-31
 Identities = 39/74 (52%), Positives = 57/74 (77%)
 Frame = -2

Query: 417 TQVCLIQKSFSPTNTNELRHISLCNIVAKIIGKVMTNRLRPILMKIISETQSAFLLGRII 238
           T +CLI K+  PT   +LR ISLC+++ KII KV+  RL+P+L +I+S  QSAF+  R+I
Sbjct: 43  THLCLIPKTIHPTEMVDLRPISLCSVLYKIISKVIVKRLQPLLPQIVSVNQSAFVSERLI 102

Query: 237 SDNILIAHEILHTL 196
           +DNIL+AHE++H+L
Sbjct: 103 TDNILVAHELVHSL 116



 Score = 75.9 bits (185), Expect(2) = 4e-31
 Identities = 36/67 (53%), Positives = 47/67 (70%)
 Frame = -3

Query: 203 IHFMNHSASVSNANMAIKLNMSKASGRVEWNFLEAIMLKLGFCRHWVDWNMTLVSVVSYS 24
           +H +    S+S+  MAIK +MSKA  RVEW+FL A++L LGF + WV+W MT VS V+YS
Sbjct: 113 VHSLRTHPSISSEFMAIKSDMSKAYDRVEWSFLRALLLALGFHQRWVEWIMTCVSTVTYS 172

Query: 23  FLINGDP 3
            LIN  P
Sbjct: 173 VLINDQP 179


>pir||S65819 RNA-directed DNA polymerase (EC 2.7.7.49) (clone N2) - Arabidopsis
           thaliana retrotransposon Ta24 (fragment)
          Length = 184

 Score = 84.0 bits (206), Expect(2) = 4e-31
 Identities = 39/74 (52%), Positives = 57/74 (77%)
 Frame = -2

Query: 417 TQVCLIQKSFSPTNTNELRHISLCNIVAKIIGKVMTNRLRPILMKIISETQSAFLLGRII 238
           T +CLI K+  PT   +LR ISLC+++ KII KV+  RL+P+L +I+S  QSAF+  R+I
Sbjct: 37  THLCLIPKTIHPTEMVDLRPISLCSVLYKIISKVIVKRLQPLLPQIVSVNQSAFVSERLI 96

Query: 237 SDNILIAHEILHTL 196
           +DNIL+AHE++H+L
Sbjct: 97  TDNILVAHELVHSL 110



 Score = 75.9 bits (185), Expect(2) = 4e-31
 Identities = 36/67 (53%), Positives = 47/67 (70%)
 Frame = -3

Query: 203 IHFMNHSASVSNANMAIKLNMSKASGRVEWNFLEAIMLKLGFCRHWVDWNMTLVSVVSYS 24
           +H +    S+S+  MAIK +MSKA  RVEW+FL A++L LGF + WV+W MT VS V+YS
Sbjct: 107 VHSLRTHPSISSEFMAIKSDMSKAYDRVEWSFLRALLLALGFHQRWVEWIMTCVSTVTYS 166

Query: 23  FLINGDP 3
            LIN  P
Sbjct: 167 VLINDQP 173


>gb|AAG51783.1|AC079679_3 reverse transcriptase, putative; 16838-20266 [Arabidopsis thaliana]
          Length = 1142

 Score = 85.9 bits (211), Expect(2) = 7e-31
 Identities = 42/74 (56%), Positives = 54/74 (72%)
 Frame = -2

Query: 417 TQVCLIQKSFSPTNTNELRHISLCNIVAKIIGKVMTNRLRPILMKIISETQSAFLLGRII 238
           T +CLI K+  PT   ELR ISLCN+  K+I K++  RL+ +L  +ISETQSAF+ GR+I
Sbjct: 271 TNICLIPKTERPTRMTELRPISLCNVGYKVISKILCQRLKTVLPNLISETQSAFVDGRLI 330

Query: 237 SDNILIAHEILHTL 196
           SDNILIA E+ H L
Sbjct: 331 SDNILIAQEMFHGL 344



 Score = 73.2 bits (178), Expect(2) = 7e-31
 Identities = 31/66 (46%), Positives = 44/66 (66%)
 Frame = -3

Query: 200 HFMNHSASVSNANMAIKLNMSKASGRVEWNFLEAIMLKLGFCRHWVDWNMTLVSVVSYSF 21
           H +  ++S  +  MAIK +MSKA  +VEWNF+EA++ K+GFC  W+ W M  ++ V Y  
Sbjct: 342 HGLRTNSSCKDKFMAIKTDMSKAYDQVEWNFIEALLRKMGFCEKWISWIMWCITTVQYKV 401

Query: 20  LINGDP 3
           LING P
Sbjct: 402 LINGQP 407


>gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1229

 Score = 84.0 bits (206), Expect(2) = 9e-31
 Identities = 41/77 (53%), Positives = 53/77 (68%)
 Frame = -2

Query: 417 TQVCLIQKSFSPTNTNELRHISLCNIVAKIIGKVMTNRLRPILMKIISETQSAFLLGRII 238
           T + LI K   P    + R I+LCNI  KI+ K+MT R++ IL K+ISE QSAF+ GR+I
Sbjct: 382 THIRLIPKDLGPRKVADYRPIALCNIFYKIVAKIMTKRMQLILPKLISENQSAFVPGRVI 441

Query: 237 SDNILIAHEILHTLHES 187
           SDN+LI HE+LH L  S
Sbjct: 442 SDNVLITHEVLHFLRTS 458



 Score = 74.7 bits (182), Expect(2) = 9e-31
 Identities = 32/67 (47%), Positives = 48/67 (71%)
 Frame = -3

Query: 203 IHFMNHSASVSNANMAIKLNMSKASGRVEWNFLEAIMLKLGFCRHWVDWNMTLVSVVSYS 24
           +HF+  S++  + +MA+K +MSKA  RVEW+FL+ ++ + GF   W+DW +  V+ VSYS
Sbjct: 452 LHFLRTSSAKKHCSMAVKTDMSKAYDRVEWDFLKKVLQRFGFHSIWIDWVLECVTSVSYS 511

Query: 23  FLINGDP 3
           FLING P
Sbjct: 512 FLINGTP 518


>gb|AAB48345.1| reverse transcriptase, partial [Arabidopsis thaliana]
          Length = 195

 Score = 80.1 bits (196), Expect(2) = 9e-31
 Identities = 39/77 (50%), Positives = 53/77 (68%)
 Frame = -2

Query: 417 TQVCLIQKSFSPTNTNELRHISLCNIVAKIIGKVMTNRLRPILMKIISETQSAFLLGRII 238
           T V LI K  +P    + + I+LCN+  KII K++T RL+P+L K++S+ QSAFL GR I
Sbjct: 39  TFVRLIPKIQAPKKVTDYKPIALCNVYFKIISKILTQRLKPLLHKLVSDNQSAFLAGRAI 98

Query: 237 SDNILIAHEILHTLHES 187
           +DN+LI HE LH L  S
Sbjct: 99  ADNVLITHETLHFLKTS 115



 Score = 78.6 bits (192), Expect(2) = 9e-31
 Identities = 32/67 (47%), Positives = 47/67 (70%)
 Frame = -3

Query: 203 IHFMNHSASVSNANMAIKLNMSKASGRVEWNFLEAIMLKLGFCRHWVDWNMTLVSVVSYS 24
           +HF+  S ++ N +MA+K  MSKA  RVEW+F++AI+ ++GF   W+DW +   S V+YS
Sbjct: 109 LHFLKTSGAIKNCSMAVKTGMSKAYDRVEWSFIKAILQRMGFASCWIDWILECTSTVTYS 168

Query: 23  FLINGDP 3
           FLIN  P
Sbjct: 169 FLINSQP 175