BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00034296
         (771 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003605603.1| 30S ribosomal protein S11 [Medicago truncatu...   310   3e-82
gb|ADD31214.1| RNA polymerase alpha subunit protein [Ehretia acu...   274   1e-71
ref|YP_005296132.1| rpoA gene product (chloroplast) [Pentactina ...   271   1e-70
ref|YP_003359390.1| RNA polymerase alpha subunit (chloroplast) [...   270   3e-70
ref|YP_514884.1| RNA polymerase alpha subunit [Solanum lycopersi...   270   3e-70

>ref|XP_003605603.1| 30S ribosomal protein S11 [Medicago truncatula]
           gi|355506658|gb|AES87800.1| 30S ribosomal protein S11
           [Medicago truncatula]
          Length = 430

 Score =  310 bits (793), Expect = 3e-82
 Identities = 166/237 (70%), Positives = 176/237 (74%)
 Frame = +3

Query: 60  SGNAICTVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLTFVRDVTPMPHNGCRPPKK 239
           + NAI TVVDQGMQRA V+IKGPGLGRDAALRAI RSGILL F+RDVTP+PHNGCR PKK
Sbjct: 76  AANAIRTVVDQGMQRAVVIIKGPGLGRDAALRAIARSGILLRFIRDVTPIPHNGCRAPKK 135

Query: 240 KTCVEMNIEAIFRETREINDYMI*SNNITMVREKVTVSTRTLQWKCVESRTDSKRLYYGR 419
           +                                           KCVESR DSKRLYYGR
Sbjct: 136 RR------------------------------------------KCVESRVDSKRLYYGR 153

Query: 420 FILSPLMKGQADTIGIAMRRALLGEIEGTCITRVKFESEKIPHEYSTVGGIQESLHEILM 599
           FILSPL KGQADTIGIAMRR LLGEIEGTCITR K  SEKIPHEYST+ GIQES+HEILM
Sbjct: 154 FILSPLRKGQADTIGIAMRRILLGEIEGTCITRAK--SEKIPHEYSTIVGIQESIHEILM 211

Query: 600 NLKEIVLRSNIYGTCHASICVKGPGYVTAQDIILPPCVEIVDNTQHIVNLTEPIDLC 770
           NLKEIVL+SN+YGT  ASIC KGPGYVTAQDIILPP VEIVDNTQHI NLTEPI+LC
Sbjct: 212 NLKEIVLKSNLYGTRDASICFKGPGYVTAQDIILPPSVEIVDNTQHIANLTEPINLC 268


>gb|ADD31214.1| RNA polymerase alpha subunit protein [Ehretia acuminata]
          Length = 339

 Score =  274 bits (701), Expect = 1e-71
 Identities = 135/148 (91%), Positives = 141/148 (95%)
 Frame = +3

Query: 327 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 506
           MVREKV VSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1   MVREKVIVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60

Query: 507 CITRVKFESEKIPHEYSTVGGIQESLHEILMNLKEIVLRSNIYGTCHASICVKGPGYVTA 686
            ITRVK ESEK+PHEYST+ GIQES+HEILMNLKEIVLRSN+YGTC ASICV+GPGYVTA
Sbjct: 61  SITRVKSESEKVPHEYSTISGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTA 120

Query: 687 QDIILPPCVEIVDNTQHIVNLTEPIDLC 770
           QDIILPP VEIVDNTQHI +LTEPIDLC
Sbjct: 121 QDIILPPYVEIVDNTQHIASLTEPIDLC 148


>ref|YP_005296132.1| rpoA gene product (chloroplast) [Pentactina rupicola]
           gi|371532654|gb|AEX31764.1| RNA polymerase alpha subunit
           (chloroplast) [Pentactina rupicola]
          Length = 326

 Score =  271 bits (693), Expect = 1e-70
 Identities = 135/148 (91%), Positives = 141/148 (95%)
 Frame = +3

Query: 327 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 506
           MVREKVTVSTRTLQWKCVESR DSKRLYYGRFIL+PLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1   MVREKVTVSTRTLQWKCVESRADSKRLYYGRFILAPLMKGQADTIGIAMRRALLGEIEGT 60

Query: 507 CITRVKFESEKIPHEYSTVGGIQESLHEILMNLKEIVLRSNIYGTCHASICVKGPGYVTA 686
           CITR K  SEKIPHEYST+ GIQES+HEILMNLKEIVLRSN+YGTC+ASICVKGPGYVTA
Sbjct: 61  CITRAK--SEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTCNASICVKGPGYVTA 118

Query: 687 QDIILPPCVEIVDNTQHIVNLTEPIDLC 770
           QDIILPP VEIVDNTQHI NLTEPI+LC
Sbjct: 119 QDIILPPSVEIVDNTQHIANLTEPINLC 146


>ref|YP_003359390.1| RNA polymerase alpha subunit (chloroplast) [Olea europaea]
           gi|330850774|ref|YP_004376452.1| RNA polymerase alpha
           subunit [Olea europaea subsp. europaea]
           gi|334700313|ref|YP_004563812.1| RNA polymerase alpha
           subunit [Olea europaea subsp. cuspidata]
           gi|334701650|ref|YP_004564035.1| RNA polymerase alpha
           subunit [Olea woodiana subsp. woodiana]
           gi|334701919|ref|YP_004564528.1| RNA polymerase alpha
           subunit [Olea europaea subsp. maroccana]
           gi|281428718|gb|ADA69957.1| RNA polymerase alpha subunit
           (chloroplast) [Olea europaea]
           gi|291059284|gb|ADD72120.1| RNA polymerase alpha subunit
           [Olea europaea] gi|328795464|emb|CBR30346.1| RNA
           polymerase alpha subunit [Olea europaea subsp. europaea]
           gi|334084432|emb|CBR23861.1| RNA polymerase alpha
           subunit [Olea europaea subsp. cuspidata]
           gi|334084518|emb|CBR24655.1| RNA polymerase alpha
           subunit [Olea europaea subsp. europaea]
           gi|334084604|emb|CBR30439.1| RNA polymerase alpha
           subunit [Olea europaea subsp. europaea]
           gi|334084690|emb|CBS29383.1| RNA polymerase alpha
           subunit [Olea woodiana subsp. woodiana]
           gi|334084895|emb|CBS29273.1| RNA polymerase alpha
           subunit [Olea europaea subsp. maroccana]
           gi|334084981|emb|CBJ04329.1| RNA polymerase alpha
           subunit [Olea europaea subsp. cuspidata]
           gi|334085067|emb|CBR23770.1| RNA polymerase alpha
           subunit [Olea europaea subsp. cuspidata]
          Length = 337

 Score =  270 bits (690), Expect = 3e-70
 Identities = 134/148 (90%), Positives = 140/148 (94%)
 Frame = +3

Query: 327 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 506
           MVREKVTVSTRTLQWKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1   MVREKVTVSTRTLQWKCVESREDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60

Query: 507 CITRVKFESEKIPHEYSTVGGIQESLHEILMNLKEIVLRSNIYGTCHASICVKGPGYVTA 686
           CITRVK  SE +PHEYST+ GIQES+HEILMNLKEIVLRSN+YGTC ASICV+GPGYVTA
Sbjct: 61  CITRVK--SENVPHEYSTIAGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTA 118

Query: 687 QDIILPPCVEIVDNTQHIVNLTEPIDLC 770
           QDIILPP VEIVDNTQHI +LTEPIDLC
Sbjct: 119 QDIILPPYVEIVDNTQHIASLTEPIDLC 146


>ref|YP_514884.1| RNA polymerase alpha subunit [Solanum lycopersicum]
           gi|109900622|sp|Q2MI69.1|RPOA_SOLLC RecName:
           Full=DNA-directed RNA polymerase subunit alpha;
           Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
           subunit alpha; Short=RNA polymerase subunit alpha
           gi|84372014|gb|ABC56331.1| RNA polymerase alpha subunit
           [Solanum lycopersicum] gi|89241703|emb|CAJ32426.1| RNA
           polymerase alpha chain [Solanum lycopersicum]
          Length = 337

 Score =  270 bits (689), Expect = 3e-70
 Identities = 135/148 (91%), Positives = 140/148 (94%)
 Frame = +3

Query: 327 MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 506
           MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1   MVREKVTVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60

Query: 507 CITRVKFESEKIPHEYSTVGGIQESLHEILMNLKEIVLRSNIYGTCHASICVKGPGYVTA 686
           CITRVK  SEK+PHEYST+ GIQES+HEILMNLKEIVLRSN+YGT  ASICVKGPGYVTA
Sbjct: 61  CITRVK--SEKVPHEYSTITGIQESVHEILMNLKEIVLRSNLYGTSEASICVKGPGYVTA 118

Query: 687 QDIILPPCVEIVDNTQHIVNLTEPIDLC 770
           QDIILPP VEIVDNTQHI +LTEPID C
Sbjct: 119 QDIILPPYVEIVDNTQHIASLTEPIDFC 146