BLASTX nr result

ID: Lithospermum22_contig00034209 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Lithospermum22_contig00034209
         (258 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002318937.1| chromatin remodeling complex subunit [Populu...    61   1e-07
ref|XP_002328309.1| chromatin remodeling complex subunit [Populu...    58   9e-07

>ref|XP_002318937.1| chromatin remodeling complex subunit [Populus trichocarpa]
            gi|222857313|gb|EEE94860.1| chromatin remodeling complex
            subunit [Populus trichocarpa]
          Length = 2283

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 32/83 (38%), Positives = 45/83 (54%)
 Frame = +3

Query: 9    LLSWGVSDLFNRLEEFHNNKSGTMLVDIACEDLLANNVLREFQVILTTEAVSKDSKDSLI 188
            LL WG S LF +L EFH         +   E     +V++EF  I+  +       +S+I
Sbjct: 1050 LLMWGASYLFEKLSEFHCGNDTASSGNTLFEQSHLKDVIQEFLTIIIQKGKDNTPSNSII 1109

Query: 189  TKVRQLRGVYRTDFPLLGESKIQ 257
             KV+Q +G+Y T+FPL GE KIQ
Sbjct: 1110 LKVKQNQGIYTTNFPLHGERKIQ 1132


>ref|XP_002328309.1| chromatin remodeling complex subunit [Populus trichocarpa]
           gi|222837824|gb|EEE76189.1| chromatin remodeling complex
           subunit [Populus trichocarpa]
          Length = 1996

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 32/83 (38%), Positives = 47/83 (56%)
 Frame = +3

Query: 9   LLSWGVSDLFNRLEEFHNNKSGTMLVDIACEDLLANNVLREFQVILTTEAVSKDSKDSLI 188
           LL WGVS LF++L EF+          +  E     +V++EF  I+T +   K+  +S+I
Sbjct: 683 LLMWGVSYLFDKLSEFNCGNDPASSGTLLSEQSHMKDVIQEFLTIVTQKGKDKNLINSII 742

Query: 189 TKVRQLRGVYRTDFPLLGESKIQ 257
             V+Q +G Y T+ PL GE KIQ
Sbjct: 743 LNVKQNQGSYTTNLPLHGEPKIQ 765


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