BLASTX nr result
ID: Lithospermum22_contig00034136
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Lithospermum22_contig00034136
(351 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ADE80751.1| cold shock domain protein 1 [Eutrema salsugineum] 68 9e-10
ref|XP_002867041.1| hypothetical protein ARALYDRAFT_491032 [Arab... 67 2e-09
ref|NP_195326.1| cellular nucleic acid-binding protein [Arabidop... 65 8e-09
gb|ADE80750.1| cold shock domain protein 3 [Eutrema salsugineum] 64 1e-08
ref|NP_565427.1| cold shock domain protein 3 [Arabidopsis thalia... 64 1e-08
>gb|ADE80751.1| cold shock domain protein 1 [Eutrema salsugineum]
Length = 263
Score = 67.8 bits (164), Expect = 9e-10
Identities = 27/41 (65%), Positives = 31/41 (75%), Gaps = 1/41 (2%)
Frame = -3
Query: 349 GACYTCGGVGHMARVCPSGRR-GGCYTCGGQGHMARDCQQK 230
G CY CGG GHMAR CP+ R+ G CY CGG GHMARDC ++
Sbjct: 190 GVCYNCGGAGHMARDCPTKRQPGACYECGGTGHMARDCDRR 230
Score = 62.8 bits (151), Expect = 3e-08
Identities = 28/45 (62%), Positives = 30/45 (66%), Gaps = 5/45 (11%)
Frame = -3
Query: 349 GACYTCGGVGHMARVCPSGRRG-----GCYTCGGQGHMARDCQQK 230
G+CY CG VGHMA+ C S RG GCYTCG GH ARDC QK
Sbjct: 98 GSCYHCGEVGHMAKDCSSSDRGDRSSGGCYTCGDTGHFARDCVQK 142
Score = 55.8 bits (133), Expect = 4e-06
Identities = 27/53 (50%), Positives = 27/53 (50%), Gaps = 13/53 (24%)
Frame = -3
Query: 349 GACYTCGGVGHMARVC---------PSGRRGG----CYTCGGQGHMARDCQQK 230
G CYTCG GH AR C G RGG CY CG GH ARDC QK
Sbjct: 124 GGCYTCGDTGHFARDCVQKSSGNGGSGGERGGAGGECYNCGNTGHFARDCVQK 176
Score = 55.5 bits (132), Expect = 5e-06
Identities = 26/51 (50%), Positives = 26/51 (50%), Gaps = 11/51 (21%)
Frame = -3
Query: 349 GACYTCGGVGHMARVCP-----------SGRRGGCYTCGGQGHMARDCQQK 230
G CY CG GH AR C SG G CY CGG GHMARDC K
Sbjct: 158 GECYNCGNTGHFARDCVQKSVGNVGDRGSGGGGVCYNCGGAGHMARDCPTK 208
>ref|XP_002867041.1| hypothetical protein ARALYDRAFT_491032 [Arabidopsis lyrata subsp.
lyrata] gi|297312877|gb|EFH43300.1| hypothetical protein
ARALYDRAFT_491032 [Arabidopsis lyrata subsp. lyrata]
Length = 257
Score = 67.0 bits (162), Expect = 2e-09
Identities = 27/42 (64%), Positives = 33/42 (78%), Gaps = 2/42 (4%)
Frame = -3
Query: 349 GACYTCGGVGHMARVCPSGRRG--GCYTCGGQGHMARDCQQK 230
G+CYTCGGVGH+AR C + R+ GCY CGG GH+ARDC Q+
Sbjct: 190 GSCYTCGGVGHIARECATKRQPSRGCYQCGGSGHLARDCDQR 231
>ref|NP_195326.1| cellular nucleic acid-binding protein [Arabidopsis thaliana]
gi|75318587|sp|O65639.1|CSP1_ARATH RecName: Full=Cold
shock protein 1; Short=AtCSP1; AltName: Full=Cold shock
domain-containing protein 1 gi|3036806|emb|CAA18496.1|
glycine-rich protein [Arabidopsis thaliana]
gi|7270554|emb|CAB81511.1| glycine-rich protein
[Arabidopsis thaliana] gi|110741941|dbj|BAE98911.1|
glycine-rich protein [Arabidopsis thaliana]
gi|332661203|gb|AEE86603.1| cellular nucleic
acid-binding protein [Arabidopsis thaliana]
Length = 299
Score = 64.7 bits (156), Expect = 8e-09
Identities = 26/42 (61%), Positives = 32/42 (76%), Gaps = 2/42 (4%)
Frame = -3
Query: 349 GACYTCGGVGHMARVCPSGRRG--GCYTCGGQGHMARDCQQK 230
G CY+CGGVGH+AR C + R+ GCY CGG GH+ARDC Q+
Sbjct: 230 GTCYSCGGVGHIARDCATKRQPSRGCYQCGGSGHLARDCDQR 271
Score = 55.8 bits (133), Expect = 4e-06
Identities = 26/51 (50%), Positives = 27/51 (52%), Gaps = 13/51 (25%)
Frame = -3
Query: 343 CYTCGGVGHMARVCPS-------------GRRGGCYTCGGQGHMARDCQQK 230
CYTCG VGH+AR C G GCYTCG GH ARDC QK
Sbjct: 166 CYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQK 216
Score = 55.5 bits (132), Expect = 5e-06
Identities = 33/92 (35%), Positives = 36/92 (39%), Gaps = 11/92 (11%)
Frame = -3
Query: 343 CYTCGGVGHMARVCPSGRRG-----------GCYTCGGQGHMARDCQQKXXXXXXXXXXX 197
CY CG GH AR C S G GCYTCG GH+ARDC QK
Sbjct: 134 CYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQK--------SVG 185
Query: 196 XXXXXXXXXXXXXXXXXXXXXGHFARDCEEKL 101
GHFARDC +K+
Sbjct: 186 NGDQRGAVKGGNDGCYTCGDVGHFARDCTQKV 217
Score = 54.7 bits (130), Expect = 8e-06
Identities = 25/49 (51%), Positives = 27/49 (55%), Gaps = 11/49 (22%)
Frame = -3
Query: 343 CYTCGGVGHMARVCPS-----------GRRGGCYTCGGQGHMARDCQQK 230
CYTCG VGH AR C G G CY+CGG GH+ARDC K
Sbjct: 200 CYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCATK 248
>gb|ADE80750.1| cold shock domain protein 3 [Eutrema salsugineum]
Length = 295
Score = 63.9 bits (154), Expect = 1e-08
Identities = 29/45 (64%), Positives = 32/45 (71%), Gaps = 7/45 (15%)
Frame = -3
Query: 343 CYTCGGVGHMARVC----PSGRRGG---CYTCGGQGHMARDCQQK 230
CYTCGG GHMARVC PSG GG CY CGG GH+ARDC ++
Sbjct: 223 CYTCGGFGHMARVCTSKRPSGGGGGVGACYECGGIGHLARDCDRR 267
Score = 56.2 bits (134), Expect = 3e-06
Identities = 26/52 (50%), Positives = 28/52 (53%), Gaps = 13/52 (25%)
Frame = -3
Query: 349 GACYTCGGVGHMARVCPSGRRG-------------GCYTCGGQGHMARDCQQ 233
GACY CG VGHMA+ C G G GCY CG GH ARDC+Q
Sbjct: 156 GACYNCGEVGHMAKDCRGGSGGNRYGGGGRGSGGEGCYMCGDVGHFARDCRQ 207
Score = 56.2 bits (134), Expect = 3e-06
Identities = 23/43 (53%), Positives = 28/43 (65%), Gaps = 6/43 (13%)
Frame = -3
Query: 349 GACYTCGGVGHMARVCPSGRRGG------CYTCGGQGHMARDC 239
GACY CGG+GH+AR C GG C+TCG +GH AR+C
Sbjct: 249 GACYECGGIGHLARDCDRRGSGGGSGSSKCFTCGKEGHFAREC 291
>ref|NP_565427.1| cold shock domain protein 3 [Arabidopsis thaliana]
gi|75165198|sp|Q94C69.1|CSP3_ARATH RecName: Full=Cold
shock domain-containing protein 3; Short=AtCSP3
gi|14334920|gb|AAK59638.1| putative glycine-rich,
zinc-finger DNA-binding protein [Arabidopsis thaliana]
gi|17104541|gb|AAL34159.1| putative glycine-rich,
zinc-finger DNA-binding protein [Arabidopsis thaliana]
gi|148726892|dbj|BAF63841.1| cold shock domain protein 3
[Arabidopsis thaliana] gi|330251603|gb|AEC06697.1| cold
shock domain protein 3 [Arabidopsis thaliana]
Length = 301
Score = 63.9 bits (154), Expect = 1e-08
Identities = 28/45 (62%), Positives = 33/45 (73%), Gaps = 7/45 (15%)
Frame = -3
Query: 343 CYTCGGVGHMARVC----PSGRRGG---CYTCGGQGHMARDCQQK 230
CYTCGGVGH+A+VC PSG GG CY CGG GH+ARDC ++
Sbjct: 226 CYTCGGVGHIAKVCTSKIPSGGGGGGRACYECGGTGHLARDCDRR 270